aprasad's mammal [71 articles] Export

Recent papers added to aprasad's library classified by the tag mammal. You can also see everyone's mammal.

	Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic data. [My Copy] Molecular phylogenetics and evolution, Vol. 52, No. 3. (10 September 2009), pp. 660-664. by Zhuo-Cheng C. Hou, Roberto Romero, Derek E. Wildman posted to whole_genome tree phylogenomics phylogenetics mammal laurasiatheria coding by aprasad on 2009-09-02 19:24:58 as along with 1 person and 1 group avilella Ensembl Compara citations
	Mosaic retroposon insertion patterns in placental mammals. [My Copy] Genome research, Vol. 19, No. 5. (4 May 2009), pp. 868-875. by G. Churakov, J. O. Kriegs, R. Baertsch, A. Zemann, J. Brosius, J. Schmitz posted to mammal phylogenetics placental rare_genomic_characters transposon tree by aprasad on 2009-06-17 22:02:47 as along with 1 person provero
	Support Patterns from Different Outgroups Provide a Strong Phylogenetic Signal [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1259-1272. by Adrian Schneider, Gina M. Cannarozzi posted to mammal methods outgroup phylogenetics tree by aprasad on 2009-05-18 23:29:04 as
	Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 13. (31 March 2009), pp. 5235-5240. by H. Nishihara, S. Maruyama, N. Okada posted to boreoeutheria mammal phylogenetics rare_genomic_characters transposon tree by aprasad on 2009-04-13 15:58:10 as
	A new symmetrodont mammal from China and its implications for mammalian evolution. [My Copy] Nature, Vol. 390, No. 6656. (13 November 1997), pp. 137-142. by Y. Hu, Y. Wang, Z. Luo, C. Li posted to mammal morphology phylogenetics theria by aprasad on 2009-03-05 23:01:31 as
	Marsupials and Eutherians reunited: genetic evidence for the Theria hypothesis of mammalian evolution [My Copy] Mammalian Genome, Vol. 12, No. 7. (21 July 2001), pp. 513-517. by Keith J. Killian, Thomas R. Buckley, Niall Stewart, Barry L. Munday, Randy L. Jirtle posted to mammal phylogenetics theria tree by aprasad on 2009-03-05 20:36:18 as
	Molecular evidence from retroposons that whales form a clade within even-toed ungulates. [My Copy] Nature, Vol. 388, No. 6643. (14 August 1997), pp. 666-670. by M. Shimamura, H. Yasue, K. Ohshima, et al.H. Abe, H. Kato, T. Kishiro, M. Goto, I. Munechika, N. Okada posted to cetartiodactyla mammal phylogenetics tree by aprasad on 2009-03-05 14:51:05 as
	New cell or new cycle? [My Copy] Genes & development, Vol. 22, No. 21. (1 November 2008), pp. 2908-2913. by O. Ganier, M. Mechali posted to genome_size mammal trophoblast by aprasad on 2008-11-09 17:35:48 as
	Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations. [My Copy] BMC Evolutionary Biology, Vol. 8 (27 May 2008), 162. by Bjorn M. Hallstrom, Axel Janke posted to coding mammal phylogenetics phylogenomics tree by aprasad on 2008-09-30 01:09:32 as
	Impact of increased character sampling on the phylogeny of Cetartiodactyla (Mammalia): combined analysis including fossils [My Copy] Cladistics, Vol. 24, No. 4. (2008), pp. 397-442. by Maureen A. O'Leary, John Gatesy posted to cetartiodactyla mammal morphology tree by aprasad on 2008-09-12 22:52:28 as
	Mitogenomic relationships of placental mammals and molecular estimates of their divergences. [My Copy] Gene, Vol. 421, No. 1-2. (15 September 2008), pp. 37-51. by U. Arnason, J. A. Adegoke, A. Gullberg, E. H. Harley, A. Janke, M. Kullberg posted to mammal mitochondria time_tree tree by aprasad on 2008-08-13 20:43:43 as
	Morphology and Placental Mammal Phylogeny [My Copy] Systematic Biology, Vol. 57, No. 3. (2008), pp. 499-503. by Mark S. Springer, Robert W. Meredith, Eduardo Eizirik, Emma Teeling, William J. Murphy posted to mammal morphology phylogenetics tree by aprasad on 2008-06-24 21:17:43 as
	Confirming the phylogeny of mammals by use of large comparative sequence data sets. [My Copy] Molecular biology and evolution, Vol. 25, No. 9. (2 May 2008), pp. 1795-1808. by Arjun B. Prasad, Marc W. Allard, Eric D. Green posted to atlantogenata mammal nisc phylogenetics phylogenomics placental tree by aprasad on 2008-05-07 13:34:54 as along with 4 people hdopazo gjuggler dchughes Stew
	Mammalian evolution and biomedicine: new views from phylogeny. [My Copy] Biol Rev Camb Philos Soc, Vol. 82, No. 3. (August 2007), pp. 375-392. by M. S. Springer, W. J. Murphy posted to mammal phylogenetics review by aprasad on 2008-03-08 12:11:14 as along with 1 person HugoMarcelo
	Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia [My Copy] Zoologica Scripta, Vol. 37, No. 2. (March 2008), pp. 115-127. by Kullberg, Morgan, Hallstrom, et al.M. Bjorn, Arnason, Ulfur, Janke, Axel posted to mammal marsupionta phylogenetics root theria by aprasad on 2008-02-29 13:50:05 as
	Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods [My Copy] Systematic Biology, Vol. 54, No. 1. (February 2005), pp. 66-76. by Barbara Holland, Frederic Delsuc, Vincent Moulton posted to consensus mammal methods phylogenetics root tree by aprasad on 2008-02-29 04:45:59 as
	Mitochondrial Versus Nuclear Gene Sequences in Deep-Level Mammalian Phylogeny Reconstruction [My Copy] Mol Biol Evol, Vol. 18, No. 2. (1 February 2001), pp. 132-143. by Mark S. Springer, Ronald W. Debry, Christophe Douady, et al.Heather M. Amrine, Ole Madsen, Wilfried W. de Jong, Michael J. Stanhope posted to mammal phylogenetics theria tree by aprasad on 2008-02-29 04:39:10 as
	The effect of branch lengths on phylogeny: An empirical study using highly conserved orthologs from mammalian genomes [My Copy] Molecular Phylogenetics and Evolution, Vol. 45, No. 1. (October 2007), pp. 81-88. by Austin L. Hughes, Robert Friedman posted to mammal phylogenetics phylogenomics tree by aprasad on 2008-02-28 23:07:38 as
	Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant. [My Copy] Syst Biol, Vol. 48, No. 1. (March 1999), pp. 31-53. by P. J. Waddell, Y. Cao, J. Hauf, M. Hasegawa posted to mammal phylogenetics tree by aprasad on 2008-01-31 23:54:58 as
	Assessing the Cretaceous superordinal divergence times within birds and placental mammals by using whole mitochondrial protein sequences and an extended statistical framework. [My Copy] Syst Biol, Vol. 48, No. 1. (March 1999), pp. 119-137. by P. J. Waddell, Y. Cao, M. Hasegawa, D. P. Mindell posted to aa mammal mitochondria time_tree by aprasad on 2008-01-31 23:53:44 as
	Parallel adaptive radiations in two major clades of placental mammals. [My Copy] Nature, Vol. 409, No. 6820. (1 February 2001), pp. 610-614. by O. Madsen, M. Scally, C. J. Douady, et al.D. J. Kao, R. W. Debry, R. Adkins, H. M. Amrine, M. J. Stanhope, W. W. de Jong, M. S. Springer posted to mammal phylogenetics tree by aprasad on 2008-01-26 18:23:58 as
	A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods. [My Copy] Mol Biol Evol, Vol. 22, No. 2. (February 2005), pp. 251-264. by A. Gibson, Gowri V. Shankar, P. G. Higgs, M. Rattray posted to mammal mitochondria phylogenetics tree by aprasad on 2008-01-24 23:08:22 as
	PHYLOGENETICS: Enhanced: Which Mammalian Supertree to Bark Up? [My Copy] Science, Vol. 291, No. 5509. (2 March 2001), pp. 1709-1711. by Mark S. Springer, Wilfried W. de Jong posted to boreoeutheria mammal phylogenetics review tree by aprasad on 2008-01-24 16:35:17 as
	Comparative genome maps of the pangolin, hedgehog, sloth, anteater and human revealed by cross-species chromosome painting: further insight into the ancestral karyotype and genome evolution of eutherian mammals [My Copy] Chromosome Research, Vol. 14, No. 3. (April 2006), pp. 283-296. by Yang, Fengtang, Graphodatsky, et al. Alexander, Li, Tangliang, Fu, Beiyuan, Dobigny, Gauthier, Wang, Jinghuan, Perelman, Polina, Serdukova, Natalya, Su, Weiting, O'Brien, Patricia, Wang, Yingxiang, Ferguson Smith, Malcolm, Volobouev, Vitaly, Nie, Wenhui posted to cytogenetics mammal rearrangement tree by aprasad on 2008-01-18 23:34:36 as
	Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora. [My Copy] Proc Biol Sci, Vol. 271, No. 1547. (22 July 2004), pp. 1477-1484. by T. J. Robinson, B. Fu, Ferguson M. A. Smith, F. Yang posted to cytogenetics mammal rearrangement tree by aprasad on 2008-01-18 23:06:09 as
	Reflections on higher mammalian phylogenetics [My Copy] Journal of Mammalian Evolution, Vol. 1, No. 1. (1 March 1993), pp. 3-30. by Michael J. Novacek posted to mammal morphology tree by aprasad on 2008-01-10 22:32:38 as
	Molecules remodel the mammalian tree [My Copy] Trends in Ecology & Evolution, Vol. 13, No. 7. (1 July 1998), pp. 270-275. by Wilfried W. de Jong posted to mammal phylogenetics tree by aprasad on 2008-01-10 22:27:15 as
	Molecular Evidence for the Major Clades of Placental Mammals [My Copy] Journal of Mammalian Evolution, Vol. 8, No. 4. (1 December 2001), pp. 239-277. by Mark Scally, Ole Madsen, Christophe J. Douady, Wilfried W. de Jong, Michael J. Stanhope, Mark S. Springer posted to mammal phylogenetics placental tree by aprasad on 2008-01-10 22:15:54 as
	SINE Insertions in Cladistic Analyses and the Phylogenetic Affiliations of Tarsius bancanus to Other Primates [My Copy] Genetics, Vol. 157, No. 2. (1 February 2001), pp. 777-784. by Jurgen Schmitz, Martina Ohme, Hans Zischler posted to mammal primate sine transposon tree by aprasad on 2008-01-10 19:27:59 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Rooting the eutherian tree: the power and pitfalls of phylogenomics [My Copy] Genome Biology, Vol. 8 (21 September 2007), R199. by Hidenori Nishihara, Norihiro Okada, Masami Hasegawa posted to likelihood mammal phylogenetics root_eutheria tree by aprasad on 2007-09-24 15:19:21 as along with 1 person maximilianh
	Dog as an Outgroup to Human and Mouse [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e74. by Gerton Lunter posted to mammal methods phylogenetics rare_genomic_characters rodents transposon tree by aprasad on 2007-09-13 20:47:07 as along with 1 person clearbluespring
	Genomics, biogeography, and the diversification of placental mammals [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 36. (4 September 2007), pp. 14395-14400. by Derek E. Wildman, Monica Uddin, Juan C. Opazo, et al.Guozhen Liu, Vincent Lefort, Stephane Guindon, Olivier Gascuel, Lawrence I. Grossman, Roberto Romero, Morris Goodman posted to atlantogenata mammal root_eutheria tree by aprasad on 2007-09-07 15:11:07 as along with 2 people and 2 groups dchughes kluck G4ID Genetics-of-Gambling
	Phylogenomic Data Analyses Provide Evidence that Xenarthra and Afrotheria Are Sister Groups [My Copy] Mol Biol Evol, Vol. 24, No. 9. (1 September 2007), pp. 2059-2068. by Bjorn M. Hallstrom, Morgan Kullberg, Maria A. Nilsson, Axel Janke posted to atlantogenata mammal root_eutheria tree by aprasad on 2007-09-07 15:10:40 as along with 1 person dchughes
	Fixation biases affecting human SNPs [My Copy] Trends in Genetics, Vol. 20, No. 3. (March 2004), pp. 122-126. by Matthew T. Webster, Nick G. Smith posted to gc isochore mammal mutation_rate by aprasad on 2007-08-09 00:53:56 as
	Distinct Changes of Genomic Biases in Nucleotide Substitution at the Time of Mammalian Radiation [My Copy] Mol Biol Evol, Vol. 20, No. 11. (1 November 2003), pp. 1887-1896. by Peter F. Arndt, Dmitri A. Petrov, Terence Hwa posted to gc isochore mammal mutation_rate by aprasad on 2007-08-09 00:52:54 as
	Reconstructing large regions of an ancestral mammalian genome in silico [My Copy] Genome Res., Vol. 14, No. 12. (1 December 2004), pp. 2412-2423. by Mathieu Blanchette, Eric D. Green, Webb Miller, David Haussler posted to ancestral_state mammal by aprasad on 2007-08-04 21:15:36 as along with 4 people gjuggler balajis gisle Neeperando
	Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation. [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007) by Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E. E. Warburton posted to mammal repeat time transposon tree by aprasad on 2007-07-31 14:20:11 as along with 7 people and 3 groups kiara dchughes sebastien_vigneau N0131826 paulcartwright yoanjacquemin PetrovLab G4ID Genetics-of-Gambling BergmanLab
	Site specific rates of mitochondrial genomes and the phylogeny of eutheria [My Copy] BMC Evolutionary Biology, Vol. 7 (25 January 2007), 8. by Karl M. Kjer, Rodney L. Honeycutt posted to mammal mitochondria phylogenetics theria tree by aprasad on 2007-07-25 21:16:58 as
	A phylogenetic foundation for comparative mammalian genomics. [My Copy] Genome Inform, Vol. 12 (2001), pp. 141-154. by P. J. Waddell, H. Kishino, R. Ota posted to mammal phylogenetics phylogenomics tree by aprasad on 2007-07-25 21:13:07 as
	Molecular Phylogeny and Divergence Time Estimates for Major Rodent Groups: Evidence from Multiple Genes [My Copy] Mol Biol Evol, Vol. 18, No. 5. (1 May 2001), pp. 777-791. by Ronald M. Adkins, Eric L. Gelke, Diane Rowe, Rodney L. Honeycutt posted to mammal phylogenetics rodents tree by aprasad on 2007-07-20 15:34:35 as
	A web-database of mammalian morphology and a reanalysis of placental phylogeny [My Copy] BMC Evolutionary Biology, Vol. 7 (03 July 2007), 108. by Robert J. Asher posted to mammal morphology phylogenetics root_eutheria tree by aprasad on 2007-07-06 20:44:28 as
	Molecular support for Afrotheria and the polyphyly of Lipotyphla based on analyses of the growth hormone receptor gene. [My Copy] Mol Phylogenet Evol, Vol. 24, No. 1. (July 2002), pp. 91-101. by M. J. Malia, R. M. Adkins, M. W. Allard posted to eulipotyphla mammal phylogenetics tree by aprasad on 2007-06-29 14:56:51 as
	Indel evolution of mammalian introns and the utility of non-coding nuclear markers in eutherian phylogenetics [My Copy] Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 827-837. by Conrad A. Matthee, Geeta Eick, Sandi W. Munro, Claudine Montgelard, Amanda T. Pardini, Terence J. Robinson posted to genome_size indel indel_rate mammal phylogenetics tree by aprasad on 2007-06-21 20:45:23 as along with 1 person lilou
	The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and¬†Eutheria [My Copy] PNAS, Vol. 94, No. 4. (18 February 1997), pp. 1276-1281. by Axel Janke, Xiufeng Xu, Ulfur Arnason posted to mammal marsupionta phylogenetics tree by aprasad on 2007-05-31 21:57:48 as
	Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals [My Copy] PNAS, Vol. 95, No. 17. (18 August 1998), pp. 9967-9972. by Michael J. Stanhope, Victor G. Waddell, Ole Madsen, et al.Wilfried de Jong, Blair S. Hedges, Gregory C. Cleven, Diana Kao, Mark S. Springer posted to eulipotyphla mammal phylogenetics tree by aprasad on 2007-05-31 21:45:21 as
	Evolutionary History of LINE-1 in the Major Clades of Placental Mammals. [My Copy] PLoS ONE, Vol. 2 (2007) by P. D. Waters, G. Dobigny, P. J. Waddell, T. J. Robinson posted to atlantogenata mammal phylogenetics repeats tree by aprasad on 2007-05-02 14:46:52 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Using genomic data to unravel the root of the placental mammal phylogeny. [My Copy] Genome Res, Vol. 17, No. 4. (April 2007), pp. 413-421. by W. J. Murphy, T. H. Pringle, T. A. Crider, M. S. Springer, W. Miller posted to indel mammal phylogenetics phylogenomics rare_genomic_characters root_eutheria transposon tree by aprasad on 2007-05-02 14:40:43 as along with 2 people djkt maximilianh
	Housekeeping Genes for Phylogenetic Analysis of Eutherian Relationships [My Copy] Mol Biol Evol, Vol. 23, No. 8. (1 August 2006), pp. 1493-1503. by Morgan Kullberg, Maria A. Nilsson, Ulfur Arnason, Eric H. Harley, Axel Janke posted to mammal phylogenetics root_eutheria tree by aprasad on 2007-02-06 21:08:26 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data [My Copy] PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e2. by Sergey Nikolaev, Juan, Elliott H. Margulies, et al.Nisc C. Program, Jacques Rougemont, Bruno Nyffeler, Stylianos E. Antonarakis posted to encode mammal phylogenetics phylogenomics root_eutheria tree zooseq by aprasad on 2007-01-09 17:20:39 as along with 2 people Garamonfok maximilianh
	The root of the mammalian tree inferred from whole mitochondrial genomes. [My Copy] Mol Phylogenet Evol, Vol. 28, No. 2. (August 2003), pp. 171-185. by M. J. Phillips, D. Penny posted to mammal marsupionta phylogenetics root_eutheria ry_coding theria tree by aprasad on 2006-10-26 22:05:31 as

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phylogenetics	249
tree	119
evolution	109
methods	107
genome_size	88
mammal	71
review	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
comparative_genomics	44
phylogenomics	44
bat	43
selection	41
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
genomics	26
human_genome	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
mutation	18
gc	17
rare_genomic_characters	17
sequence	17
algorithm	16
retrotransposon	16
substitution_rate	16
simulation	15
platyrrhini	13
congruence_landscapes	12
element	12
model	12
conservation	11
mitochondria	11
root_eutheria	11
time	11
bacteria	10
chimp	10
homo-pan-gorilla	10
isochore	10
jc	10
mcs	10
msa	10
nisc	10
parsimony	10
bac	9
functional	9
lineage_sorting	9
morphology	9
motif	9
plants	9
tfbs	9
theria	9
encode	8
flying_dna	8
horizontal_gene_transfer	8
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phil	8
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mouse	7
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sox10	6
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fish	5
gdf6	5
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hmm	5
map	5
methylation	5
molecular_evolution	5
monotreme	5
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ortholog	5
plant	5
promoter	5
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theory	5
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yeast	5
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exon	4
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ild	4
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joint	4
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murphy	4
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placental	4
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star_paradox	4
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ucsc	4
zooseq	4
bias	3
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dinosaur	3
dog	3
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exactplus	3
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island	3
laurasiatheria	3
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line	2
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mammoth	2
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paleontology	2
paralog	2
phastcons	2
pipmaker	2
positive_selection	2
rat	2
raxml	2
reptile	2
rodent	2
saturation	2
sliding_window	2
software	2
structural_variation	2
tba	2
transfac	2
tree_comparison	2
454	1
alligator	1
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amphipod	1
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antisense	1
arabadopsis	1
archaea	1
balancing_selection	1
bed	1
biofuel	1
block_bootstrap	1
bootsrap	1
branch_length	1
cambrian	1
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cat	1
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chr22	1
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darwin	1
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enzyme	1
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evolutionary_medicine	1
faire	1
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finishing	1
fitness	1
fly	1
fossil	1
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gencode	1
gene_conversion	1
gene_deserts	1
gene_flow	1
genetic_code	1
genetic_disease	1
gene_tree	1
goldfish	1
hidden	1
histone	1
history	1
history-of-science	1
hky85	1
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horse	1
hplc	1
hubmed	1
human_microbiome	1
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inde_rate	1
jalview	1
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longevity	1
mammalian	1
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r	1
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upgma	1
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usage	1
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web	1
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whale	1
xenarthra	1

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