aprasad's indel [51 articles] Export

Recent papers added to aprasad's library classified by the tag indel. You can also see everyone's indel.

	Indel-associated mutation rate varies with mating system in flowering plants. [My Copy] Molecular biology and evolution (13 October 2009) by Jesse D. Hollister, Jeffrey Ross-Ibarra, Brandon S. Gaut posted to substitution_rate plants indel inde_rate evolution by aprasad on 2009-10-21 23:06:02 as
	Phylogenetic inference under varying proportions of indel-induced alignment gaps. [My Copy] BMC evolutionary biology, Vol. 9, No. 1. (23 August 2009), 211. by Bhakti Dwivedi, Sudhindra R. Gadagkar posted to simulation phylogenetics indel gaps alignment_error by aprasad on 2009-09-02 19:42:51 as along with 1 person and 1 group ppgardne Journal picks
	Biological Sequence Simulation for Testing Complex Evolutionary Hypotheses: indel-Seq-Gen Version 2.0 [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2581-2593. by Cory L. Strope, Kevin Abel, Stephen D. Scott, Etsuko N. Moriyama posted to evolution indel methods simulation tools by aprasad on 2009-08-09 13:25:49 as
	Using evolutionary Expectation Maximization to estimate indel rates [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2294-2300. by Ian Holmes posted to indel indel_rate likelihood substitution_rate by aprasad on 2009-06-26 17:40:18 as along with 1 person druvus
	Genomic regions with distinct genomic distance conservation in vertebrate genomes. [My Copy] BMC genomics, Vol. 10, No. 1. (27 March 2009) by H. Sun, G. Skogerbø, X. Zheng, W. Liu, Y. Li posted to cns genetic_distance indel ultraconserved by aprasad on 2009-04-29 14:28:10 as along with 3 people and 1 group JustinCrocker cisevol Schmidtc cis-regulatory-evolution
	Deletion Rate Evolution and Its Effect on Genome Size and Coding Density [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1421-1430. by Mats E. Pettersson, Charles G. Kurland, Otto G. Berg posted to evolution genome_size indel indel_rate simulation by aprasad on 2009-04-13 23:07:12 as along with 4 people operon bmajoros djkt bpcusack
	Numt-Mediated Double-Strand Break Repair Mitigates Deletions during Primate Genome Evolution [My Copy] PLoS Genet, Vol. 4, No. 10. (24 October 2008), e1000237. by Einat Hazkani-Covo, Shay Covo posted to evolution indel indel_rate intrinsic_features mutation mutation_rate by aprasad on 2009-02-17 16:48:15 as along with 2 people dbensasson gokcumen
	The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 159-167. by F. Hormozdiari, R. Salari, M. Hsing, et al.A. Schönhuth, S. K. Chan, S. C. Sahinalp, A. Cherkasov posted to coding comparative_genomics evolution indel protein by aprasad on 2009-02-17 15:00:44 as along with 1 person robfsouza
	Problems and solutions for estimating indel rates and length distributions. [My Copy] Molecular biology and evolution (28 November 2008) by Reed A A. Cartwright posted to comparative_genomics indel indel_rate by aprasad on 2008-12-08 20:22:40 as along with 2 people druvus nuin
	Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. [My Copy] Nature, Vol. 455, No. 7209. (4 July 2008), pp. 105-108. by Dacheng Tian, Qiang Wang, Pengfei Zhang, et al.Hitoshi Araki, Sihai Yang, Martin Kreitman, Thomas Nagylaki, Richard Hudson, Joy Bergelson, Jian Q. Chen posted to indel mutation mutation_rate substitution_rate by aprasad on 2008-10-27 00:48:56 as along with 9 people and 1 group biomcgary Annab dakelley zwang psique djkt caseybrown bpcusack gjuggler parkinson's disease references
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to indel methods phylogenetics by aprasad on 2008-09-22 20:39:31 as along with 11 people and 1 group BioNica mhamada treangen pradiptaray zwang nuin timflutre druvus djkt gjuggler emptyhb iSEEM
	Evolution of the SEC1 gene in New World monkey lineages (Primates, Platyrrhini). [My Copy] Genetics and molecular research : GMR, Vol. 7, No. 3. (2008), pp. 663-678. by B. N. Borges, T. S. Paiva, M. L. Harada posted to indel phylogenetics platyrrhini single_gene by aprasad on 2008-09-02 16:48:19 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to alignment indel methods by aprasad on 2008-06-23 19:05:48 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Sequence Context affects the rate of short insertions and deletions in flies and primates [My Copy] Genome Biology, Vol. 9 (21 February 2008), R37. by Amos Tanay, Eric D. Siggia posted to drosophila evolution human_genome indel mutation_rate by aprasad on 2008-05-19 15:38:57 as along with 8 people emptyhb timflutre bpcusack djkt lusk biomcgary gjuggler brant
	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? [My Copy] BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95. by Stefanie Hartmann, Todd J. Vision posted to alignment est indel phylogenetics phylogenomics by aprasad on 2008-05-09 17:56:28 as along with 7 people and 2 groups sriesenfeld skembel treangen natstreet druvus stajich Patola iSEEM Mycology
	Incorporating gaps as phylogenetic characters across eight DNA regions: ramifications for North American Psoraleeae (Leguminosae). [My Copy] Molecular phylogenetics and evolution, Vol. 46, No. 2. (February 2008), pp. 532-546. by A. N. Egan, K. A. Crandall posted to indel methods phylogenetics review by aprasad on 2008-05-07 19:35:44 as
	A phylogenetic analysis of indel dynamics in the cotton genus. [My Copy] Molecular biology and evolution, Vol. 25, No. 7. (9 April 2008), pp. 1415-1428. by Corrinne E. E. Grover, Yeisoo Yu, Rod A. A. Wing, Andrew H. H. Paterson, Jonathan F. F. Wendel posted to evolution genome_size genomics indel plant by aprasad on 2008-04-13 03:44:11 as along with 2 people lusk druvus
	Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the partial S6K1 gene sequences and implication of indel sites in intron 1. [My Copy] Sci China C Life Sci, Vol. 50, No. 6. (December 2007), pp. 780-788. by X. Kong, X. Wang, X. Gan, J. Li, S. He posted to fish indel phylogenetics tree by aprasad on 2008-03-23 16:07:45 as
	The relative performance of indel-coding methods in simulations [My Copy] Molecular Phylogenetics and Evolution, Vol. 44, No. 2. (August 2007), pp. 724-740. by Mark P. Simmons, Kai Muller, Andrew P. Norton posted to indel methods phylogenetics by aprasad on 2008-02-28 23:09:55 as along with 1 person druvus
	A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (14 September 2007), e176. by Erika M. Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D. Makova posted to chimp human indel mutation mutation_rate recombination replication by aprasad on 2007-12-11 19:53:20 as along with 4 people and 1 group timflutre Iden-J_GluR djkt cisevol cis-regulatory-evolution
	Biased distributions and decay of LINEs in the chicken genome [My Copy] Genetics (18 October 2007), genetics.106.061861. by Gyorgy Abrusan, Hans J. Krambeck, Thomas Junier, Joti Giordano, Peter E. Warburton posted to chicken genome_evolution indel line mutation repeats by aprasad on 2007-12-11 15:28:25 as along with 1 person dchughes
	The majority of recent short DNA insertions in the human genome are tandem duplications. [My Copy] Mol Biol Evol, Vol. 24, No. 5. (May 2007), pp. 1190-1197. by P. W. Messer, P. F. Arndt posted to human_genome indel mutation mutation_rate by aprasad on 2007-09-17 18:43:38 as along with 2 people dchughes PetrovLab
	INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events. [My Copy] Nucleic Acids Res (21 May 2007) by Feng, Chueng, Trees posted to indel methods tools by aprasad on 2007-09-13 22:20:10 as along with 5 people and 1 group natstreet druvus guhjy dpollard lilou EisenLab
	Indel-Based Evolutionary Distance and MouseâHuman Divergence [My Copy] Genome Research, Vol. 14, No. 8. (1 August 2004), pp. 1610-1616. by Aleksey Y. Ogurtsov, Shamil Sunyaev, Alexey S. Kondrashov posted to genetic_distance human indel mouse mutation_rate by aprasad on 2007-09-13 22:04:20 as along with 3 people gregoryross timflutre emptyhb
	Distribution of indel lengths [My Copy] Proteins: Structure, Function, and Genetics, Vol. 45, No. 1. (2001), pp. 102-104. by Bin Qian, Richard A. Goldstein posted to coding indel mutation_rate by aprasad on 2007-09-13 22:01:58 as
	Patterns and rates of indel evolution in processed pseudogenes from humans and murids [My Copy] Gene In Junk DNA: The Role and the Evolution of Non-Coding Sequences, Vol. 205, No. 1-2. (31 December 1997), pp. 191-202. by Ron Ophir, Dan Graur posted to human indel mouse mutation mutation_rate by aprasad on 2007-09-13 22:00:02 as
	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. P. Ponting, Jotun Hein posted to indel methods mutation_rate neutral selection by aprasad on 2007-09-13 20:48:39 as along with 12 people and 2 groups timflutre gjuggler nklee eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
	Functional constraint and small insertions and deletions in the ENCODE regions of the human genome [My Copy] Genome Biology, Vol. 8 (04 September 2007), R180. by Taane G. Clark, Toby Andrew, Gregory M. Cooper, Elliot H. Marguiles, James C. Mullikin, David J. Balding posted to encode indel mutation_rate regulatory by aprasad on 2007-09-12 22:35:57 as along with 3 people and 1 group cisevol ryanraaum caseybrown cis-regulatory-evolution
	Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 289-297. by Jaebum Kim, Saurabh Sinha posted to alignment indel tools by aprasad on 2007-09-02 13:38:06 as along with 4 people and 1 group timflutre gjuggler druvus indigoviolet EisenLab
	Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences [My Copy] Journal of Theoretical Biology, Vol. 244, No. 4. (21 February 2007), pp. 621-630. by Carole Knibbe, Olivier Mazet, Fabien Chaudier, Jean M. Fayard, Guillaume Beslon posted to evolution genome_size indel mutation selection by aprasad on 2007-08-28 13:43:46 as along with 2 people mjoach timflutre
	Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007) by G. Lunter posted to evolution human indel mouse mutation_rate whole_genome by aprasad on 2007-08-07 22:22:46 as along with 4 people and 1 group treangen AaronDarling mailund elfar Bioinformatics
	Insertion-deletion biases and the evolution of genome size. [My Copy] Gene, Vol. 324 (7 January 2004), pp. 15-34. by T. R. Gregory posted to genome_size indel mutation_rate by aprasad on 2007-08-03 16:46:53 as along with 2 people lusk brant
	Mutational equilibrium model of genome size evolution. [My Copy] Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 531-544. by D. A. Petrov posted to genome_size indel mutation_rate by aprasad on 2007-08-03 16:45:44 as along with 3 people and 1 group operon dpollard timflutre EisenLab
	Exact and heuristic algorithms for the Indel Maximum Likelihood Problem. [My Copy] J Comput Biol, Vol. 14, No. 4. (May 2007), pp. 446-461. by A. B. Diallo, V. Makarenkov, M. Blanchette posted to algorithm evolution indel methods model phylogenetics by aprasad on 2007-07-21 21:34:52 as along with 2 people timflutre gjuggler
	Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree. [My Copy] Mol Biol Evol, Vol. 21, No. 12. (December 2004), pp. 2299-2309. by Pecon J. Slattery, Pearks A. J. Wilkerson, W. J. Murphy, S. J. O'Brien posted to homoplasy indel repeat transposon by aprasad on 2007-07-12 21:01:59 as
	Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates [My Copy] Genome Res., Vol. 15, No. 9. (1 September 2005), pp. 1243-1249. by Louie N. van de Lagemaat, Liane Gagnier, Patrik Medstrand, Dixie L. Mager posted to deletion homoplasy indel repeat transposon by aprasad on 2007-07-12 20:57:37 as
	Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals. [My Copy] Mamm Genome, Vol. 16, No. 9. (September 2005), pp. 651-660. by L. Yu, Y. P. Zhang posted to homoplasy indel repeat transposon by aprasad on 2007-07-12 20:55:25 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Indel evolution of mammalian introns and the utility of non-coding nuclear markers in eutherian phylogenetics [My Copy] Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 827-837. by Conrad A. Matthee, Geeta Eick, Sandi W. Munro, Claudine Montgelard, Amanda T. Pardini, Terence J. Robinson posted to genome_size indel indel_rate mammal phylogenetics tree by aprasad on 2007-06-21 20:45:23 as along with 1 person lilou
	Incorporating indel information into phylogeny estimation for rapidly emerging pathogens [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (14 March 2007), 40. by Benjamin D. Redelings, Marc A. Suchard posted to alignment bayesian indel methods phylogenetics by aprasad on 2007-05-14 01:38:56 as along with 5 people and 1 group timflutre druvus operon dpollard stajich EisenLab
	Using genomic data to unravel the root of the placental mammal phylogeny. [My Copy] Genome Res, Vol. 17, No. 4. (April 2007), pp. 413-421. by W. J. Murphy, T. H. Pringle, T. A. Crider, M. S. Springer, W. Miller posted to indel mammal phylogenetics phylogenomics rare_genomic_characters root_eutheria transposon tree by aprasad on 2007-05-02 14:40:43 as along with 2 people djkt maximilianh
	Intron Length Evolution in Drosophila [My Copy] Mol Biol Evol, Vol. 23, No. 11. (1 August 2006), pp. 2203-2213. by Daven C. C. Presgraves posted to indel genome_size genome_evolution by aprasad on 2007-01-22 16:22:57 as along with 6 people and 1 group climb0910 druvus JAShapiro indigoviolet dpollard lilou EisenLab
	Pattern and Rate of Indel Evolution Inferred from Whole Chloroplast Intergenic Regions in Sugarcane, Maize and Rice. [My Copy] DNA Res (16 November 2006) by Kyoko Yamane, Kentaro Yano, Taihachi Kawahara posted to evolution indel plants by aprasad on 2006-11-21 14:00:52 as
	Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution. [My Copy] J Mol Evol, Vol. 63, No. 5. (November 2006), pp. 682-690. by A. Wetterbom, M. Sevov, L. Cavelier, T. F. Bergström posted to chimp evolution human_genome indel primate by aprasad on 2006-11-15 15:34:16 as
	The Platypus Is in Its Place: Nuclear Genes and Indels Confirm the Sister Group Relation of Monotremes and Therians [My Copy] Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 587-597. by Teun van Rheede, Trijntje Bastiaans, David N. Boone, Blair S. Hedges, Wilfried W. de Jong, Ole Madsen posted to indel monotreme phylogenetics rare_genomic_characters root theria tree by aprasad on 2006-10-26 22:04:13 as along with 2 people and 2 groups davidglenn63 dchughes G4ID Genetics-of-Gambling
	Incorporating information from length-mutational events into phylogenetic analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 38, No. 3. (March 2006), pp. 667-676. by Kai Muller posted to tools phylogenetics methods indel by aprasad on 2006-08-25 14:32:21 as along with 2 people and 1 group druvus cmm FAB-lab
	Heterotachy in mammalian promoter evolution. [My Copy] PLoS Genet, Vol. 2, No. 4. (April 2006) by M. S. Taylor, C. Kai, J. Kawai, P. Carninci, Y. Hayashizaki, C. A. Semple posted to evolution indel mammal mutation_rate promoter regulatory whole_genome by aprasad on 2006-06-27 13:35:17 as along with 7 people and 1 group galka8_diploma djkt bpcusack kentsis olympos cisevol gjuggler cis-regulatory-evolution
	Large-scale survey for potentially targetable indels in bacterial and protozoan proteins. [My Copy] Proteins (28 November 2005) by Artem Cherkasov, Shang, Devki Nandan, Neil E. E. Reiner posted to genome indel by aprasad on 2005-12-07 20:52:52 as along with 2 people and 2 groups ana martainn structural_bioinformatics Bioinformatics
	Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes. [My Copy] Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348. by Z. Zhang, M. Gerstein posted to evolution genome_evolution genomics indel mutation_rate by aprasad on 2005-09-15 21:42:56 as along with 1 person timflutre
	Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes. [My Copy] Genome Res, Vol. 14, No. 4. (April 2004), pp. 555-566. by M. S. Taylor, C. P. Ponting, R. R. Copley posted to coding evolution indel by aprasad on 2005-09-15 21:38:20 as along with 2 people and 3 groups ana gjuggler structural_bioinformatics Bioinformatics Nie
	Incongruent patterns of local and global genome size evolution in cotton. [My Copy] Genome Res, Vol. 14, No. 8. (August 2004), pp. 1474-1482. by C. E. Grover, H. Kim, R. A. Wing, A. H. Paterson, J. F. Wendel posted to evolution genome_size indel by aprasad on 2005-09-15 21:31:29 as

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phylogenetics	249
tree	119
evolution	109
methods	107
genome_size	88
mammal	71
review	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
comparative_genomics	44
phylogenomics	44
bat	43
selection	41
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
genomics	26
human_genome	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
mutation	18
gc	17
rare_genomic_characters	17
sequence	17
algorithm	16
retrotransposon	16
substitution_rate	16
simulation	15
platyrrhini	13
congruence_landscapes	12
element	12
model	12
conservation	11
mitochondria	11
root_eutheria	11
time	11
bacteria	10
chimp	10
homo-pan-gorilla	10
isochore	10
jc	10
mcs	10
msa	10
nisc	10
parsimony	10
bac	9
functional	9
lineage_sorting	9
morphology	9
motif	9
plants	9
tfbs	9
theria	9
encode	8
flying_dna	8
horizontal_gene_transfer	8
long_branch_attraction	8
non-coding	8
phil	8
recombination	8
speciation	8
mouse	7
tree_visualization	7
book	6
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consensus	6
drosophila	6
indel_rate	6
missing_data	6
model_choice	6
molecular_clock	6
nucleotypic_effect	6
phylogenetic_accuracy	6
repeat	6
rodents	6
signature	6
sox10	6
time_tree	6
binfo	5
bird	5
chicken	5
colorectal_cancer	5
cpg	5
cytogenetics	5
enhancer	5
fish	5
gdf6	5
gene_geneology	5
glires	5
hmm	5
map	5
methylation	5
molecular_evolution	5
monotreme	5
ncrna	5
ortholog	5
plant	5
promoter	5
rearrangement	5
theory	5
ultraconserved	5
variation	5
yeast	5
afrotheria	4
alignment_error	4
analysis	4
atlantogenata	4
bac_mapping	4
chip	4
chromatin	4
correlations	4
exon	4
genome_paper	4
genomic	4
ild	4
intrinsic_features	4
joint	4
karyotype	4
model_selection	4
murphy	4
neutral	4
overgo	4
placental	4
protein	4
ry_coding	4
signal	4
splicing	4
star_paradox	4
supertree	4
ucsc	4
zooseq	4
bias	3
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centromere	3
cetartiodactyla	3
development	3
dinosaur	3
dog	3
epigenetics	3
exactplus	3
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homoplasy	3
island	3
laurasiatheria	3
marsupionta	3
microinversions	3
mrbayes	3
partitioning	3
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root	3
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sine	3
skin	3
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aa	2
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comment	2
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est	2
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hox	2
human_evolution	2
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insertion_site_bias	2
intraspecifc_variation	2
line	2
lrt	2
mammoth	2
medical_genetics	2
mexico	2
microrna	2
microsatellite	2
nags	2
non-phylogenetic_signal	2
outgroup	2
paleontology	2
paralog	2
phastcons	2
pipmaker	2
positive_selection	2
rat	2
raxml	2
reptile	2
rodent	2
saturation	2
sliding_window	2
software	2
structural_variation	2
tba	2
transfac	2
tree_comparison	2
454	1
alligator	1
amphibian	1
amphipod	1
ancestral_state	1
ancient_dna	1
antisense	1
arabadopsis	1
archaea	1
balancing_selection	1
bed	1
biofuel	1
block_bootstrap	1
bootsrap	1
branch_length	1
cambrian	1
canalization	1
cat	1
catarrhini	1
c_elegans	1
chip-chip	1
chip-seq	1
chordate	1
chr22	1
chromosome	1
clinseq	1
cnv	1
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consel	1
cow	1
coyote	1
darwin	1
dcodeorg	1
deletion	1
demography	1
densitometry	1
design	1
disease	1
dna	1
dna_loss	1
drug_resistance	1
enzyme	1
euarchontoglires	1
evolutionary_medicine	1
faire	1
feulgen	1
finishing	1
fitness	1
fly	1
fossil	1
frog	1
fugu	1
galaxy	1
gaps	1
gblocks	1
gencode	1
gene_conversion	1
gene_deserts	1
gene_flow	1
genetic_code	1
genetic_disease	1
gene_tree	1
goldfish	1
hidden	1
histone	1
history	1
history-of-science	1
hky85	1
honeybee	1
horse	1
hplc	1
hubmed	1
human_microbiome	1
illumina	1
imprinting	1
inde_rate	1
jalview	1
kinship	1
lactase	1
lemur	1
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longevity	1
mammalian	1
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mom	1
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nature	1
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nj	1
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pubmed	1
r	1
recon	1
regulation	1
replication	1
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sampling	1
search	1
seq-gen	1
shark	1
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single_gene	1
social_class	1
soop	1
spacing	1
strand	1
structure	1
supermatrix	1
systematic	1
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tag	1
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taxon_sampling	1
tetraodon	1
textbook	1
thomas	1
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trees	1
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trophoblast	1
tuatara	1
upgma	1
uprobe	1
usage	1
visualization	1
web	1
wgs	1
whale	1
xenarthra	1

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