aprasad's evolution [109 articles] Export

Recent papers added to aprasad's library classified by the tag evolution. You can also see everyone's evolution.

	Big and Slow: Phylogenetic Estimates of Molecular Evolution in Baleen Whales (Suborder Mysticeti) [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2427-2440. by J. A. Jackson, C. S. Baker, M. Vant, D. J. Steel, L. Medrano-Gonzalez, S. R. Palumbi posted to whale substitution_rate evolution cetartiodactyla by aprasad on 2009-10-27 22:37:00 as along with 3 people leticch angy camachorita
	Convergent adaptation of human lactase persistence in Africa and Europe [My Copy] Nature Genetics, Vol. 39, No. 1. (10 December 2006), pp. 31-40. by Sarah A. Tishkoff, Floyd A. Reed, Alessia Ranciaro, et al.Benjamin F. Voight, Courtney C. Babbitt, Jesse S. Silverman, Kweli Powell, Holly M. Mortensen, Jibril B. Hirbo, Maha Osman, Muntaser Ibrahim, Sabah A. Omar, Godfrey Lema, Thomas B. Nyambo, Jilur Ghori, Suzannah Bumpstead, Jonathan K. Pritchard, Gregory A. Wray, Panos Deloukas posted to lactase human_evolution evolution by aprasad on 2009-10-23 21:12:53 as along with 6 people and 1 group jimithystok Archaeogenetics larios theseuskf skumagai xingxu Fasting, food and evolution
	Indel-associated mutation rate varies with mating system in flowering plants. [My Copy] Molecular biology and evolution (13 October 2009) by Jesse D. Hollister, Jeffrey Ross-Ibarra, Brandon S. Gaut posted to substitution_rate plants indel inde_rate evolution by aprasad on 2009-10-21 23:06:02 as
	Conserved elements within open reading frames of mammalian Hox genes. [My Copy] Journal of biology, Vol. 8, No. 2. (06 February 2009), 17. by Joost M. Woltering, Denis Duboule posted to mcs evolution conservation coding cns by aprasad on 2009-10-09 18:24:09 as along with 2 people jm12 maximilianh
	Retroposons: Genetic Footprints on the Evolutionary Paths of Life [My Copy] Phylogenomics (2008), pp. 201-225. by Hidenori Nishihara, Norihiro Okada posted to transposon review phylogenetics evolution by aprasad on 2009-09-18 17:12:20 as
	On the need for widespread horizontal gene transfers under genome size constraint [My Copy] Biology Direct, Vol. 4, No. 1. (25 August 2009), 28. by Herve Isambert, Richard Stein posted to theory horizontal_gene_transfer genome_size evolution by aprasad on 2009-09-02 15:21:51 as along with 2 people treangen gwallau
	Targets of Balancing Selection in the Human Genome [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2755-2764. by Aida M. Andres, Melissa J. Hubisz, Amit Indap, et al.Dara G. Torgerson, Jeremiah D. Degenhardt, Adam R. Boyko, Ryan N. Gutenkunst, Thomas J. White, Eric D. Green, Carlos D. Bustamante, Andrew G. Clark, Rasmus Nielsen posted to selection population_genetics human_genome evolution balancing_selection by aprasad on 2009-08-29 13:09:19 as along with 3 people and 1 group djkt qayub sameersoi Journal picks
	Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 13, No. 3. (June 1997), pp. 235-238. by A. Rambaut, N. C. Grassly posted to tools simulation seq-gen methods evolution by aprasad on 2009-08-25 00:02:13 as
	Molecular timescales and the fossil record: a paleontological perspective [My Copy] Trends in Genetics, Vol. 20, No. 5. (01 May 2004), pp. 237-241. by Robert R. Reisz, Johannes Müller posted to time paleontology evolution by aprasad on 2009-08-24 21:30:10 as along with 1 person gjuggler
	Transposable Elements and Factors Influencing their Success in Eukaryotes [My Copy] J Hered, Vol. 100, No. 5. (7 August 2009), pp. esp065-655. by Ellen J. Pritham posted to transposon review genome_size genome_evolution evolution by aprasad on 2009-08-17 15:38:56 as along with 3 people diamantis gwallau operon
	Doubts about complex speciation between humans and chimpanzees. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 10. (05 October 2009), pp. 533-540. by Daven C. Presgraves, Soojin V. Yi posted to speciation human homo-pan-gorilla evolution coalescent chimp by aprasad on 2009-08-17 15:34:43 as along with 1 person MickElliot
	Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes [My Copy] Annual Review of Genomics and Human Genetics, Vol. 10, No. 1. (16 July 2009), pp. 285-311. by Laurent Duret, Nicolas Galtier posted to evolution gene_conversion mutation_rate recombination substitution_rate by aprasad on 2009-08-10 12:58:25 as along with 3 people lindaodenthalhesse scmelton gjuggler
	Biological Sequence Simulation for Testing Complex Evolutionary Hypotheses: indel-Seq-Gen Version 2.0 [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2581-2593. by Cory L. Strope, Kevin Abel, Stephen D. Scott, Etsuko N. Moriyama posted to evolution indel methods simulation tools by aprasad on 2009-08-09 13:25:49 as
	Genomewide Association between Insertions/Deletions and the Nucleotide Diversity in Bacteria [My Copy] Mol Biol Evol, Vol. 26, No. 10. (1 October 2009), pp. 2353-2361. by Liucun Zhu, Qiang Wang, Ping Tang, Hitoshi Araki, Dacheng Tian posted to bacteria evolution indel_rate substitution_rate by aprasad on 2009-07-12 12:11:23 as along with 2 people druvus operon
	Inverse relationship between longevity and evolutionary rate of mitochondrial proteins in mammals and birds [My Copy] Mitochondrion, Vol. 9, No. 1. (February 2009), pp. 51-57. by Nicolas Galtier, Pierre U. Blier, Benoit Nabholz posted to correlations evolution longevity substitution_rate by aprasad on 2009-07-09 21:29:51 as along with 1 person gjuggler
	Genome Desertification in Eutherians: Can Gene Deserts Explain the Uneven Distribution of Genes in Placental Mammalian Genomes? [My Copy] Journal of Molecular Evolution, Vol. 69, No. 3. (1 September 2009), pp. 207-216. by Walter Salzburger, Dirk Steinke, Ingo Braasch, Axel Meyer posted to evolution gene_deserts placental whole_genome by aprasad on 2009-07-06 22:16:05 as along with 1 person Garamonfok
	Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (12 June 2009), e1000413. by Y. Xia, E. A. Franzosa, M. B. Gerstein posted to correlations evolution genomics protein substitution_rate by aprasad on 2009-07-02 16:31:08 as along with 8 people and 1 group chica biomcgary gjuggler kiekyon michaelbarton djkt RamuAnandakrishnan bpcusack Journal picks
	The Dawn of Darwinian Medicine [My Copy] The Quarterly Review of Biology, Vol. 66, No. 1. (1991), pp. 1-22. by George C. Williams, Randolph M. Nesse posted to evolution evolutionary_medicine medicine review by aprasad on 2009-07-01 18:42:33 as along with 2 people stevanspringer qwermish
	The evolutionary forest algorithm [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1962-1968. by Scotland C. Leman, Marcy K. Uyenoyama, Michael Lavine, Yuguo Chen posted to evolution fly gene_geneology population_genetics by aprasad on 2009-06-29 22:10:27 as along with 2 people djkt ryanraaum
	Hotspots of biased nucleotide substitutions in human genes. [My Copy] PLoS biology, Vol. 7, No. 1. (27 January 2009), e26. by Jonas Berglund, Katherine S. Pollard, Matthew T. Webster posted to evolution selection substitution_rate by aprasad on 2009-06-24 02:39:54 as along with 3 people bpcusack leelarcombe biomcgary
	Dispensability of Mammalian DNA. [My Copy] Genome research, Vol. 18, No. 11. (November 2008), pp. 1743-1751. by C. Mclean, G. Bejerano posted to cns evolution model non-coding selection ultraconserved by aprasad on 2009-06-20 21:55:51 as along with 2 people gjuggler alhufton
	Genomic Features That Predict Allelic Imbalance in Humans Suggest Patterns of Constraint on Gene Expression Variation [My Copy] Mol Biol Evol, Vol. 26, No. 9. (1 September 2009), pp. 2047-2059. by Jenny Tung, Olivier Fedrigo, Ralph Haygood, Sayan Mukherjee, Gregory A. Wray posted to evolution expression regulation selection by aprasad on 2009-06-15 22:52:25 as along with 1 person djkt
	Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences [My Copy] Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 363, No. 1512. (27 December 2008), pp. 3931-3939. by S. C. Choi, B. D. Redelings, J. L. Thorne posted to evolution model model_choice molecular_evolution phylogenetics population_genetics by aprasad on 2009-06-12 16:18:08 as along with 1 person operon
	Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. [My Copy] J Mol Evol, Vol. 22, No. 2. (1985), pp. 160-174. by M. Hasegawa, H. Kishino, T. Yano posted to evolution hky85 model molecular_evolution phylogenetics substitution_rate by aprasad on 2009-06-10 19:29:57 as along with 4 people alexeid AaronDarling Natasha lusk
	Invariants of phylogenies in a simple case with discrete states [My Copy] Journal of Classification, Vol. 4, No. 1. (1 March 1987), pp. 57-71. by James A. Cavender, Joseph Felsenstein posted to evolution model molecular_evolution phylogenetics ry_coding by aprasad on 2009-06-10 16:32:53 as
	Inferring Phylogenies [My Copy] (04 September 2003) by Joseph Felsenstein posted to book evolution phylogenetics review by aprasad on 2009-06-10 16:06:15 as along with 10 people and 2 groups vtraag nuttpo ilyashl rw294 gjuggler bayesian dpollard cmm farhat dlizcano EisenLab FAB-lab
	Molecular Evolution: A Phylogenetic Approach [My Copy] (15 January 1998) by Roderic D. M. Page, Edward C. Holmes posted to book evolution phylogenetics review by aprasad on 2009-06-10 15:03:05 as along with 3 people ilyashl renewang dullhunk
	Molecular Evolution and Phylogenetics [My Copy] (15 August 2000) by Masatoshi Nei, Sudhir Kumar posted to book evolution phylogenetics review by aprasad on 2009-06-09 16:43:20 as along with 3 people nuttpo ilyashl chiufanlee
	Selectionism and Neutralism in Molecular Evolution [My Copy] Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2318-2342. by Masatoshi Nei posted to evolution selection theory by aprasad on 2009-06-06 21:06:45 as along with 11 people and 2 groups codonusage gjuggler stevanspringer operon akifumi penka BioNica timflutre ankur_iitg ArtemPankin druvus Nie FAB-lab
	The Neutral Theory of Molecular Evolution [My Copy] In The neutral theory of molecular evolution (22 February 1983) by Motoo Kimura posted to evolution molecular_clock neutral selection substitution_rate theory by aprasad on 2009-05-29 16:34:12 as along with 3 people esyoun balicea ilyashl
	Genome canalization: the coevolution of transposable and interspersed repetitive elements with single copy DNA. [My Copy] Genetica, Vol. 86, No. 1-3. (1992), pp. 215-246. by R. M. von Sternberg, G. E. Novick, G. P. Gao, R. J. Herrera posted to canalization evolution repeat selection transposon by aprasad on 2009-04-15 15:01:19 as along with 1 person sbottani
	Deletion Rate Evolution and Its Effect on Genome Size and Coding Density [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1421-1430. by Mats E. Pettersson, Charles G. Kurland, Otto G. Berg posted to evolution genome_size indel indel_rate simulation by aprasad on 2009-04-13 23:07:12 as along with 4 people operon bmajoros djkt bpcusack
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to cns evolution selection structural_variation by aprasad on 2009-03-17 21:42:59 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. [My Copy] Science (New York, N.Y.), Vol. 310, No. 5755. (16 December 2005), pp. 1782-1786. by Rebecca L. Lamason, Manzoor-Ali A. Mohideen, Jason R. Mest, et al.Andrew C. Wong, Heather L. Norton, Michele C. Aros, Michael J. Jurynec, Xianyun Mao, Vanessa R. Humphreville, Jasper E. Humbert, Soniya Sinha, Jessica L. Moore, Pudur Jagadeeswaran, Wei Zhao, Gang Ning, Izabela Makalowska, Paul M. McKeigue, David O'donnell, Rick Kittles, Esteban J. Parra, Nancy J. Mangini, David J. Grunwald, Mark D. Shriver, Victor A. Canfield, Keith C. Cheng posted to evolution population_genetics selection skin by aprasad on 2009-03-13 22:39:04 as along with 3 people and 2 groups songpku dchughes maximilianh G4ID Genetics-of-Gambling
	Why didn't Darwin discover Mendel's laws? [My Copy] Journal of Biology, Vol. 8, No. 2. (2009) by Jonathan Howard posted to darwin evolution history-of-science by aprasad on 2009-03-12 17:39:42 as along with 1 person dswan
	Evidence for turnover of functional noncoding DNA in mammalian genome evolution. [My Copy] Genomics, Vol. 84, No. 5. (November 2004), pp. 806-813. by N. G. Smith, M. Brandström, H. Ellegren posted to cns conservation evolution by aprasad on 2009-03-09 01:43:15 as along with 4 people and 2 groups galka8_diploma devin dpollard cisevol EisenLab cis-regulatory-evolution
	The Neanderthal taxonomic position: models of intra- and inter-specific craniofacial variation [My Copy] Journal of Human Evolution, Vol. 44, No. 1. (January 2003), pp. 107-132. by K. Harvati posted to evolution human morphology phil by aprasad on 2009-02-24 12:29:24 as
	The first hominin of Europe [My Copy] Nature, Vol. 452, No. 7186., pp. 465-469. by Eudald Carbonell, José, Josep M. Parés, et al.Alfredo Pérez-González, Gloria Cuenca-Bescós, Andreu Ollé, Marina Mosquera, Rosa Huguet, Jan van der Made, Antonio Rosas, Robert Sala, Josep Vallverdú, Nuria García, Darryl E. Granger, María Martinón-Torres, Xosé P. Rodríguez, Greg M. Stock, Josep M. Vergès, Ethel Allué, Francesc Burjachs, Isabel Cáceres, Antoni Canals, Alfonso Benito, Carlos Díez, Marina Lozano, Ana Mateos, Marta Navazo, Jesús Rodríguez, Jordi Rosell, Juan L. Arsuaga posted to evolution human phil by aprasad on 2009-02-24 12:17:24 as along with 2 people EsepBib xosepedro
	Man is but a worm: chordate origins. [My Copy] Genesis (New York, N.Y. : 2000), Vol. 46, No. 11. (November 2008), pp. 605-613. by F. D. Brown, A. Prendergast, B. J. Swalla posted to chordate evolution phil review by aprasad on 2009-02-24 12:10:21 as
	Chapter 1 The History and Evolution of Human Dengue Emergence [My Copy] Advances in Virus Research, Vol. 72 (2008), pp. 1-76. by N. Vasilakis, S. Weaver posted to evolution phil review by aprasad on 2009-02-24 12:07:46 as along with 2 people hroest feltesm
	Comparative genomics and the study of evolution by natural selection [My Copy] Molecular Ecology, Vol. 17, No. 21. (November 2008), pp. 4586-4596. by H. A. N. S. Ellegren posted to comparative_genomics evolution phil review by aprasad on 2009-02-24 12:04:42 as along with 6 people jlin haloin jasontsai inquil natstreet druvus
	Qualitative differences between naïve and scientific theories of evolution. [My Copy] Cognitive psychology, Vol. 52, No. 2. (March 2006), pp. 170-194. by A. Shtulman posted to evolution phil by aprasad on 2009-02-24 12:02:01 as
	Darwin's bridge between microevolution and macroevolution [My Copy] Nature, Vol. 457, No. 7231. (11 February 2009), pp. 837-842. by David N. Reznick, Robert E. Ricklefs posted to evolution phil by aprasad on 2009-02-24 12:00:40 as along with 1 person provero
	Birth of a unique enzyme from an alternative reading frame of the preexisted, internally repetitious coding sequence. [My Copy] Proc Natl Acad Sci U S A, Vol. 81, No. 8. (April 1984), pp. 2421-2425. by S. Ohno posted to evolution nylon by aprasad on 2009-02-17 21:00:33 as along with 1 person ushishir
	Numt-Mediated Double-Strand Break Repair Mitigates Deletions during Primate Genome Evolution [My Copy] PLoS Genet, Vol. 4, No. 10. (24 October 2008), e1000237. by Einat Hazkani-Covo, Shay Covo posted to evolution indel indel_rate intrinsic_features mutation mutation_rate by aprasad on 2009-02-17 16:48:15 as along with 2 people dbensasson gokcumen
	The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 159-167. by F. Hormozdiari, R. Salari, M. Hsing, et al.A. Schönhuth, S. K. Chan, S. C. Sahinalp, A. Cherkasov posted to coding comparative_genomics evolution indel protein by aprasad on 2009-02-17 15:00:44 as along with 1 person robfsouza
	Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 44. (4 November 2008), pp. 17023-17028. by John K. Pace, ClÃ©ment Gilbert, Marlena S. Clark, CÃ©dric Feschotte posted to evolution genome_evolution horizontal_gene_transfer repeats transposon by aprasad on 2008-12-11 14:57:57 as along with 6 people gwallau operon timflutre tomhebbron wimufi wsjames
	Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids [My Copy] Genome Biology, Vol. 9, No. 7. (10 July 2008), R113. by Yong, Lee S. Katz, Meryl C. Mims, Thomas D. Kocher, Soojin Yi, Jeffrey T. Streelman posted to cichlid evolution genomics population_genetics speciation by aprasad on 2008-11-07 19:59:36 as along with 6 people lskatz druvus huiminC biomcgary Neeperando natstreet
	Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic [My Copy] PLoS Genet, Vol. 4, No. 10. (3 October 2008), e1000209. by Craig D. Millar, Andrew Dodd, Jennifer Anderson, et al.Gillian C. Gibb, Peter A. Ritchie, Carlo Baroni, Michael D. Woodhams, Michael D. Hendy, David M. Lambert posted to evolution mutation_rate substitution_rate by aprasad on 2008-11-01 19:30:49 as along with 1 person operon
	Tools for simulating evolution of aligned genomic regions with integrated parameter estimation [My Copy] Genome Biology, Vol. 9, No. 10. (08 October 2008), R147. by Avinash Varadarajan, Robert K. Bradley, Ian H. Holmes posted to alignment evolution sequence simulation tools by aprasad on 2008-10-14 17:51:48 as along with 9 people inquil mhamada markusd nuin djkt treangen gjuggler pengchy druvus

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phylogenetics	249
tree	119
evolution	109
methods	107
genome_size	88
mammal	71
review	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
comparative_genomics	44
phylogenomics	44
bat	43
selection	41
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
genomics	26
human_genome	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
mutation	18
gc	17
rare_genomic_characters	17
sequence	17
algorithm	16
retrotransposon	16
substitution_rate	16
simulation	15
platyrrhini	13
congruence_landscapes	12
element	12
model	12
conservation	11
mitochondria	11
root_eutheria	11
time	11
bacteria	10
chimp	10
homo-pan-gorilla	10
isochore	10
jc	10
mcs	10
msa	10
nisc	10
parsimony	10
bac	9
functional	9
lineage_sorting	9
morphology	9
motif	9
plants	9
tfbs	9
theria	9
encode	8
flying_dna	8
horizontal_gene_transfer	8
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phil	8
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mouse	7
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sox10	6
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hmm	5
map	5
methylation	5
molecular_evolution	5
monotreme	5
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atlantogenata	4
bac_mapping	4
chip	4
chromatin	4
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exon	4
genome_paper	4
genomic	4
ild	4
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joint	4
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model_selection	4
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neutral	4
overgo	4
placental	4
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nags	2
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positive_selection	2
rat	2
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software	2
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usage	1
visualization	1
web	1
wgs	1
whale	1
xenarthra	1

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