CiteULike: aprasad's congruence_landscapes [12 articles]

Dealing with incongruence in phylogenomic analyses.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 363, No. 1512. (27 December 2008), pp. 4023-4029.

by Nicolas Galtier, Vincent Daubin

posted to bacteria congruence congruence_landscapes phylogenetics review by aprasad on 2009-07-06 17:37:19 as

along with 4 people operon sconlan skembel treangen

The evolutionary genomics of pathogen recombination

Nature Reviews Genetics, Vol. 4, No. 1. (January 2003), pp. 50-60.

by Philip Awadalla

posted to congruence_landscapes gene_geneology recombination review by aprasad on 2009-06-29 23:55:08 as

Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains.

Applied bioinformatics, Vol. 2, No. 3. (2003), pp. 131-144.

by J. S. Sinsheimer, M. A. Suchard, K. S. Dorman, F. Fang, R. E. Weiss

posted to bayesian congruence_landscapes phylogenetics review by aprasad on 2009-06-26 17:47:02 as

along with 1 person katholt

Detecting interspecific recombination with a pruned probabilistic divergence measure.

Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1797-1806.

by D. Husmeier, F. Wright, I. Milne

posted to congruence congruence_landscapes sliding_window by aprasad on 2009-06-26 17:44:43 as

along with 1 person Ayest

Dual multiple change-point model leads to more accurate recombination detection

Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3034-3042.

by Vladimir N. Minin, Karin S. Dorman, Fang Fang, Marc A. Suchard

posted to bayesian congruence_landscapes methods by aprasad on 2009-06-26 17:35:42 as

along with 2 people druvus treangen

Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments.

Statistical applications in genetics and molecular biology, Vol. 7 (2008)

by D. Husmeier, A. V. Mantzaris

posted to congruence_landscapes methods by aprasad on 2009-06-26 17:33:08 as

Accurate detection of recombinant breakpoints in whole-genome alignments.

PLoS computational biology, Vol. 5, No. 3. (March 2009)

by O. Westesson, I. Holmes

posted to congruence congruence_landscapes hmm methods whole_genome by aprasad on 2009-06-26 17:30:04 as

along with 2 people friendpine mhamada

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference

Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1274-1275.

by D. Paraskevis, K. Deforche, P. Lemey, G. Magiorkinis, A. Hatzakis, A. M. Vandamme

posted to bayesian congruence_landscapes methods phylogenetics tools by aprasad on 2009-06-26 17:27:31 as

Phylogenetic inference under recombination using Bayesian stochastic topology selection.

Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 197-203.

by Alex Webb, John M. Hancock, Chris C. Holmes

posted to bayesian congruence_landscapes methods phylogenetics by aprasad on 2009-06-26 17:11:22 as

along with 2 people sameersoi bertrandservin

Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences

Mol Biol Evol, Vol. 15, No. 3. (1 March 1998), pp. 326-335.

by G. F. Weiller

posted to congruence congruence_landscapes phylogenetics by aprasad on 2009-06-26 16:35:28 as

Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model

PLoS Genet, Vol. 3, No. 2. (23 February 2007), e7.

by Asger Hobolth, Ole F. Christensen, Thomas Mailund, Mikkel H. Schierup

posted to time_tree phylogenetics jc homo-pan-gorilla hmm congruence_landscapes congruence coalhmm by aprasad on 2009-02-27 16:58:31 as

along with 10 people and 1 group sameersoi timflutre jdbowes usagi-kirin nurban nosada17 berthoums kourai mailund lh3 Durbin group

Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals.

Journal of molecular evolution, Vol. 55, No. 2. (August 2002), pp. 232-245.

by J. M. Archibald, A. J. Roger

posted to congruence congruence_landscapes likelihood lrt phylogenetics by aprasad on 2008-04-26 14:18:59 as

	Dealing with incongruence in phylogenomic analyses. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 363, No. 1512. (27 December 2008), pp. 4023-4029. by Nicolas Galtier, Vincent Daubin posted to bacteria congruence congruence_landscapes phylogenetics review by aprasad on 2009-07-06 17:37:19 as along with 4 people operon sconlan skembel treangen
	The evolutionary genomics of pathogen recombination [My Copy] Nature Reviews Genetics, Vol. 4, No. 1. (January 2003), pp. 50-60. by Philip Awadalla posted to congruence_landscapes gene_geneology recombination review by aprasad on 2009-06-29 23:55:08 as
	Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. [My Copy] Applied bioinformatics, Vol. 2, No. 3. (2003), pp. 131-144. by J. S. Sinsheimer, M. A. Suchard, K. S. Dorman, F. Fang, R. E. Weiss posted to bayesian congruence_landscapes phylogenetics review by aprasad on 2009-06-26 17:47:02 as along with 1 person katholt
	Detecting interspecific recombination with a pruned probabilistic divergence measure. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1797-1806. by D. Husmeier, F. Wright, I. Milne posted to congruence congruence_landscapes sliding_window by aprasad on 2009-06-26 17:44:43 as along with 1 person Ayest
	Dual multiple change-point model leads to more accurate recombination detection [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3034-3042. by Vladimir N. Minin, Karin S. Dorman, Fang Fang, Marc A. Suchard posted to bayesian congruence_landscapes methods by aprasad on 2009-06-26 17:35:42 as along with 2 people druvus treangen
	Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 7 (2008) by D. Husmeier, A. V. Mantzaris posted to congruence_landscapes methods by aprasad on 2009-06-26 17:33:08 as
	Accurate detection of recombinant breakpoints in whole-genome alignments. [My Copy] PLoS computational biology, Vol. 5, No. 3. (March 2009) by O. Westesson, I. Holmes posted to congruence congruence_landscapes hmm methods whole_genome by aprasad on 2009-06-26 17:30:04 as along with 2 people friendpine mhamada
	SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1274-1275. by D. Paraskevis, K. Deforche, P. Lemey, G. Magiorkinis, A. Hatzakis, A. M. Vandamme posted to bayesian congruence_landscapes methods phylogenetics tools by aprasad on 2009-06-26 17:27:31 as
	Phylogenetic inference under recombination using Bayesian stochastic topology selection. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 197-203. by Alex Webb, John M. Hancock, Chris C. Holmes posted to bayesian congruence_landscapes methods phylogenetics by aprasad on 2009-06-26 17:11:22 as along with 2 people sameersoi bertrandservin
	Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences [My Copy] Mol Biol Evol, Vol. 15, No. 3. (1 March 1998), pp. 326-335. by G. F. Weiller posted to congruence congruence_landscapes phylogenetics by aprasad on 2009-06-26 16:35:28 as
	Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model [My Copy] PLoS Genet, Vol. 3, No. 2. (23 February 2007), e7. by Asger Hobolth, Ole F. Christensen, Thomas Mailund, Mikkel H. Schierup posted to time_tree phylogenetics jc homo-pan-gorilla hmm congruence_landscapes congruence coalhmm by aprasad on 2009-02-27 16:58:31 as along with 10 people and 1 group sameersoi timflutre jdbowes usagi-kirin nurban nosada17 berthoums kourai mailund lh3 Durbin group
	Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals. [My Copy] Journal of molecular evolution, Vol. 55, No. 2. (August 2002), pp. 232-245. by J. M. Archibald, A. J. Roger posted to congruence congruence_landscapes likelihood lrt phylogenetics by aprasad on 2008-04-26 14:18:59 as

aprasad's congruence_landscapes [12 articles] Export

aprasad's tags

phylogenetics	255
tree	124
evolution	111
methods	109
genome_size	89
review	73
mammal	71
tools	71
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