aprasad's phylogenomics [44 articles] Export

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	Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups [My Copy] Cladistics, Vol. 25, No. 3. (2009), pp. 211-230. by Pablo A. Goloboff, Santiago A. Catalano, J. Marcos Mirande, et al.Claudia A. Szumik, J. Salvador Arias, Mari Källersjö, James S. Farris posted to tree supertree supermatrix phylogenomics phylogenetics by aprasad on 2009-11-20 20:43:07 as
	Phylogenomics of primates and their ancestral populations [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 1929-1941. by Adam Siepel posted to review primate phylogenomics nisc by aprasad on 2009-10-15 21:36:30 as along with 4 people and 1 group sameersoi rvosa djkt merpublic FAB-lab
	Phylogenomics: evolution and genomics intersection. [My Copy] International journal of bioinformatics research and applications, Vol. 5, No. 5. (2009), pp. 548-563. by Virendra S. Gomase, Somnath Tagore posted to review phylogenomics phylogenetics by aprasad on 2009-10-15 21:34:55 as
	Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic data. [My Copy] Molecular phylogenetics and evolution, Vol. 52, No. 3. (10 September 2009), pp. 660-664. by Zhuo-Cheng C. Hou, Roberto Romero, Derek E. Wildman posted to whole_genome tree phylogenomics phylogenetics mammal laurasiatheria coding by aprasad on 2009-09-02 19:24:58 as along with 1 person and 1 group avilella Ensembl Compara citations
	OrthoSelect: a protocol for selecting orthologous groups in phylogenomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (16 July 2009), 219. by Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Worheide, Burkhard Morgenstern posted to est ortholog phylogenomics tools whole_genome by aprasad on 2009-07-20 16:36:56 as along with 7 people operon nuin Keywan GustavoLacerda zarskyv natstreet druvus
	Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Nicolas Lartillot, Henner Brinkmann, Herve Philippe posted to methods model_choice phylogenetic_accuracy phylogenetics phylogenomics by aprasad on 2009-06-17 21:23:41 as along with 1 person akifumi
	PHYLOGENOMICS [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 36, No. 1. (2005), pp. 541-562. by Hervé Philippe, Frédéric Delsuc, Henner Brinkmann, Nicolas Lartillot posted to phylogenomics review by aprasad on 2009-03-05 21:29:18 as along with 4 people skembel inquil treangen timflutre
	Is a new and general theory of molecular systematics emerging? [My Copy] Evolution; international journal of organic evolution, Vol. 63, No. 1. (January 2009), pp. 1-19. by Scott V. Edwards posted to phylogenetics phylogenomics review by aprasad on 2009-01-23 21:12:15 as along with 2 people druvus nuin
	Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations. [My Copy] BMC Evolutionary Biology, Vol. 8 (27 May 2008), 162. by Bjorn M. Hallstrom, Axel Janke posted to coding mammal phylogenetics phylogenomics tree by aprasad on 2008-09-30 01:09:32 as
	Phylogenetic inference using whole genomes. [My Copy] Annual review of genomics and human genetics, Vol. 9, No. 1. (2008), pp. 217-231. by Bruce Rannala, Ziheng Yang posted to congruence genomics methods phylogenetics phylogenomics review by aprasad on 2008-09-04 17:04:51 as along with 10 people and 1 group codonusage katholt friendpine inquil gwallau operon treangen druvus gjuggler zwang LabDros
	Phylogenetic Signal in the Eukaryotic Tree of Life [My Copy] Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123. by Michael J. Sanderson posted to phylogenetics phylogenetic_signal phylogenomics by aprasad on 2008-07-07 20:05:55 as along with 8 people and 3 groups cmzmasek caseybrown dchughes stajich gulsacan jlgreen djkt marck Mycology Green Lab iSEEM
	EVOLUTION: Building the Tree of Life, Genome by Genome [My Copy] Science, Vol. 320, No. 5884. (27 June 2008), pp. 1716-1717. by Elizabeth Pennisi posted to phylogenomics review by aprasad on 2008-06-27 23:43:07 as along with 3 people and 2 groups renatomilani gulsacan jlgreen Green Lab iSEEM
	More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. [My Copy] Molecular biology and evolution, Vol. 22, No. 5. (May 2005), pp. 1337-1344. by A. Rokas, S. B. Carroll posted to phylogenetic_accuracy phylogenetics phylogenomics taxon_sampling by aprasad on 2008-06-19 21:49:06 as along with 1 person druvus
	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? [My Copy] BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95. by Stefanie Hartmann, Todd J. Vision posted to alignment est indel phylogenetics phylogenomics by aprasad on 2008-05-09 17:56:28 as along with 7 people and 2 groups sriesenfeld skembel treangen natstreet druvus stajich Patola iSEEM Mycology
	Confirming the phylogeny of mammals by use of large comparative sequence data sets. [My Copy] Molecular biology and evolution, Vol. 25, No. 9. (2 May 2008), pp. 1795-1808. by Arjun B. Prasad, Marc W. Allard, Eric D. Green posted to atlantogenata mammal nisc phylogenetics phylogenomics placental tree by aprasad on 2008-05-07 13:34:54 as along with 4 people hdopazo gjuggler dchughes Stew
	Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 504-514. by L. Liu, D. K. Pearl posted to bayesian congruence consensus phylogenetics phylogenomics by aprasad on 2008-03-24 14:48:00 as along with 3 people lizbiogen druvus akifumi
	From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case. [My Copy] Syst Biol, Vol. 56, No. 1. (February 2007), pp. 1-16. by I. Comas, A. Moya, González F. Candelas posted to bacteria congruence phylogenetics phylogenomics by aprasad on 2008-03-21 15:24:52 as along with 1 person operon
	The effect of branch lengths on phylogeny: An empirical study using highly conserved orthologs from mammalian genomes [My Copy] Molecular Phylogenetics and Evolution, Vol. 45, No. 1. (October 2007), pp. 81-88. by Austin L. Hughes, Robert Friedman posted to mammal phylogenetics phylogenomics tree by aprasad on 2008-02-28 23:07:38 as
	Molecular and Genomic Data Identify the Closest Living Relative of Primates [My Copy] Science, Vol. 318, No. 5851. (2 November 2007), pp. 792-794. by Jan E. Janecka, Webb Miller, Thomas H. Pringle, et al.Frank Wiens, Annette Zitzmann, Kristofer M. Helgen, Mark S. Springer, William J. Murphy posted to phylogenetics phylogenomics primate tree by aprasad on 2007-11-09 21:43:44 as along with 4 people dchughes djkt zwang hpaces
	Detecting and overcoming systematic errors in genome-scale phylogenies. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399. by Rodríguez N. Ezpeleta, H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, H. Philippe posted to methods non-phylogenetic_signal phylogenetics phylogenomics by aprasad on 2007-09-27 21:07:39 as along with 3 people and 2 groups rvosa stajich dandaman FAB-lab Mycology
	Phylogenomics of species from four genera of New World monkeys by flow sorting and reciprocal chromosome painting. [My Copy] BMC Evol Biol, Vol. 7 Suppl 2 (2007) by F. Dumas, R. Stanyon, L. Sineo, G. Stone, F. Bigoni posted to karyotype phylogenetics phylogenomics primate tree by aprasad on 2007-09-17 14:05:47 as
	The human phylome [My Copy] Genome Biology, Vol. 8 (13 June 2007), R109. by Jaime H. Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón posted to coding phylogenetics phylogenomics by aprasad on 2007-07-31 14:39:43 as along with 5 people and 1 group kshameer dpollard grahamc cjeans sgoetz EisenLab
	A phylogenetic foundation for comparative mammalian genomics. [My Copy] Genome Inform, Vol. 12 (2001), pp. 141-154. by P. J. Waddell, H. Kishino, R. Ota posted to mammal phylogenetics phylogenomics tree by aprasad on 2007-07-25 21:13:07 as
	Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis. [My Copy] Nucleic Acids Res (8 May 2007) by Jake, Dan Kirshner, Nandini Krishnamurthy, Kimmen Sjölander posted to alignment phylogenetics phylogenomics tools by aprasad on 2007-05-14 01:43:21 as
	Using genomic data to unravel the root of the placental mammal phylogeny. [My Copy] Genome Res, Vol. 17, No. 4. (April 2007), pp. 413-421. by W. J. Murphy, T. H. Pringle, T. A. Crider, M. S. Springer, W. Miller posted to indel mammal phylogenetics phylogenomics rare_genomic_characters root_eutheria transposon tree by aprasad on 2007-05-02 14:40:43 as along with 2 people djkt maximilianh
	High-resolution species trees without concatenation [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 14. (3 April 2007), pp. 5936-5941. by Scott V. Edwards, Liang Liu, Dennis K. Pearl posted to bayesian congruence phylogenetics phylogenomics by aprasad on 2007-04-17 22:42:30 as along with 8 people and 1 group lizbiogen robfsouza treangen druvus alexeid stevanspringer operon zwang FAB-lab
	Overview of the First Phylogenomics Conference [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Herve Philippe, Mathieu Blanchette posted to phylogenomics review conference by aprasad on 2007-03-19 15:15:04 as
	Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome. [My Copy] Proc Natl Acad Sci U S A (16 February 2007) by Andrew M. M. Shedlock, Christopher W. W. Botka, Shaying Zhao, et al.Jyoti Shetty, Tingting Zhang, Jun S. S. Liu, Patrick J. J. Deschavanne, Scott V. V. Edwards posted to genome_evolution genomics intrinsic_features phylogenomics reptile repeats by aprasad on 2007-02-27 20:40:36 as
	Genome-scale phylogeny and the detection of systematic biases. [My Copy] Mol Biol Evol, Vol. 21, No. 7. (July 2004), pp. 1455-1458. by M. J. Phillips, F. Delsuc, D. Penny posted to error gc methods phylogenetics phylogenomics ry_coding by aprasad on 2007-02-13 17:08:55 as
	SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Beatrice Roure, Naiara R. Ezpeleta, Herve Philippe posted to alignment ortholog phylogenetics phylogenomics tools by aprasad on 2007-02-12 19:30:28 as along with 7 people calderonv treangen natstreet druvus operon akifumi dmp
	Assessment of phylogenomic and orthology approaches for phylogenetic inference. [My Copy] Bioinformatics (19 January 2007) by B. E. E. Dutilh, V. van Noort, van der Heijden, T. Boekhout, B. Snel, M. A. A. Huynen posted to whole_genome phylogenomics phylogenetics ortholog alignment by aprasad on 2007-01-29 14:41:46 as along with 1 person inquil
	Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data [My Copy] PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e2. by Sergey Nikolaev, Juan, Elliott H. Margulies, et al.Nisc C. Program, Jacques Rougemont, Bruno Nyffeler, Stylianos E. Antonarakis posted to encode mammal phylogenetics phylogenomics root_eutheria tree zooseq by aprasad on 2007-01-09 17:20:39 as along with 2 people Garamonfok maximilianh
	Insertion Events of CR1 Retrotransposable Elements Elucidate the Phylogenetic Branching Order in Galliform Birds [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 338-347. by Vera B. Kaiser, Marcel van Tuinen, Hans Ellegren posted to tree rare_genomic_characters phylogenomics phylogenetics microinversions by aprasad on 2007-01-08 14:51:00 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Microinversions in mammalian evolution [My Copy] PNAS, Vol. 103, No. 52. (26 December 2006), pp. 19824-19829. by M. J. Chaisson, B. J. Raphael, P. A. Pevzner posted to zooseq tree rare_genomic_characters phylogenomics phylogenetics microinversions by aprasad on 2007-01-08 14:49:39 as along with 2 people APRegier AaronDarling
	Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions [My Copy] PNAS, Vol. 103, No. 26. (27 June 2006), pp. 9929-9934. by Hidenori Nishihara, Masami Hasegawa, Norihiro Okada posted to laurasiatheria mammal phylogenomics rare_genomic_characters transposon tree by aprasad on 2006-08-17 22:51:05 as along with 2 people and 1 group cmm maximilianh FAB-lab
	Orthologous repeats and mammalian phylogenetic inference. [My Copy] Genome Res, Vol. 15, No. 7. (July 2005), pp. 998-1006. by A. Bashir, C. Ye, A. L. Price, V. Bafna posted to mammal phylogenetics phylogenomics repeats tree by aprasad on 2006-03-31 22:18:40 as along with 1 person bpb
	Mammalian phylogenomics comes of age. [My Copy] Trends Genet, Vol. 20, No. 12. (December 2004), pp. 631-639. by W. J. Murphy, P. A. Pevzner, S. J. O'Brien posted to mammal murphy phylogenomics review tree by aprasad on 2006-03-24 18:00:54 as along with 1 person balajis
	Phylogenomics: the beginning of incongruence? [My Copy] Trends in Genetics, Vol. 22, No. 4. (18 February 2006), pp. 225-231. by Olivier Jeffroy, Henner Brinkmann, Frédéric Delsuc, Hervé Philippe posted to phylogenomics congruence phylogenetics by aprasad on 2006-03-07 15:52:06 as along with 5 people and 4 groups calderonv indigoviolet dchughes taka kinestetika EisenLab G4ID microbiology_nijmegen Genetics-of-Gambling
	Legume comparative genomics: progress in phylogenetics and phylogenomics. [My Copy] Curr Opin Plant Biol (7 February 2006) by Quentin Cronk, Isidro Ojeda, Toby posted to phylogenomics by aprasad on 2006-02-23 21:19:59 as
	Genome-scale approaches to resolving incongruence in molecular phylogenies [My Copy] Nature, Vol. 425, No. 6960. (23 October 2003), pp. 798-804. by A. Rokas, B. L. Williams, N. King, S. B. Carroll posted to congruence missing_data phylogenetics phylogenomics by aprasad on 2005-10-26 23:33:31 as along with 7 people and 1 group skembel biomcgary nlapalu druvus knaseanka AaronDarling srfairclough iSEEM
	Functional genome annotation through phylogenomic mapping [My Copy] Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698. by Balaji S. Srinivasan, Nora B. Caberoy, Garret Suen, et al.Rion G. Taylor, Radhika Shah, Farah Tengra, Barry S. Goldman, Anthony G. Garza, Roy D. Welch posted to bacteria functional genomics horizontal_gene_transfer phylogenomics by aprasad on 2005-09-23 18:12:53 as along with 11 people and 1 group operon setar tmmurali pggm balajis nuke2005 lyongu nedwards shoshin blobbybirdman kroos Myxo group
	GENOME TREES AND THE NATURE OF GENOME EVOLUTION [My Copy] Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 191-209. by B. Snel, B. E. Dutilh posted to evolution genome_evolution horizontal_gene_transfer phylogenomics supertree by aprasad on 2005-09-14 16:11:37 as along with 6 people dutilh pablocarb inquil ssgong knaseanka dayjm
	Genome phylogeny based on short-range correlations in DNA sequences. [My Copy] J Comput Biol, Vol. 12, No. 5. (June 2005), pp. 545-553. by M. Dehnert, R. Plaumann, W. E. Helm, M. T. Hütt posted to genome_evolution phylogenomics signature by aprasad on 2005-08-29 15:51:31 as
	Phylogenomics of eukaryotes: impact of missing data on large alignments. [My Copy] Mol Biol Evol, Vol. 21, No. 9. (September 2004), pp. 1740-1752. by H. Philippe, E. A. Snell, E. Bapteste, P. Lopez, P. W. Holland, D. Casane posted to missing_data phylogenetics phylogenomics by aprasad on 2005-08-08 22:23:52 as along with 1 person and 1 group jdelcampo Microbial-Ecology

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phylogenetics	249
tree	119
evolution	109
methods	107
genome_size	88
review	71
mammal	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
comparative_genomics	44
phylogenomics	44
bat	43
selection	41
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
human_genome	26
genomics	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
mutation	18
gc	17
sequence	17
rare_genomic_characters	17
retrotransposon	16
algorithm	16
substitution_rate	16
simulation	15
platyrrhini	13
element	12
model	12
congruence_landscapes	12
mitochondria	11
root_eutheria	11
time	11
conservation	11
mcs	10
nisc	10
jc	10
homo-pan-gorilla	10
chimp	10
msa	10
bacteria	10
isochore	10
parsimony	10
lineage_sorting	9
morphology	9
functional	9
plants	9
motif	9
tfbs	9
bac	9
theria	9
encode	8
recombination	8
long_branch_attraction	8
speciation	8
non-coding	8
flying_dna	8
horizontal_gene_transfer	8
phil	8
mouse	7
tree_visualization	7
signature	6
repeat	6
model_choice	6
phylogenetic_accuracy	6
nucleotypic_effect	6
time_tree	6
indel_rate	6
molecular_clock	6
sox10	6
consensus	6
coalescent	6
book	6
drosophila	6
rodents	6
missing_data	6
monotreme	5
cpg	5
gdf6	5
variation	5
cytogenetics	5
bird	5
fish	5
ultraconserved	5
gene_geneology	5
colorectal_cancer	5
enhancer	5
chicken	5
theory	5
glires	5
molecular_evolution	5
hmm	5
map	5
ortholog	5
plant	5
ncrna	5
binfo	5
rearrangement	5
methylation	5
yeast	5
promoter	5
protein	4
ild	4
bac_mapping	4
neutral	4
model_selection	4
placental	4
star_paradox	4
exon	4
murphy	4
correlations	4
chromatin	4
joint	4
zooseq	4
ucsc	4
ry_coding	4
genomic	4
analysis	4
atlantogenata	4
karyotype	4
splicing	4
afrotheria	4
intrinsic_features	4
alignment_error	4
supertree	4
overgo	4
signal	4
chip	4
genome_paper	4
simultaneous_inference	3
exactplus	3
mrbayes	3
sequencing	3
root	3
synteny	3
laurasiatheria	3
partitioning	3
skin	3
dinosaur	3
development	3
centromere	3
bootstrap	3
microinversions	3
cetartiodactyla	3
island	3
bioinformatics	3
dog	3
marsupionta	3
epigenetics	3
functional_genomics	3
bias	3
phylogenetic_signal	3
homoplasy	3
support	3
sine	3
saturation	2
est	2
lrt	2
pipmaker	2
hox	2
carnivore	2
duplication	2
boreoeutheria	2
genetic_distance	2
outgroup	2
database	2
experimental	2
browser	2
transfac	2
alu	2
structural_variation	2
intraspecifc_variation	2
comment	2
rodent	2
ecology	2
error	2
raxml	2
sliding_window	2
microsatellite	2
microrna	2
dnasei	2
career	2
phastcons	2
epigraph	2
software	2
medical_genetics	2
eulipotyphla	2
nags	2
genome_assembly	2
line	2
hybridization	2
aa	2
insertion_site_bias	2
breakpoints	2
codon	2
rat	2
mexico	2
tba	2
cichlid	2
base_composition	2
reptile	2
coalhmm	2
expression	2
positive_selection	2
tree_comparison	2
human_evolution	2
fpc	2
paralog	2
paleontology	2
mammoth	2
non-phylogenetic_signal	2
assembly	2
systematic	1
computational_model	1
genetic_disease	1
hplc	1
biofuel	1
fossil	1
replication	1
perissodactylas	1
dcodeorg	1
gencode	1
archaea	1
systematic_bias	1
disease	1
cow	1
cambrian	1
textbook	1
tree_shrew	1
mammalian	1
goldfish	1
454	1
enzyme	1
clinseq	1
overdispersion	1
recon	1
metagenomics	1
hidden	1
seq-gen	1
conference	1
mom	1
medicine	1
method	1
feulgen	1
targeted_sequencing	1
inde_rate	1
finishing	1
tag	1
drug_resistance	1
c_elegans	1
thomas	1
faire	1
platypus	1
tandem_duplications	1
nature	1
spacing	1
search	1
amphibian	1
histone	1
linkage	1
kinship	1
nj	1
chordate	1
mcclintock	1
consel	1
human_microbiome	1
imprinting	1
gene_conversion	1
galaxy	1
sampling	1
gblocks	1
transcription	1
regulation	1
alligator	1
block_bootstrap	1
demography	1
visualization	1
social_class	1
phyml	1
soop	1
structure	1
evolutionary_medicine	1
history	1
branch_length	1
wgs	1
pseudogene	1
ancient_dna	1
bed	1
xenarthra	1
tuatara	1
mulliken	1
neandertal	1
orangutan	1
deletion	1
hky85	1
nylon	1
design	1
gene_deserts	1
tandem_repeats	1
genetic_code	1
antisense	1
horse	1
lactase	1
supermatrix	1
dna_loss	1
amphipod	1
whale	1
honeybee	1
cat	1
coyote	1
tetraodon	1
chr22	1
metazoa	1
dna	1
pubmed	1
silkworm	1
nomenclature	1
densitometry	1
longevity	1
trophoblast	1
bootsrap	1
single_gene	1
mixture_models	1
fitness	1
upgma	1
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balancing_selection	1
primer	1
hubmed	1
web	1
strand	1
cnv	1
taxon_sampling	1
trees	1
me	1
nextgen_seq	1
gaps	1
arabadopsis	1
lemur	1
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chip-seq	1
numts	1
modeltest	1
frog	1
gene_flow	1
illumina	1
jalview	1
r	1
chromosome	1
ancestral_state	1
gene_tree	1
usage	1
molecular_biology	1
melan-a	1
canalization	1
pig	1
muntjak	1
uprobe	1
history-of-science	1
shark	1
fugu	1
chip-chip	1
fly	1
darwin	1
euarchontoglires	1
opossum	1
physical	1

aprasad's phylogenomics [44 articles] Export

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