aprasad's tree [119 articles] Export

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	Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups [My Copy] Cladistics, Vol. 25, No. 3. (2009), pp. 211-230. by Pablo A. Goloboff, Santiago A. Catalano, J. Marcos Mirande, et al.Claudia A. Szumik, J. Salvador Arias, Mari Källersjö, James S. Farris posted to tree supertree supermatrix phylogenomics phylogenetics by aprasad on 2009-11-20 20:43:07 as
	Networks, Trees, and Treeshrews: Assessing Support and Identifying Conflict with Multiple Loci and a Problematic Root [My Copy] Syst Biol (16 June 2009), syp025. by Trina E. Roberts, Eric J. Sargis, Link E. Olson posted to tree_shrew tree primate phylogenetics model_choice by aprasad on 2009-09-21 22:22:12 as
	Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic data. [My Copy] Molecular phylogenetics and evolution, Vol. 52, No. 3. (10 September 2009), pp. 660-664. by Zhuo-Cheng C. Hou, Roberto Romero, Derek E. Wildman posted to whole_genome tree phylogenomics phylogenetics mammal laurasiatheria coding by aprasad on 2009-09-02 19:24:58 as along with 1 person and 1 group avilella Ensembl Compara citations
	A fully resolved genus level phylogeny of neotropical primates (Platyrrhini). [My Copy] Molecular phylogenetics and evolution (23 July 2009) by Derek E. Wildman, Natalie M. Jameson, Juan C. Opazo, Soojin V. Yi posted to phylogenetics platyrrhini primate tree by aprasad on 2009-07-30 14:41:40 as
	Mosaic retroposon insertion patterns in placental mammals. [My Copy] Genome research, Vol. 19, No. 5. (4 May 2009), pp. 868-875. by G. Churakov, J. O. Kriegs, R. Baertsch, A. Zemann, J. Brosius, J. Schmitz posted to mammal phylogenetics placental rare_genomic_characters transposon tree by aprasad on 2009-06-17 22:02:47 as along with 1 person provero
	Construction of phylogenetic trees: A method based on mutation distances as estimated from cytochrome c seqeunces is of general applicability [My Copy] Science, Vol. 155, No. 3760. (1967), pp. 279-284. by W. M. Fitch, E. Margoliash posted to branch_length methods phylogenetics tree by aprasad on 2009-06-09 23:59:57 as
	The neighbor-joining method: a new method for reconstructing phylogenetic trees. [My Copy] Molecular biology and evolution, Vol. 4, No. 4. (1 July 1987), pp. 406-425. by N. Saitou, M. Nei posted to methods nj tree by aprasad on 2009-06-09 16:15:21 as along with 17 people and 1 group vtraag qiang parnell esyoun forest2087 mount_misery cawelsh9 cen4ik sandra_yu greger_halltorp taka gelack BioNica usagi-kirin ArtemPankin bandrewfox Auger Dead 60's
	The Number of Evolutionary Trees [My Copy] Systematic Zoology, Vol. 27, No. 1. (March 1978), 27. by Joseph Felsenstein posted to algorithm phylogenetics tree by aprasad on 2009-06-08 00:12:26 as
	Evolutionary inferences on the diversity of the genus Aotus (Platyrrhini, Cebidae) from mitochondrial cytochrome c oxidase subunit II gene sequences [My Copy] Molecular Phylogenetics and Evolution, Vol. 51, No. 2. (May 2009), pp. 382-387. by Helio L. Plautz, Evonnildo C. Gonçalves, Stephen F. Ferrari, Maria P. Schneider, Artur Silva posted to phylogenetics tree platyrrhini by aprasad on 2009-05-27 23:23:44 as
	Support Patterns from Different Outgroups Provide a Strong Phylogenetic Signal [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1259-1272. by Adrian Schneider, Gina M. Cannarozzi posted to mammal methods outgroup phylogenetics tree by aprasad on 2009-05-18 23:29:04 as
	Phylogenomics Revives Traditional Views on Deep Animal Relationships [My Copy] Current Biology, Vol. 19, No. 8. (28 April 2009), pp. 706-712. by Hervé Philippe, Romain Derelle, Philippe Lopez, et al.Kerstin Pick, Carole Borchiellini, Nicole Boury-Esnault, Jean Vacelet, Emmanuelle Renard, Evelyn Houliston, Eric Quéinnec posted to metazoa phylogenetics tree by aprasad on 2009-04-13 16:02:34 as along with 1 person cmzmasek
	Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 13. (31 March 2009), pp. 5235-5240. by H. Nishihara, S. Maruyama, N. Okada posted to boreoeutheria mammal phylogenetics rare_genomic_characters transposon tree by aprasad on 2009-04-13 15:58:10 as
	Retropositional events consolidate the branching order among New World monkey genera. [My Copy] Molecular phylogenetics and evolution, Vol. 50, No. 3. (March 2009), pp. 507-513. by M. Osterholz, L. Walter, C. Roos posted to jc phylogenetics platyrrhini rare_genomic_characters transposon tree by aprasad on 2009-03-11 22:11:01 as
	Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics [My Copy] Journal of Mammalian Evolution, Vol. 4, No. 2. (1 June 1997), pp. 77-86. by Jack Sullivan, David L. Swofford posted to phylogenetics rodent tree by aprasad on 2009-03-05 22:56:32 as
	Marsupials and Eutherians reunited: genetic evidence for the Theria hypothesis of mammalian evolution [My Copy] Mammalian Genome, Vol. 12, No. 7. (21 July 2001), pp. 513-517. by Keith J. Killian, Thomas R. Buckley, Niall Stewart, Barry L. Munday, Randy L. Jirtle posted to mammal phylogenetics theria tree by aprasad on 2009-03-05 20:36:18 as
	Molecular evidence from retroposons that whales form a clade within even-toed ungulates. [My Copy] Nature, Vol. 388, No. 6643. (14 August 1997), pp. 666-670. by M. Shimamura, H. Yasue, K. Ohshima, et al.H. Abe, H. Kato, T. Kishiro, M. Goto, I. Munechika, N. Okada posted to cetartiodactyla mammal phylogenetics tree by aprasad on 2009-03-05 14:51:05 as
	Phylogenetic analysis of the promoter region of the CD40L gene in primates and other mammals [My Copy] Infection, Genetics and Evolution, Vol. 8, No. 4. (July 2008), pp. 406-413. by M. Steiper, S. Parikh, J. Zichello posted to non-coding phylogenetics primate tree by aprasad on 2008-11-11 22:10:05 as
	Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations. [My Copy] BMC Evolutionary Biology, Vol. 8 (27 May 2008), 162. by Bjorn M. Hallstrom, Axel Janke posted to coding mammal phylogenetics phylogenomics tree by aprasad on 2008-09-30 01:09:32 as
	Impact of increased character sampling on the phylogeny of Cetartiodactyla (Mammalia): combined analysis including fossils [My Copy] Cladistics, Vol. 24, No. 4. (2008), pp. 397-442. by Maureen A. O'Leary, John Gatesy posted to cetartiodactyla mammal morphology tree by aprasad on 2008-09-12 22:52:28 as
	Mitogenomic relationships of placental mammals and molecular estimates of their divergences. [My Copy] Gene, Vol. 421, No. 1-2. (15 September 2008), pp. 37-51. by U. Arnason, J. A. Adegoke, A. Gullberg, E. H. Harley, A. Janke, M. Kullberg posted to mammal mitochondria time_tree tree by aprasad on 2008-08-13 20:43:43 as
	Morphology and Placental Mammal Phylogeny [My Copy] Systematic Biology, Vol. 57, No. 3. (2008), pp. 499-503. by Mark S. Springer, Robert W. Meredith, Eduardo Eizirik, Emma Teeling, William J. Murphy posted to mammal morphology phylogenetics tree by aprasad on 2008-06-24 21:17:43 as
	A mobile element based phylogeny of Old World monkeys [My Copy] Molecular Phylogenetics and Evolution, Vol. 37, No. 3. (December 2005), pp. 872-880. by Jinchuan Xing, Hui Wang, Kyudong Han, et al.David A. Ray, Cheney H. Huang, Leona G. Chemnick, Caro B. Stewart, Todd R. Disotell, Oliver A. Ryder, Mark A. Batzer posted to catarrhini phylogenetics rare_genomic_characters tree by aprasad on 2008-06-19 22:19:37 as
	Moving primate genomics beyond the chimpanzee genome [My Copy] Trends in Genetics, Vol. 21, No. 9. (September 2005), pp. 511-517. by Morris Goodman, Lawrence I. Grossman, Derek E. Wildman posted to primate review tree by aprasad on 2008-06-19 22:16:40 as
	Confirming the phylogeny of mammals by use of large comparative sequence data sets. [My Copy] Molecular biology and evolution, Vol. 25, No. 9. (2 May 2008), pp. 1795-1808. by Arjun B. Prasad, Marc W. Allard, Eric D. Green posted to atlantogenata mammal nisc phylogenetics phylogenomics placental tree by aprasad on 2008-05-07 13:34:54 as along with 4 people hdopazo gjuggler dchughes Stew
	Analysis of chimpanzee history based on genome sequence alignments. [My Copy] PLoS genetics, Vol. 4, No. 4. (April 2008) by J. L. Caswell, S. Mallick, D. J. Richter, et al.J. Neubauer, C. Schirmer, S. Gnerre, D. Reich posted to alignment chimp human lineage_sorting tree by aprasad on 2008-04-25 20:24:29 as along with 2 people madreach reyez
	Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the partial S6K1 gene sequences and implication of indel sites in intron 1. [My Copy] Sci China C Life Sci, Vol. 50, No. 6. (December 2007), pp. 780-788. by X. Kong, X. Wang, X. Gan, J. Li, S. He posted to fish indel phylogenetics tree by aprasad on 2008-03-23 16:07:45 as
	Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods [My Copy] Systematic Biology, Vol. 54, No. 1. (February 2005), pp. 66-76. by Barbara Holland, Frederic Delsuc, Vincent Moulton posted to consensus mammal methods phylogenetics root tree by aprasad on 2008-02-29 04:45:59 as
	Mitochondrial Versus Nuclear Gene Sequences in Deep-Level Mammalian Phylogeny Reconstruction [My Copy] Mol Biol Evol, Vol. 18, No. 2. (1 February 2001), pp. 132-143. by Mark S. Springer, Ronald W. Debry, Christophe Douady, et al.Heather M. Amrine, Ole Madsen, Wilfried W. de Jong, Michael J. Stanhope posted to mammal phylogenetics theria tree by aprasad on 2008-02-29 04:39:10 as
	The effect of branch lengths on phylogeny: An empirical study using highly conserved orthologs from mammalian genomes [My Copy] Molecular Phylogenetics and Evolution, Vol. 45, No. 1. (October 2007), pp. 81-88. by Austin L. Hughes, Robert Friedman posted to mammal phylogenetics phylogenomics tree by aprasad on 2008-02-28 23:07:38 as
	Dating nodes on molecular phylogenies: a critique of molecular biogeography [My Copy] Cladistics, Vol. 21, No. 1. (2005), pp. 62-78. by Michael Heads posted to methods review time tree by aprasad on 2008-02-28 21:36:37 as
	Rocks and clocks: calibrating the Tree of Life using fossils and molecules [My Copy] Trends in Ecology & Evolution, Vol. 22, No. 8. (August 2007), pp. 424-431. by Philip C. Donoghue, Michael J. Benton posted to methods phylogenetics review time tree by aprasad on 2008-02-28 20:06:10 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	The current status of the New World monkey phylogeny [My Copy] Anais Da Academia Brasileira De Ciencias, Vol. 72, No. 2. (June 2000), pp. 165-172. by H. Schneider posted to platyrrhini primate tree by aprasad on 2008-02-26 19:45:50 as
	Update on the Phylogenetic Systematics of New World Monkeys: Further DNA Evidence for Placing the Pygmy Marmoset (Cebuella) within the Genus Callithrix [My Copy] International Journal of Primatology, Vol. 18, No. 4. (1997), pp. 651-674. by C. M. L. Barroso, H. Schneider, M. P. C. Schneider, et al.I. Sampaio, M. L. Harada, J. Czelusniak, M. Goodman posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 23:15:32 as
	New World monkey phylogeny based on X-linked G6PD DNA sequences [My Copy] Molecular Phylogenetics and Evolution, Vol. 27, No. 1. (April 2003), pp. 121-130. by Michael E. Steiper, Maryellen Ruvolo posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:37:56 as
	Molecular Phylogeny of New World Primates (Platyrrhini) Based on [beta]2-Microglobulin DNA Sequences [My Copy] Molecular Phylogenetics and Evolution, Vol. 12, No. 1. (June 1999), pp. 74-82. by Flavio C. Canavez, Miguel A. Moreira, John J. Ladasky, Alcides Pissinatti, Peter Parham, Hector N. Seuanez posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:25:20 as
	Can molecular data place each neotropical monkey in its own branch? [My Copy] Chromosoma, Vol. 109, No. 8. (23 February 2001), pp. 515-523. by Horácio Schneider, Flávio C. Canavez, Iracilda Sampaio, Miguel Moreira, Claudia H. Tagliaro, Héctor N. Seuánez posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:18:54 as
	Molecular cladistic markers in New World monkey phylogeny (Platyrrhini, Primates) [My Copy] Molecular Phylogenetics and Evolution, Vol. 26, No. 3. (March 2003), pp. 490-501. by Silke S. Singer, Jurgen Schmitz, Claudia Schwiegk, Hans Zischler posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:15:23 as
	Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates) [My Copy] Molecular Phylogenetics and Evolution, Vol. 40, No. 1. (July 2006), pp. 274-280. by Juan C. Opazo, Derek E. Wildman, Tom Prychitko, Robert M. Johnson, Morris Goodman posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:05:16 as
	Tracking genome organization in rodents by Zoo-FISH. [My Copy] Chromosome Res (11 February 2008) by Alexander S. Graphodatsky, Fengtang Yang, Gauthier Dobigny, et al.Svetlana A. Romanenko, Larisa S. Biltueva, Polina L. Perelman, Violetta R. Beklemisheva, Elena Z. Alkalaeva, Natalya A. Serdukova, Malcolm, William J. Murphy, Terence J. Robinson posted to cytogenetics phylogenetics rodent tree by aprasad on 2008-02-14 16:33:23 as along with 1 person roodubh
	Primate Phylogeny: Morphological vs Molecular Results [My Copy] Molecular Phylogenetics and Evolution, Vol. 5, No. 1. (February 1996), pp. 102-154. by Jeheskel Shoshani, Colin P. Groves, Elwyn L. Simons, Gregg F. Gunnell posted to phylogenetics primate tree by aprasad on 2008-02-11 21:25:11 as
	Tracking Alu evolution in New World primates [My Copy] BMC Evolutionary Biology, Vol. 5, No. 1. (2005) by David Ray, Mark Batzer posted to phylogenetics platyrrhini primate sine tree by aprasad on 2008-02-10 18:02:58 as
	Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant. [My Copy] Syst Biol, Vol. 48, No. 1. (March 1999), pp. 31-53. by P. J. Waddell, Y. Cao, J. Hauf, M. Hasegawa posted to mammal phylogenetics tree by aprasad on 2008-01-31 23:54:58 as
	Parallel adaptive radiations in two major clades of placental mammals. [My Copy] Nature, Vol. 409, No. 6820. (1 February 2001), pp. 610-614. by O. Madsen, M. Scally, C. J. Douady, et al.D. J. Kao, R. W. Debry, R. Adkins, H. M. Amrine, M. J. Stanhope, W. W. de Jong, M. S. Springer posted to mammal phylogenetics tree by aprasad on 2008-01-26 18:23:58 as
	A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods. [My Copy] Mol Biol Evol, Vol. 22, No. 2. (February 2005), pp. 251-264. by A. Gibson, Gowri V. Shankar, P. G. Higgs, M. Rattray posted to mammal mitochondria phylogenetics tree by aprasad on 2008-01-24 23:08:22 as
	Paleontological Evidence to Date the Tree of Life [My Copy] Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 26-53. by Michael J. Benton, Philip C. Donoghue posted to paleontology time tree by aprasad on 2008-01-24 17:35:36 as along with 5 people Archaeogenetics akifumi maximilianh smbe2008 dandaman
	PHYLOGENETICS: Enhanced: Which Mammalian Supertree to Bark Up? [My Copy] Science, Vol. 291, No. 5509. (2 March 2001), pp. 1709-1711. by Mark S. Springer, Wilfried W. de Jong posted to boreoeutheria mammal phylogenetics review tree by aprasad on 2008-01-24 16:35:17 as
	Comparative genome maps of the pangolin, hedgehog, sloth, anteater and human revealed by cross-species chromosome painting: further insight into the ancestral karyotype and genome evolution of eutherian mammals [My Copy] Chromosome Research, Vol. 14, No. 3. (April 2006), pp. 283-296. by Yang, Fengtang, Graphodatsky, et al. Alexander, Li, Tangliang, Fu, Beiyuan, Dobigny, Gauthier, Wang, Jinghuan, Perelman, Polina, Serdukova, Natalya, Su, Weiting, O'Brien, Patricia, Wang, Yingxiang, Ferguson Smith, Malcolm, Volobouev, Vitaly, Nie, Wenhui posted to cytogenetics mammal rearrangement tree by aprasad on 2008-01-18 23:34:36 as
	Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora. [My Copy] Proc Biol Sci, Vol. 271, No. 1547. (22 July 2004), pp. 1477-1484. by T. J. Robinson, B. Fu, Ferguson M. A. Smith, F. Yang posted to cytogenetics mammal rearrangement tree by aprasad on 2008-01-18 23:06:09 as
	RadCon: phylogenetic tree comparison and consensus [My Copy] Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 486-487. by Joseph L. Thorley, Roderic D. Page posted to consensus phylogenetics tools tree by aprasad on 2008-01-16 20:37:13 as along with 2 people tny sterovetta
	Reflections on higher mammalian phylogenetics [My Copy] Journal of Mammalian Evolution, Vol. 1, No. 1. (1 March 1993), pp. 3-30. by Michael J. Novacek posted to mammal morphology tree by aprasad on 2008-01-10 22:32:38 as

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phylogenetics	249
tree	119
evolution	109
methods	107
genome_size	88
mammal	71
review	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
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bat	43
selection	41
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genome	37
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bayesian	33
whole_genome	32
cns	31
transposon	29
genomics	26
human_genome	26
primate	25
likelihood	24
coding	22
population_genetics	21
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sequence	17
algorithm	16
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platyrrhini	13
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element	12
model	12
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mitochondria	11
root_eutheria	11
time	11
bacteria	10
chimp	10
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isochore	10
jc	10
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ild	4
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rat	2
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software	2
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history	1
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r	1
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upgma	1
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web	1
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whale	1
xenarthra	1

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