aprasad's likelihood [24 articles] Export

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	Rapid Evaluation of the Phylogenetic Congruence of Sequence Data Using Likelihood Ratio Tests [My Copy] Mol Biol Evol, Vol. 17, No. 12. (1 December 2000), pp. 1988-1992. by Peter J. Waddell, Hirohisa Kishino, Rissa Ota posted to phylogenetics partitioning lrt likelihood congruence by aprasad on 2009-08-22 19:51:23 as
	Identification of deleterious mutations within three human genomes [My Copy] Genome Research, Vol. 19, No. 9. (3 September 2009), pp. 1553-1561. by Sung Chun, Justin C. Fay posted to functional_genomics genetic_disease likelihood medical_genetics mutation by aprasad on 2009-08-10 15:10:32 as along with 9 people xingxu operon bpcusack djkt gjuggler jessopher fenghezi jbhiatt daforerog
	STEM: species tree estimation using maximum likelihood for gene trees under coalescence [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 971-973. by Laura S. Kubatko, Bryan C. Carstens, Lacey L. Knowles posted to congruence gene_geneology likelihood methods phylogenetics tools by aprasad on 2009-06-27 01:51:28 as along with 4 people lizbiogen nuin druvus djkt
	Using evolutionary Expectation Maximization to estimate indel rates [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2294-2300. by Ian Holmes posted to indel indel_rate likelihood substitution_rate by aprasad on 2009-06-26 17:40:18 as along with 1 person druvus
	Reconstruction of evolutionary trees [My Copy] In Phenetic and Phylogenetic Classification (1964), pp. 64-76. by A. W. F. Edwards, L. L. Cavalli-Sforza edited by V. H. Heywood, J. Mcneill posted to likelihood methods parsimony phylogenetics by aprasad on 2009-06-09 20:41:58 as
	RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2688-2690. by Stamatakis, Alexandros posted to likelihood phylogenetics raxml tools by aprasad on 2009-03-05 22:48:16 as along with 7 people hryk operon jpsullivan anisbet druvus johanviklund dmp
	MODELTEST: testing the model of DNA substitution [My Copy] Bioinformatics, Vol. 14, No. 9. (1 October 1998), pp. 817-818. by D. Posada, Ka Crandall posted to likelihood model_selection modeltest tools by aprasad on 2009-03-05 22:24:53 as along with 3 people lmichan eustatic jjhunt
	A Rapid Bootstrap Algorithm for the RAxML Web Servers [My Copy] Syst Biol, Vol. 57, No. 5. (1 October 2008), pp. 758-771. by Stamatakis, Alexandros, Hoover, Paul, Rougemont, Jacques posted to likelihood phylogenetics raxml tools by aprasad on 2008-10-23 04:28:27 as along with 2 people sim82 druvus
	Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap [My Copy] Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 665-674. by Kim, Junhyong, Sanderson, Michael posted to likelihood methods model partitioning phylogenetics by aprasad on 2008-10-19 20:35:56 as along with 2 people skembel nuin
	Phylogenetic Mixture Models Can Reduce Node-Density Artifacts [My Copy] Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293. by Chris Venditti, Andrew Meade, Mark Pagel posted to likelihood long_branch_attraction methods mixture_models phylogenetics simulation by aprasad on 2008-04-30 17:17:03 as along with 1 person and 1 group rvosa FAB-lab
	Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals. [My Copy] Journal of molecular evolution, Vol. 55, No. 2. (August 2002), pp. 232-245. by J. M. Archibald, A. J. Roger posted to congruence congruence_landscapes likelihood lrt phylogenetics by aprasad on 2008-04-26 14:18:59 as
	Influence Function for Robust Phylogenetic Reconstructions [My Copy] Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 869-873. by Avner B. Hen, Mahendra Mariadassou, Marie A. Poursat, Philippe Vandenkoornhuyse posted to congruence likelihood methods phylogenetics by aprasad on 2008-04-26 13:55:27 as
	Local conservation scores without a priori assumptions on neutral substitution rates [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Janis Dingel, Pavol Hanus, Niccolo Leonardi, Joachim Hagenauer, Juergen Zech, Jakob Mueller posted to conservation likelihood mcs by aprasad on 2008-04-15 23:28:07 as along with 4 people and 2 groups daveGerrard maximilianh RamuAnandakrishnan cisevol cis-regulatory-evolution BergmanLab
	Increasing the Efficiency of Searches for the Maximum Likelihood Tree in a Phylogenetic Analysis of up to 150 Nucleotide Sequences. [My Copy] Syst Biol, Vol. 56, No. 6. (December 2007), pp. 988-1010. by D. A. Morrison posted to likelihood methods phylogenetics tools by aprasad on 2008-03-29 08:24:22 as along with 2 people druvus akifumi
	Tree disagreement: Measuring and testing incongruence in phylogenies [My Copy] Journal of Biomedical Informatics In Phylogenetic Inferencing: Beyond Biology, Vol. 39, No. 1. (February 2006), pp. 86-102. by Paul J. Planet posted to congruence likelihood methods parsimony phylogenetics review by aprasad on 2008-01-10 15:46:05 as along with 1 person akifumi
	Rooting the eutherian tree: the power and pitfalls of phylogenomics [My Copy] Genome Biology, Vol. 8 (21 September 2007), R199. by Hidenori Nishihara, Norihiro Okada, Masami Hasegawa posted to likelihood mammal phylogenetics root_eutheria tree by aprasad on 2007-09-24 15:19:21 as along with 1 person maximilianh
	CONSEL: for assessing the confidence of phylogenetic tree selection. [My Copy] Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1246-1247. by H. Shimodaira, M. Hasegawa posted to consel likelihood methods tools by aprasad on 2007-08-31 21:55:04 as along with 2 people druvus polpotak
	Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation. [My Copy] BMC Evol Biol, Vol. 5, No. 1. (28 January 2005) by J. C. Mar, T. J. Harlow, M. A. Ragan posted to bayesian bootstrap likelihood methods by aprasad on 2007-04-05 21:26:16 as along with 2 people balajis AaronDarling
	Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous [My Copy] Nature, Vol. 431, No. 7011. (21 October 2004), pp. 980-984. by Bryan Kolaczkowski, Joseph W. Thornton posted to algorithm bayesian likelihood methods parsimony phylogenetics simulation by aprasad on 2007-02-23 20:24:04 as along with 2 people skembel tale
	An approximately unbiased test of phylogenetic tree selection. [My Copy] Syst Biol, Vol. 51, No. 3. (June 2002), pp. 492-508. by H. Shimodaira posted to algorithm likelihood methods phylogenetics by aprasad on 2006-09-11 19:38:21 as along with 3 people oliviawi druvus renewang
	Likelihood-based tests of topologies in phylogenetics. [My Copy] Syst Biol, Vol. 49, No. 4. (December 2000), pp. 652-670. by N. Goldman, J. P. Anderson, A. G. Rodrigo posted to algorithm likelihood methods phylogenetics by aprasad on 2006-09-11 18:33:59 as along with 2 people druvus fungal
	A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. [My Copy] Systematic biology, Vol. 52, No. 5. (October 2003), pp. 696-704. by S. Guindon, O. Gascuel posted to likelihood phylogenetics phyml tools by aprasad on 2006-08-25 14:53:12 as along with 13 people and 1 group chica calderonv swp09 oceanwind BioNica druvus bpb chrn lyongu treangen Haggan cdallett Auger Dead 60's
	Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. [My Copy] Syst Biol, Vol. 53, No. 5. (October 2004), pp. 793-808. by D. Posada, T. R. Buckley posted to likelihood phylogenetics review by aprasad on 2006-05-19 19:17:43 as along with 2 people druvus almostc
	Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome [My Copy] Journal of Biomedical Informatics In Phylogenetic Inferencing: Beyond Biology, Vol. 39, No. 1. (February 2006), pp. 51-61. by Carolin Kosiol, Lee Bofkin, Simon Whelan posted to likelihood phylogenetics review by aprasad on 2006-05-19 18:57:21 as along with 4 people katholt gjuggler akifumi BioNica

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phylogenetics	248
tree	119
evolution	109
methods	107
genome_size	88
review	71
mammal	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
comparative_genomics	44
phylogenomics	44
bat	43
selection	41
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
human_genome	26
genomics	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
mutation	18
gc	17
sequence	17
rare_genomic_characters	17
retrotransposon	16
algorithm	16
substitution_rate	16
simulation	15
platyrrhini	13
element	12
model	12
congruence_landscapes	12
mitochondria	11
root_eutheria	11
time	11
conservation	11
mcs	10
nisc	10
jc	10
homo-pan-gorilla	10
chimp	10
msa	10
bacteria	10
isochore	10
parsimony	10
lineage_sorting	9
morphology	9
functional	9
plants	9
motif	9
tfbs	9
bac	9
theria	9
encode	8
recombination	8
long_branch_attraction	8
speciation	8
non-coding	8
flying_dna	8
horizontal_gene_transfer	8
phil	8
mouse	7
tree_visualization	7
signature	6
repeat	6
model_choice	6
phylogenetic_accuracy	6
nucleotypic_effect	6
time_tree	6
indel_rate	6
molecular_clock	6
sox10	6
consensus	6
coalescent	6
book	6
drosophila	6
rodents	6
missing_data	6
cytogenetics	5
gdf6	5
variation	5
bird	5
ultraconserved	5
fish	5
gene_geneology	5
colorectal_cancer	5
chicken	5
enhancer	5
theory	5
plant	5
map	5
molecular_evolution	5
hmm	5
ortholog	5
ncrna	5
yeast	5
monotreme	5
binfo	5
rearrangement	5
methylation	5
promoter	5
cpg	5
chip	4
genome_paper	4
protein	4
ild	4
bac_mapping	4
neutral	4
model_selection	4
placental	4
star_paradox	4
exon	4
murphy	4
correlations	4
chromatin	4
joint	4
glires	4
zooseq	4
ucsc	4
ry_coding	4
genomic	4
analysis	4
atlantogenata	4
karyotype	4
splicing	4
afrotheria	4
intrinsic_features	4
alignment_error	4
supertree	4
overgo	4
signal	4
simultaneous_inference	3
exactplus	3
mrbayes	3
sequencing	3
root	3
synteny	3
laurasiatheria	3
partitioning	3
skin	3
dinosaur	3
development	3
centromere	3
bootstrap	3
microinversions	3
cetartiodactyla	3
island	3
bioinformatics	3
dog	3
marsupionta	3
epigenetics	3
functional_genomics	3
bias	3
phylogenetic_signal	3
homoplasy	3
support	3
sine	3
saturation	2
est	2
lrt	2
pipmaker	2
hox	2
carnivore	2
duplication	2
boreoeutheria	2
genetic_distance	2
outgroup	2
database	2
experimental	2
browser	2
transfac	2
alu	2
structural_variation	2
intraspecifc_variation	2
comment	2
rodent	2
ecology	2
error	2
raxml	2
sliding_window	2
microsatellite	2
microrna	2
dnasei	2
career	2
phastcons	2
epigraph	2
software	2
medical_genetics	2
eulipotyphla	2
nags	2
genome_assembly	2
line	2
hybridization	2
aa	2
insertion_site_bias	2
breakpoints	2
codon	2
rat	2
mexico	2
tba	2
cichlid	2
base_composition	2
reptile	2
coalhmm	2
expression	2
positive_selection	2
tree_comparison	2
human_evolution	2
fpc	2
paralog	2
paleontology	2
mammoth	2
non-phylogenetic_signal	2
assembly	2
systematic	1
computational_model	1
genetic_disease	1
hplc	1
biofuel	1
fossil	1
replication	1
perissodactylas	1
dcodeorg	1
gencode	1
archaea	1
systematic_bias	1
disease	1
cow	1
cambrian	1
textbook	1
tree_shrew	1
mammalian	1
goldfish	1
454	1
enzyme	1
clinseq	1
overdispersion	1
recon	1
metagenomics	1
hidden	1
seq-gen	1
conference	1
mom	1
medicine	1
method	1
feulgen	1
targeted_sequencing	1
inde_rate	1
finishing	1
tag	1
drug_resistance	1
c_elegans	1
thomas	1
faire	1
platypus	1
tandem_duplications	1
nature	1
spacing	1
search	1
amphibian	1
histone	1
linkage	1
kinship	1
nj	1
chordate	1
mcclintock	1
consel	1
human_microbiome	1
imprinting	1
gene_conversion	1
galaxy	1
sampling	1
gblocks	1
transcription	1
regulation	1
alligator	1
block_bootstrap	1
demography	1
visualization	1
social_class	1
phyml	1
soop	1
structure	1
evolutionary_medicine	1
history	1
branch_length	1
wgs	1
pseudogene	1
ancient_dna	1
bed	1
xenarthra	1
tuatara	1
mulliken	1
neandertal	1
orangutan	1
deletion	1
hky85	1
nylon	1
design	1
gene_deserts	1
tandem_repeats	1
genetic_code	1
antisense	1
horse	1
lactase	1
supermatrix	1
dna_loss	1
amphipod	1
whale	1
honeybee	1
cat	1
coyote	1
tetraodon	1
chr22	1
metazoa	1
dna	1
pubmed	1
silkworm	1
nomenclature	1
densitometry	1
longevity	1
trophoblast	1
bootsrap	1
single_gene	1
mixture_models	1
fitness	1
upgma	1
reverse_genetics	1
balancing_selection	1
primer	1
hubmed	1
web	1
strand	1
cnv	1
taxon_sampling	1
trees	1
me	1
nextgen_seq	1
gaps	1
arabadopsis	1
lemur	1
catarrhini	1
chip-seq	1
numts	1
modeltest	1
frog	1
gene_flow	1
illumina	1
jalview	1
r	1
chromosome	1
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gene_tree	1
usage	1
molecular_biology	1
melan-a	1
canalization	1
pig	1
muntjak	1
uprobe	1
history-of-science	1
shark	1
fugu	1
chip-chip	1
fly	1
darwin	1
euarchontoglires	1
opossum	1
physical	1

aprasad's likelihood [24 articles] Export

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