aprasad's cns [31 articles] Export

Recent papers added to aprasad's library classified by the tag cns. You can also see everyone's cns.

	Conserved elements within open reading frames of mammalian Hox genes. [My Copy] Journal of biology, Vol. 8, No. 2. (06 February 2009), 17. by Joost M. Woltering, Denis Duboule posted to mcs evolution conservation coding cns by aprasad on 2009-10-09 18:24:09 as along with 2 people jm12 maximilianh
	Dispensability of Mammalian DNA. [My Copy] Genome research, Vol. 18, No. 11. (November 2008), pp. 1743-1751. by C. Mclean, G. Bejerano posted to cns evolution model non-coding selection ultraconserved by aprasad on 2009-06-20 21:55:51 as along with 2 people gjuggler alhufton
	Deletion of Ultraconserved Elements Yields Viable Mice [My Copy] PLoS Biol, Vol. 5, No. 9. (4 September 2007), e234. by Nadav Ahituv, Yiwen Zhu, Axel Visel, et al.Amy Holt, Veena Afzal, Len A. Pennacchio, Edward M. Rubin posted to cns functional mouse mutation selection ultraconserved by aprasad on 2009-06-20 21:53:52 as along with 10 people and 3 groups galka8_diploma balicea dchughes cwbrown djkt lp2 cabbagezs Stew gjuggler bpcusack EisenLab G4ID Genetics-of-Gambling
	Conserved noncoding sequences are reliable guides to regulatory elements [My Copy] Trends in Genetics, Vol. 16, No. 9. (1 September 2000), pp. 369-372. by Ross C. Hardison posted to cns comparative_genomics regulatory by aprasad on 2009-04-29 22:41:21 as along with 1 person brant
	Genomic regions with distinct genomic distance conservation in vertebrate genomes. [My Copy] BMC genomics, Vol. 10, No. 1. (27 March 2009) by H. Sun, G. Skogerbø, X. Zheng, W. Liu, Y. Li posted to cns genetic_distance indel ultraconserved by aprasad on 2009-04-29 14:28:10 as along with 3 people and 1 group JustinCrocker cisevol Schmidtc cis-regulatory-evolution
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to cns evolution selection structural_variation by aprasad on 2009-03-17 21:42:59 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Evidence for turnover of functional noncoding DNA in mammalian genome evolution. [My Copy] Genomics, Vol. 84, No. 5. (November 2004), pp. 806-813. by N. G. Smith, M. Brandström, H. Ellegren posted to cns conservation evolution by aprasad on 2009-03-09 01:43:15 as along with 4 people and 2 groups galka8_diploma devin dpollard cisevol EisenLab cis-regulatory-evolution
	Highly conserved non-coding sequences are associated with vertebrate development. [My Copy] PLoS Biol, Vol. 3, No. 1. (January 2005) by A. Woolfe, M. Goodson, D. K. Goode, et al.P. Snell, G. K. McEwen, T. Vavouri, S. F. Smith, P. North, H. Callaway, K. Kelly, K. Walter, I. Abnizova, W. Gilks, Y. J. Edwards, J. E. Cooke, G. Elgar posted to cns development regulatory by aprasad on 2008-12-09 22:56:00 as along with 12 people and 3 groups daveGerrard diamantis nklee bryankr awoolfe djkt sujaikumar Stew maximilianh cisevol rrhudson gelgar BergmanLab EisenLab cis-regulatory-evolution
	Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. [My Copy] Science (New York, N.Y.), Vol. 288, No. 5463. (7 April 2000), pp. 136-140. by G. G. Loots, R. M. Locksley, C. M. Blankespoor, et al.Z. E. Wang, W. Miller, E. M. Rubin, K. A. Frazer posted to cns comparative_genomics mcs tfbs by aprasad on 2008-12-09 22:23:51 as
	Computational identification of transcriptional regulatory elements in DNA sequence. [My Copy] Nucleic acids research, Vol. 34, No. 12. (19 July 2006), pp. 3585-3598. by Debraj GuhaThakurta posted to cns methods regulatory review by aprasad on 2008-12-04 23:19:47 as along with 12 people and 1 group maximilianh hagechouchin443 isimpson tmmurali jfr johncumbers reidy giovanni cabbagezs ankur_iitg vietanh0 xili03 GeschwindLab
	Selective Constraints in Experimentally Defined Primate Regulatory Regions [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000157. by Daniel J. Gaffney, Ran Blekhman, Jacek Majewski posted to cns regulatory selection by aprasad on 2008-08-15 20:10:22 as along with 10 people and 2 groups daveGerrard xianjun madreach alhufton djkt bpcusack pradiptaray caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
	Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements [My Copy] Proceedings of the National Academy of Sciences (11 December 2007), 0705658104. by Sergey I. Nikolaev, Juan, Konstantin Popadin, et al.Leila Parand, Elliott H. Margulies, Nisc, Stylianos E. Antonarakis posted to cns coding evolution substitution_rate by aprasad on 2008-05-22 20:05:25 as along with 5 people and 1 group pradiptaray djkt cjeans zwang cisevol cis-regulatory-evolution
	Qualifying the relationship between sequence conservation and molecular function [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205. by Gregory M. Cooper, Christopher D. Brown posted to cns conservation functional_genomics non-coding regulatory by aprasad on 2008-03-07 16:29:07 as along with 8 people akiii farhat emptyhb brant djkt xingxu bpcusack nklee
	Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs [My Copy] Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565. by Jasmina Ponjavic, Chris P. Ponting, Gerton Lunter posted to cns mutation_rate non-coding selection ncrna by aprasad on 2007-09-13 20:01:33 as along with 6 people and 4 groups alexg dchughes djkt Stew elfar bpcusack Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Divergence of conserved non-coding sequences: rate estimates and relative rate tests. [My Copy] Mol Biol Evol, Vol. 21, No. 11. (November 2004), pp. 2116-2121. by G. P. Wagner, C. Fried, S. J. Prohaska, P. F. Stadler posted to cns genome_evolution methods mutation_rate by aprasad on 2007-08-28 13:45:31 as
	Remote control of gene expression. [My Copy] J Biol Chem, Vol. 282, No. 22. (1 June 2007), pp. 15941-15945. by X. Long, J. M. Miano posted to cns comparative_genomics regulatory by aprasad on 2007-08-13 16:33:48 as
	ExactPlus web interface [My Copy] by Arjun B. Prasad, Anthony Antonellis posted to cns comparative_genomics exactplus functional mcs regulatory signature by aprasad on 2007-08-06 22:22:03 as
	The evolution of gene regulation by transcription factors and microRNAs [My Copy] Nature Reviews Genetics, Vol. 8, No. 2. (01 February 2007), pp. 93-103. by Kevin Chen, Nikolaus Rajewsky posted to cns microrna regulatory review by aprasad on 2007-08-04 13:24:43 as along with 24 people and 4 groups heliopais guhjy antonkratz qfwills vvoorr jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena bootsy robertkofler EisenLab microRNA Nie GIG
	MATCH: A tool for searching transcription factor binding sites in DNA sequences. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579. by A. E. Kel, E. Gössling, I. Reuter, E. Cheremushkin, Kel O. V. Margoulis, E. Wingender posted to cns regulatory tfbs by aprasad on 2007-07-31 23:27:36 as along with 7 people farhat setar reidy nklee danish_punter maximilianh emptyhb
	A statistical analysis of the TRANSFAC database. [My Copy] Biosystems, Vol. 81, No. 2. (August 2005), pp. 137-154. by G. B. Fogel, D. G. Weekes, G. Varga, et al.E. R. Dow, A. M. Craven, H. B. Harlow, E. W. Su, J. E. Onyia, C. Su posted to cns element regulatory signature transfac by aprasad on 2007-07-31 14:06:55 as
	Cross-Species Sequence Comparisons: A Review of Methods and Available Resources [My Copy] Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 1-12. by K. A. Frazer, L. Elnitski, D. M. Church, I. Dubchak, R. C. Hardison posted to cns comparative_genomics regulatory by aprasad on 2007-07-31 14:05:13 as along with 1 person stharward
	Conserved distances between vertebrate highly conserved elements. [My Copy] Hum Mol Genet (21 August 2006) by Hong Sun, Geir Skogerb√∏, Runsheng Chen posted to cns comparative_genomics regulatory spacing by aprasad on 2007-04-18 15:33:48 as along with 1 person and 1 group dpollard EisenLab
	A survey of motif discovery methods in an integrated framework [My Copy] Biology Direct, Vol. 1, No. 1. (06 April 2006), 11. by Geir K. Sandve, Finn Drabl√∏s posted to cns element regulatory signature by aprasad on 2007-04-17 15:38:47 as along with 11 people and 1 group tomhebbron Scis0000002 maximilianh wowalz AbnerCYH dpollard samal yevishere csdhwang idonaldson yoonk EisenLab
	A large family of ancient repeat elements in the human genome is under strong selection [My Copy] PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745. by Michael Kamal, Xiaohui Xie, Eric S. Lander posted to cns mammal repeat selection whole_genome by aprasad on 2006-06-26 20:49:09 as along with 4 people and 2 groups balicea cmm cisevol gjuggler FAB-lab cis-regulatory-evolution
	Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity. [My Copy] Science (23 March 2006) by Shannon Fisher, Elizabeth A. A. Grice, Ryan M. M. Vinton, Seneca L. L. Bessling, Andrew S. S. Mccallion posted to cns element enhancer jc regulatory by aprasad on 2006-04-01 00:24:28 as along with 5 people and 3 groups adepace nickluscombe maximilianh cisevol emptyhb EisenLab EBI-regulation cis-regulatory-evolution
	Deletion of long-range sequences at Sox10 compromises developmental expression in a mouse model of WaardenburgShah (WS4) syndrome [My Copy] Human Molecular Genetics, Vol. 15, No. 2. (15 January 2006), pp. 259-271. by Anthony Antonellis, William R. Bennett, Arjun B. Prasad, et al.Shih-Queen Lee-Lin, Eric D. Green, Derek Paisley, Robert N. Kelsh, William J. Pavan, Andrew Ward posted to cns comparative_genomics element enhancer exactplus functional regulatory signature by aprasad on 2006-03-31 22:29:05 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	"Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison [My Copy] Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 347-354. by Alexander E. Vinogradov posted to cns genome_evolution genome_size jc selection whole_genome by aprasad on 2006-03-31 00:43:33 as along with 5 people and 2 groups tuck indigoviolet penka miniprep lilou EisenLab Nie
	Conserved noncoding sequences are selectively constrained and not mutation cold spots [My Copy] Nature Genetics, Vol. 38, No. 2. (25 December 2005), pp. 223-227. by Jared A. Drake, Christine Bird, James Nemesh, et al.Daryl J. Thomas, Christopher N. Cheh, Alexandre Reymond, Laurent Excoffier, Homa Attar, Stylianos E. Antonarakis, Emmanouil T. Dermitzakis, Joel N. Hirschhorn posted to cns genome_evolution human_genome jc whole_genome by aprasad on 2006-02-25 21:39:22 as along with 8 people and 2 groups daforerog provero xianjun ccots ashandanj Stew cisevol bpcusack EisenLab cis-regulatory-evolution
	Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny. [My Copy] Hum Mol Genet, Vol. 14, No. 20. (15 October 2005), pp. 3057-3063. by N. Ahituv, S. Prabhakar, F. Poulin, E. M. Rubin, O. Couronne posted to cns comparative_genomics element functional regulatory signal by aprasad on 2006-02-13 20:16:12 as along with 2 people ethkim maximilianh
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to cns comparative_genomics conservation evolution genome_evolution mutation_rate phastcons by aprasad on 2005-12-02 22:15:13 as along with 20 people and 4 groups thegoose2 farhat skembel alessandroparini tharris bpb balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences. [My Copy] Trends Genet, Vol. 21, No. 8. (August 2005), pp. 436-440. by K. Walter, I. Abnizova, G. Elgar, W. R. Gilks posted to cns comparative_genomics genome motif mulliken by aprasad on 2005-08-25 16:48:08 as along with 2 people and 2 groups Stew cisevol EisenLab cis-regulatory-evolution

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phylogenetics	248
tree	119
evolution	111
methods	107
genome_size	88
review	71
mammal	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	46
comparative_genomics	44
phylogenomics	44
bat	43
selection	43
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
genomics	26
human_genome	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
substitution_rate	18
mutation	18
rare_genomic_characters	17
gc	17
sequence	17
retrotransposon	16
algorithm	16
simulation	15
platyrrhini	13
element	12
model	12
congruence_landscapes	12
root_eutheria	11
mitochondria	11
time	11
conservation	11
bacteria	11
mcs	10
nisc	10
jc	10
homo-pan-gorilla	10
chimp	10
msa	10
isochore	10
parsimony	10
functional	9
morphology	9
theria	9
plants	9
bac	9
motif	9
lineage_sorting	9
tfbs	9
encode	8
recombination	8
long_branch_attraction	8
speciation	8
horizontal_gene_transfer	8
flying_dna	8
non-coding	8
phil	8
mouse	7
tree_visualization	7
signature	6
repeat	6
model_choice	6
phylogenetic_accuracy	6
nucleotypic_effect	6
time_tree	6
indel_rate	6
molecular_clock	6
sox10	6
consensus	6
coalescent	6
book	6
drosophila	6
rodents	6
missing_data	6
cpg	5
theory	5
bird	5
gene_geneology	5
cytogenetics	5
ncrna	5
plant	5
monotreme	5
yeast	5
colorectal_cancer	5
chicken	5
map	5
ultraconserved	5
ortholog	5
promoter	5
gdf6	5
variation	5
fish	5
enhancer	5
molecular_evolution	5
hmm	5
rearrangement	5
methylation	5
binfo	5
bac_mapping	4
ucsc	4
ry_coding	4
island	4
genomic	4
analysis	4
chip	4
model_selection	4
placental	4
star_paradox	4
genome_paper	4
atlantogenata	4
karyotype	4
exon	4
protein	4
splicing	4
afrotheria	4
intrinsic_features	4
neutral	4
signal	4
correlations	4
murphy	4
chromatin	4
alignment_error	4
supertree	4
joint	4
glires	4
overgo	4
ild	4
zooseq	4
simultaneous_inference	3
exactplus	3
mrbayes	3
sequencing	3
root	3
synteny	3
laurasiatheria	3
partitioning	3
skin	3
dinosaur	3
development	3
centromere	3
bootstrap	3
microinversions	3
cetartiodactyla	3
bioinformatics	3
dog	3
marsupionta	3
epigenetics	3
functional_genomics	3
bias	3
phylogenetic_signal	3
homoplasy	3
support	3
sine	3
saturation	2
est	2
lrt	2
pipmaker	2
hox	2
carnivore	2
duplication	2
boreoeutheria	2
genetic_distance	2
outgroup	2
database	2
experimental	2
browser	2
transfac	2
alu	2
structural_variation	2
intraspecifc_variation	2
comment	2
rodent	2
ecology	2
error	2
raxml	2
sliding_window	2
microsatellite	2
microrna	2
dnasei	2
career	2
phastcons	2
epigraph	2
software	2
medical_genetics	2
eulipotyphla	2
nags	2
genome_assembly	2
line	2
hybridization	2
aa	2
insertion_site_bias	2
breakpoints	2
codon	2
rat	2
mexico	2
tba	2
cichlid	2
base_composition	2
reptile	2
coalhmm	2
expression	2
positive_selection	2
tree_comparison	2
human_evolution	2
fpc	2
paralog	2
paleontology	2
mammoth	2
non-phylogenetic_signal	2
assembly	2
systematic	1
computational_model	1
genetic_disease	1
hplc	1
biofuel	1
fossil	1
replication	1
perissodactylas	1
dcodeorg	1
gencode	1
archaea	1
systematic_bias	1
disease	1
cow	1
cambrian	1
textbook	1
tree_shrew	1
mammalian	1
goldfish	1
454	1
enzyme	1
clinseq	1
overdispersion	1
recon	1
metagenomics	1
hidden	1
seq-gen	1
conference	1
mom	1
medicine	1
method	1
feulgen	1
targeted_sequencing	1
inde_rate	1
finishing	1
tag	1
drug_resistance	1
c_elegans	1
thomas	1
faire	1
platypus	1
tandem_duplications	1
nature	1
spacing	1
search	1
amphibian	1
histone	1
linkage	1
kinship	1
nj	1
chordate	1
mcclintock	1
consel	1
human_microbiome	1
imprinting	1
gene_conversion	1
galaxy	1
sampling	1
gblocks	1
transcription	1
regulation	1
alligator	1
block_bootstrap	1
demography	1
visualization	1
social_class	1
phyml	1
soop	1
structure	1
evolutionary_medicine	1
history	1
branch_length	1
wgs	1
pseudogene	1
ancient_dna	1
bed	1
xenarthra	1
tuatara	1
mulliken	1
neandertal	1
orangutan	1
deletion	1
hky85	1
nylon	1
design	1
gene_deserts	1
tandem_repeats	1
genetic_code	1
antisense	1
horse	1
lactase	1
supermatrix	1
dna_loss	1
amphipod	1
whale	1
honeybee	1
cat	1
coyote	1
tetraodon	1
chr22	1
metazoa	1
dna	1
pubmed	1
silkworm	1
nomenclature	1
densitometry	1
longevity	1
trophoblast	1
bootsrap	1
single_gene	1
mixture_models	1
fitness	1
upgma	1
reverse_genetics	1
balancing_selection	1
primer	1
hubmed	1
web	1
strand	1
cnv	1
taxon_sampling	1
trees	1
me	1
nextgen_seq	1
gaps	1
arabadopsis	1
lemur	1
catarrhini	1
chip-seq	1
numts	1
modeltest	1
frog	1
gene_flow	1
illumina	1
jalview	1
r	1
chromosome	1
ancestral_state	1
gene_tree	1
usage	1
molecular_biology	1
melan-a	1
canalization	1
pig	1
muntjak	1
uprobe	1
history-of-science	1
shark	1
fugu	1
chip-chip	1
fly	1
darwin	1
euarchontoglires	1
opossum	1
physical	1

aprasad's cns [31 articles] Export

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