aprasad's watchlist [more than 800 articles] Export

Recent papers matching aprasad's watchlist criteria

	Inferring the distribution of mutational effects on fitness in Drosophila [My Copy] Biology Letters, Vol. 2, No. 3. (22 September 2006), pp. 426-430. by Laurence Loewe, Brian Charlesworth posted to mutsel by gjuggler on 2009-11-27 16:18:54 as along with 2 people and 1 group operon dpollard EisenLab
	Correlates of substitution rate variation in mammalian protein-coding sequences. [My Copy] BMC evolutionary biology, Vol. 8 (19 February 2008), 53. by John J. Welch, Olaf R. Bininda-Emonds, Lindell Bromham posted to mutsel by gjuggler on 2009-11-27 16:15:26 as along with 1 person and 1 group rvosa FAB-lab
	Effective population size and the rate and pattern of nucleotide substitutions [My Copy] Biology Letters, Vol. 5, No. 3. (23 June 2009), pp. 417-420. by Megan Woolfit posted to mutsel by gjuggler on 2009-11-27 16:09:21 as along with 1 person operon
	Measuring the Rates of Spontaneous Mutation From Deep and Large-Scale Polymorphism Data [My Copy] Genetics, Vol. 182, No. 4. (1 August 2009), pp. 1219-1232. by Philipp W. Messer posted to mutsel by gjuggler on 2009-11-27 16:07:16 as along with 3 people and 1 group operon djkt qayub Journal picks
	Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 33. (14 August 2007), pp. 13390-13395. by Konstantin Popadin, Leonard V. Polishchuk, Leila Mamirova, Dmitry Knorre, Konstantin Gunbin posted to e-slr by gjuggler on 2009-11-27 11:48:59 as
	The rates of molecular evolution in rodent and primate mitochondrial DNA. [My Copy] Journal of molecular evolution, Vol. 52, No. 1. (January 2001), pp. 40-50. by D. M. Weinreich posted to e-slr by gjuggler on 2009-11-27 11:47:55 as
	Phylogenetic test of the molecular clock and linearized trees. [My Copy] Molecular biology and evolution, Vol. 12, No. 5. (September 1995), pp. 823-833. by N. Takezaki, A. Rzhetsky, M. Nei posted to dupldiv by gjuggler on 2009-11-24 01:34:20 as along with 2 people usagi-kirin druvus
	Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. [My Copy] Nature genetics, Vol. 31, No. 2. (June 2002), pp. 205-209. by Xun Gu, Yufeng Wang, Jianying Gu posted to dupldiv by gjuggler on 2009-11-24 01:08:02 as along with 1 person FMoncini
	Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective. [My Copy] BMC genomics, Vol. 10 Suppl 1, No. Suppl 1. (2009), S14. by Yong Huang, Ying Zheng, Zhixi Su, Xun Gu posted to dupldiv by gjuggler on 2009-11-24 01:07:49 as along with 1 person anazhu86
	Functional Divergence in the Caspase Gene Family and Altered Functional Constraints: Statistical Analysis and Prediction [My Copy] Genetics, Vol. 158, No. 3. (1 July 2001), pp. 1311-1320. by Yufeng Wang, Xun Gu posted to dupldiv by gjuggler on 2009-11-23 21:27:46 as
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to short-reads rna-seq chip-seq by urgi on 2009-11-23 17:50:23 as along with 23 people and 2 groups Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Metabolic stability and epigenesis in randomly constructed genetic nets [My Copy] Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467. by S. Kauffman posted to grn_topology by antonkratz on 2009-11-23 15:37:45 as along with 7 people Dangerfc tomhebbron kinop verdicchio eldan wnpx gcalda
	Control motifs for intracellular regulatory networks. [My Copy] Annual review of biomedical engineering, Vol. 3 (2001), pp. 391-419. by C. V. Rao, A. P. Arkin posted to grn_topology by antonkratz on 2009-11-23 15:35:47 as
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to grn_topology by antonkratz on 2009-11-23 15:04:36 as along with 72 people and 10 groups jaspervoskuilen Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim complex networks GEB Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted to grn_topology by antonkratz on 2009-11-23 15:01:11 as along with 27 people and 8 groups dagmar biomcgary poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
	Topological and causal structure of the yeast transcriptional regulatory network [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 60-63. by Nabil Guelzim, Samuele Bottani, Paul Bourgine, Francois Kepes posted to grn_topology by antonkratz on 2009-11-23 14:53:21 as along with 5 people kentz kaarsinogen karfunkel Takayuki Borelli
	Network motifs in the transcriptional regulation network of Escherichia coli. [My Copy] Nature genetics, Vol. 31, No. 1. (22 May 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to grn_topology by antonkratz on 2009-11-23 14:47:56 as along with 19 people and 1 group vtraag sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation
	Modeling transcriptional control in gene networks—methods, recent results, and future directions [My Copy] Bulletin of Mathematical Biology, Vol. 62, No. 2. (1 March 2000), pp. 247-292. by Paul Smolen, Douglas Baxter, John Byrne posted to grn_model by antonkratz on 2009-11-23 14:22:27 as along with 3 people and 1 group dlobo klo wnpx GEB
	Systems Biology: Properties of Reconstructed Networks [My Copy] (16 January 2006) by Bernhard O. Palsson posted to books by antonkratz on 2009-11-23 14:00:07 as along with 4 people pjmaybank Scis0000002 mfisk fishtank
	Delimiting Species without Monophyletic Gene Trees [My Copy] Syst Biol, Vol. 56, No. 6. (1 December 2007), pp. 887-895. by Lacey L. Knowles, Bryan C. Carstens posted to species_trees monophyly gene_trees gene_tree by lizbiogen on 2009-11-23 13:41:33 as along with 1 person and 1 group stajich Mycology
	A Genomic Regulatory Network for Development [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678. by Eric H. Davidson, Jonathan P. Rast, Paola Oliveri, et al.Andrew Ransick, Cristina Calestani, Chiou-Hwa Yuh, Takuya Minokawa, Gabriele Amore, Veronica Hinman, Cesar Arenas-Mena, Ochan Otim, C. Titus Brown, Carolina B. Livi, Pei Y. Lee, Roger Revilla, Alistair G. Rust, Zheng Pan, Maria J. Schilstra, Peter J. C. Clarke, Maria I. Arnone, Lee Rowen, R. Andrew Cameron, David R. McClay, Leroy Hood, Hamid Bolouri posted to grn by antonkratz on 2009-11-23 13:07:52 as along with 11 people and 2 groups emptyhb yyfwuhan dlobo balajis adepace margaritis ccr lusk edvin dquest lukaswindhager GEB EisenLab
	Genome watch: Probiotics stick it to the man [My Copy] Nature Reviews Microbiology, Vol. 7, No. 12. (01 December 2009), pp. 843-843. by Alan Walker posted to general by gjuggler on 2009-11-23 12:47:30 as
	Improved visualization of protein consensus sequences by iceLogo [My Copy] Nature Methods, Vol. 6, No. 11. (01 November 2009), pp. 786-787. by Niklaas Colaert, Kenny Helsens, Lennart Martens, Joel Vandekerckhove, Kris Gevaert posted to visualization by gjuggler on 2009-11-23 12:47:10 as along with 1 person ngehlenborg
	Article-Level Metrics and the Evolution of Scientific Impact [My Copy] PLoS Biol, Vol. 7, No. 11. (17 November 2009), e1000242. by Cameron Neylon, Shirley Wu posted to open-access by gjuggler on 2009-11-23 12:46:38 as along with 30 people and 3 groups janderz8 richardmcgee suze biehl sci91078 rs renatomilani drmarkandersen sfalsharif MariaChiaraP hughesro gloriaoriggi Lbenmoha koczy gthorisson tnhh tharris ppgardne stajich archimedian niallhaslam dartar fgibson dullhunk allysonlister kevinemamy neils jobadge AJCann CameronNeylon Parenting 2.0 Journal picks Mycology
	The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs [My Copy] Nature Reviews Genetics, Vol. 10, No. 12. (01 December 2009), pp. 833-844. by Alain Jacquier posted to general by gjuggler on 2009-11-23 12:41:56 as along with 4 people and 1 group heliopais frohike qayub megraw Journal picks
	Evolutionary biology: Why reproduction often takes two [My Copy] Nature, Vol. 462, No. 7271. (18 November 2009), pp. 294-295. by Aneil F. Agrawal posted to general by gjuggler on 2009-11-23 12:41:19 as along with 3 people and 1 group yuhc qayub megraw Journal picks
	Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs. [My Copy] PloS one, Vol. 4, No. 11. (18 November 2009), e7888. by David López Herráez, Marc Bauchet, Kun Tang, et al.Christoph Theunert, Irina Pugach, Jing Li, Madhusudan R. Nandineni, Arnd Gross, Markus Scholz, Mark Stoneking posted to isochores by gjuggler on 2009-11-21 13:35:13 as along with 1 person phoenixzxl
	The isochore patterns of invertebrate genomes. [My Copy] BMC genomics, Vol. 10, No. 1. (18 November 2009) by Rosalia Cammarano, Maria Costantini, Giorgio Bernardi posted to isochores by gjuggler on 2009-11-21 13:35:02 as
	Assigning strains to bacterial species via the internet [My Copy] BMC Biology, Vol. 7, No. 1. (26 January 2009), 3. by Cynthia Bishop, David Aanensen, Gregory Jordan, Mogens Kilian, William Hanage, Brian Spratt posted to general by gjuggler on 2009-11-19 12:18:16 as along with 2 people trfield druvus
	The role of DNA shape in protein\|[ndash]\|DNA recognition [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1248-1253. by Remo Rohs, Sean M. West, Alona Sosinsky, Peng Liu, Richard S. Mann, Barry Honig posted to general by gjuggler on 2009-11-16 15:58:53 as along with 10 people vingron hagechouchin443 renatomilani emptyhb sandersl Fernando_FF operon kintoki TRHvidsten djkt
	Trees and networks before and after Darwin [My Copy] Biology Direct, Vol. 4, No. 1. (2009), 43. by Mark Ragan posted to general by gjuggler on 2009-11-16 14:06:02 as along with 3 people zwang Geknitics chancx
	Coexpression network based on natural variation in human gene expression reveals gene interactions and functions [My Copy] Genome Research, Vol. 19, No. 11. (1 November 2009), pp. 1953-1962. by Renuka R. Nayak, Michael Kearns, Richard S. Spielman, Vivian G. Cheung posted to check_me_out by antonkratz on 2009-11-16 10:00:19 as along with 9 people and 1 group nsc129psu iskathy lp2 TRHvidsten megraw owhitney rdiaz tmmurali natstreet Journal picks
	Systematic Association of Genes to Phenotypes by Genome and Literature Mining [My Copy] PLoS Biol, Vol. 3, No. 5. (5 April 2005), e134. by Jan O. Korbel, Tobias Doerks, Lars J. Jensen, et al.Carolina Perez-Iratxeta, Szymon Kaczanowski, Sean D. Hooper, Miguel A. Andrade, Peer Bork posted to general by gjuggler on 2009-11-15 08:28:03 as along with 14 people and 1 group anthropomorphism Enro setar miguel tmmurali kuhn imouthesmp yas balajis benny hpiwowar fisherp jdiggans larsjuhljensen T_lab
	Seasonal variation in satellite-derived effects of aerosols on clouds in the Arabian Sea [My Copy] Journal of Geophysical Research - Atmospheres, Vol. 113, No. D9. (15 May 2008), D09207. by Thomas A. Jones, Sundar A. Christopher posted to sync-test by gjuggler on 2009-11-13 13:31:10 as along with 4 people ravikiranv arragi harish cermak
	Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes [My Copy] Analytical Chemistry, Vol. 0, No. 0. (0000) by Colin Wynne, Catherine Fenselau, Plamen A. Demirev, Nathan Edwards posted to sync-test by gjuggler on 2009-11-13 13:29:29 as along with 2 people brianb nedwards
	False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule [My Copy] Journal of Proteome Research, Vol. 8, No. 9. (4 September 2009), pp. 4173-4181. by Nitin Gupta, Pavel A. Pevzner posted to sync-test by gjuggler on 2009-11-13 11:05:54 as along with 3 people nedwards carlosjavierna brianb
	High mitogenomic evolutionary rates and time dependency. [My Copy] Trends in genetics : TIG, Vol. 25, No. 11. (14 November 2009), pp. 482-486. by Sankar Subramanian, Dee R. Denver, Craig D. Millar, et al.Tim Heupink, Angelique Aschrafi, Steven D. Emslie, Carlo Baroni, David M. Lambert posted to evo-rate by gjuggler on 2009-11-13 10:43:59 as along with 2 people and 1 group operon ppgardne Journal picks
	Gene conversion among paralogs results in moderate false detection of positive selection using likelihood methods. [My Copy] Journal of molecular evolution, Vol. 68, No. 6. (June 2009), pp. 679-687. by Claudio Casola, Matthew W. Hahn posted to e-slr by gjuggler on 2009-11-11 21:42:04 as
	TOPD/FMTS: a new software to compare phylogenetic trees [My Copy] Bioinformatics, Vol. 23, No. 12. (25 April 2007), pp. btm135-1558. by Pere Puigbo, Santiago Garcia-Vallve, James O. McInerney posted to phylogenetics by gjuggler on 2009-11-09 10:02:54 as along with 6 people vallve sharpton BioNica druvus dparks tny
	Modulation of ADAR1 editing activity by Z-RNA in vitro [My Copy] Nucl. Acids Res., Vol. 33, No. 16. (21 September 2005), pp. 5362-5370. by Michael Koeris, Lars Funke, Jay Shrestha, Alexander Rich, Stefan Maas posted to z-dna by antonkratz on 2009-11-09 08:14:08 as
	Z-DNA-binding proteins can act as potent effectors of gene expression invivo [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 26. (24 December 2002), pp. 16666-16671. by Doo-Byoung Oh, Yang-Gyun Kim, Alexander Rich posted to z-dna by antonkratz on 2009-11-09 08:11:23 as
	DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response [My Copy] Nature, Vol. 448, No. 7152. (08 July 2007), pp. 501-505. by Akinori Takaoka, ZhiChao Wang, Myoung K. Choi, et al.Hideyuki Yanai, Hideo Negishi, Tatsuma Ban, Yan Lu, Makoto Miyagishi, Tatsuhiko Kodama, Kenya Honda, Yusuke Ohba, Tadatsugu Taniguchi posted to zbp1 z-dna by antonkratz on 2009-11-09 08:08:21 as along with 1 person Pezda
	All is not Toll: new pathways in DNA recognition [My Copy] J. Exp. Med., Vol. 203, No. 2. (21 February 2006), pp. 265-268. by Hermann Wagner, Stefan Bauer posted to z-dna by antonkratz on 2009-11-09 08:04:40 as
	Z-DNA-forming sequences generate large-scale deletions in mammalian cells [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 8. (21 February 2006), pp. 2677-2682. by Guliang Wang, Laura A. Christensen, Karen M. Vasquez posted to z-dna by antonkratz on 2009-11-09 08:03:35 as
	HIF-1 regulates heritable variation and allele expression phenotypes of the macrophage immune response gene SLC11A1 from a Z-DNA forming microsatellite [My Copy] Blood, Vol. 110, No. 8. (15 October 2007), pp. 3039-3048. by Henry K. Bayele, Carole Peyssonnaux, Alexandra Giatromanolaki, et al.Wagner W. Arrais-Silva, Hiba S. Mohamed, Helen Collins, Selma Giorgio, Michael Koukourakis, Randall S. Johnson, Jenefer M. Blackwell, Victor Nizet, Surjit K. Srai posted to z-dna by antonkratz on 2009-11-09 07:57:48 as along with 1 person emarker
	Cooperative Activity of BRG1 and Z-DNA Formation in Chromatin Remodeling [My Copy] Mol. Cell. Biol., Vol. 26, No. 7. (1 April 2006), pp. 2550-2559. by Hong Liu, Niveen Mulholland, Haiqing Fu, Keji Zhao posted to z-dna by antonkratz on 2009-11-09 07:56:22 as
	d(TG)nmiddle dotd(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription [My Copy] Nucl. Acids Res., Vol. 18, No. 6. (25 March 1990), pp. 1595-1601. by Louise H. Naylor, Elizabeth M. Clark posted to z-dna by antonkratz on 2009-11-09 07:54:55 as
	Central dogma of molecular biology. [My Copy] Nature, Vol. 227, No. 5258. (8 August 1970), pp. 561-563. by F. Crick posted to thesis by antonkratz on 2009-11-08 08:02:59 as
	Functional Evolution of cis-Regulatory Modules at a Homeotic Gene in Drosophila [My Copy] PLoS Genet, Vol. 5, No. 11. (6 November 2009), e1000709. by Margaret C. W. Ho, Holly Johnsen, Sara E. Goetz, et al.Benjamin J. Schiller, Esther Bae, Diana A. Tran, Andrey S. Shur, John M. Allen, Christoph Rau, Welcome Bender, William W. Fisher, Susan E. Celniker, Robert A. Drewell posted to hox_genes flies cis-regulatory by cisevol to the group cis-regulatory-evolution on 2009-11-07 14:07:43 as along with 1 person emptyhb
	Gene regulation in primates evolves under tissue-specific selection pressures. [My Copy] PLoS genetics, Vol. 4, No. 11. (21 November 2008), e1000271. by Ran Blekhman, Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad posted to tss-breadth by gjuggler on 2009-11-06 14:21:28 as along with 12 people and 2 groups gderwin JustinCrocker Zephyrus bpcusack bertrandservin cisevol operon emptyhb shoshin djkt gdb caseybrown R.E.A.D cis-regulatory-evolution

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phylogenetics	249
tree	119
evolution	109
methods	107
genome_size	88
mammal	71
review	71
tools	70
genome_evolution	54
indel	51
repeats	47
mutation_rate	45
comparative_genomics	44
phylogenomics	44
bat	43
selection	41
alignment	40
regulatory	39
genome	37
congruence	35
bayesian	33
whole_genome	32
cns	31
transposon	29
genomics	26
human_genome	26
primate	25
likelihood	24
coding	22
population_genetics	21
human	19
mutation	18
gc	17
rare_genomic_characters	17
sequence	17
algorithm	16
retrotransposon	16
substitution_rate	16
simulation	15
platyrrhini	13
congruence_landscapes	12
element	12
model	12
conservation	11
mitochondria	11
root_eutheria	11
time	11
bacteria	10
chimp	10
homo-pan-gorilla	10
isochore	10
jc	10
mcs	10
msa	10
nisc	10
parsimony	10
bac	9
functional	9
lineage_sorting	9
morphology	9
motif	9
plants	9
tfbs	9
theria	9
encode	8
flying_dna	8
horizontal_gene_transfer	8
long_branch_attraction	8
non-coding	8
phil	8
recombination	8
speciation	8
mouse	7
tree_visualization	7
book	6
coalescent	6
consensus	6
drosophila	6
indel_rate	6
missing_data	6
model_choice	6
molecular_clock	6
nucleotypic_effect	6
phylogenetic_accuracy	6
repeat	6
rodents	6
signature	6
sox10	6
time_tree	6
binfo	5
bird	5
chicken	5
colorectal_cancer	5
cpg	5
cytogenetics	5
enhancer	5
fish	5
gdf6	5
gene_geneology	5
glires	5
hmm	5
map	5
methylation	5
molecular_evolution	5
monotreme	5
ncrna	5
ortholog	5
plant	5
promoter	5
rearrangement	5
theory	5
ultraconserved	5
variation	5
yeast	5
afrotheria	4
alignment_error	4
analysis	4
atlantogenata	4
bac_mapping	4
chip	4
chromatin	4
correlations	4
exon	4
genome_paper	4
genomic	4
ild	4
intrinsic_features	4
joint	4
karyotype	4
model_selection	4
murphy	4
neutral	4
overgo	4
placental	4
protein	4
ry_coding	4
signal	4
splicing	4
star_paradox	4
supertree	4
ucsc	4
zooseq	4
bias	3
bioinformatics	3
bootstrap	3
centromere	3
cetartiodactyla	3
development	3
dinosaur	3
dog	3
epigenetics	3
exactplus	3
functional_genomics	3
homoplasy	3
island	3
laurasiatheria	3
marsupionta	3
microinversions	3
mrbayes	3
partitioning	3
phylogenetic_signal	3
root	3
sequencing	3
simultaneous_inference	3
sine	3
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synteny	3
aa	2
alu	2
assembly	2
base_composition	2
boreoeutheria	2
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career	2
carnivore	2
cichlid	2
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dnasei	2
duplication	2
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est	2
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fpc	2
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human_evolution	2
hybridization	2
insertion_site_bias	2
intraspecifc_variation	2
line	2
lrt	2
mammoth	2
medical_genetics	2
mexico	2
microrna	2
microsatellite	2
nags	2
non-phylogenetic_signal	2
outgroup	2
paleontology	2
paralog	2
phastcons	2
pipmaker	2
positive_selection	2
rat	2
raxml	2
reptile	2
rodent	2
saturation	2
sliding_window	2
software	2
structural_variation	2
tba	2
transfac	2
tree_comparison	2
454	1
alligator	1
amphibian	1
amphipod	1
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arabadopsis	1
archaea	1
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bed	1
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block_bootstrap	1
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darwin	1
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design	1
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enzyme	1
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evolutionary_medicine	1
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feulgen	1
finishing	1
fitness	1
fly	1
fossil	1
frog	1
fugu	1
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gaps	1
gblocks	1
gencode	1
gene_conversion	1
gene_deserts	1
gene_flow	1
genetic_code	1
genetic_disease	1
gene_tree	1
goldfish	1
hidden	1
histone	1
history	1
history-of-science	1
hky85	1
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horse	1
hplc	1
hubmed	1
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inde_rate	1
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method	1
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modeltest	1
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mom	1
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nature	1
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nj	1
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pubmed	1
r	1
recon	1
regulation	1
replication	1
reverse_genetics	1
sampling	1
search	1
seq-gen	1
shark	1
silkworm	1
single_gene	1
social_class	1
soop	1
spacing	1
strand	1
structure	1
supermatrix	1
systematic	1
systematic_bias	1
tag	1
tandem_duplications	1
tandem_repeats	1
targeted_sequencing	1
taxon_sampling	1
tetraodon	1
textbook	1
thomas	1
transcription	1
trees	1
tree_shrew	1
trophoblast	1
tuatara	1
upgma	1
uprobe	1
usage	1
visualization	1
web	1
wgs	1
whale	1
xenarthra	1

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