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arcticrasta's search [18 articles]

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  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric SS Lander, Jim Kent, Webb Miller, David Haussler
    posted to bioinformatics gene rna search by arcticrasta on 2006-06-22 18:40:38 as ** along with 11 people and 2 groups marcius eckart_bindewald tardigrade tabu mtagaya Eonwe ilh djkt raylim tale hpaces BioinfoCIPF SGU-CIPF
  • Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 19-30.
    by S Washietl, IL Hofacker
    posted to bioinformatics gene rna search by arcticrasta on 2006-06-22 17:48:15 as ** along with 4 people dayjm Eonwe ilh elfar
  • HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns
    Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 196-198.
    by Stefan Graf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger
    posted to bioinformatics pattern rna search by arcticrasta on 2006-06-22 10:11:16 as ** along with 1 person Eonwe
  • GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 762-764.
    by W Gerlach, R Giegerich
    posted to bioinformatics motif rna search by arcticrasta on 2006-06-21 16:57:29 as ** along with 1 person and 1 group andersbj microRNA
  • A method for aligning RNA secondary structures and its application to RNA motif detection.
    BMC Bioinformatics, Vol. 6 (2005)
    by J Liu, JT Wang, J Hu, B Tian
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 19:25:59 as ** along with 2 people and 1 group vwchan emidio_capriotti beta
  • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles.
    J Mol Biol, Vol. 313, No. 5. (9 November 2001), pp. 1003-1011.
    by D Gautheret, A Lambert
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 18:40:37 as ** along with 1 person evaf
  • Pair hidden Markov models on tree structures.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Sakakibara
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 17:49:45 as **
  • Sequence-based heuristics for faster annotation of non-coding RNA families.
    Bioinformatics (2 November 2005)
    by Zasha Weinberg, Walter LL Ruzzo
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 17:32:57 as ** along with 1 person jwortman
  • Rapid and sensitive sequence comparison with FASTP and FASTA.
    Methods Enzymol, Vol. 183 (1990), pp. 63-98.
    by WR Pearson
    posted to bioinformatics homology search by arcticrasta on 2006-06-17 12:20:05 as ** along with 4 people jmeppley treangen jlh64 granujilla
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
    posted to bioinformatics homology search by arcticrasta on 2006-06-17 10:31:06 as ** along with 9 people and 2 groups ffranca gurkanbebek bsmagic CitoJam lusk cjeans sujaikumar Ema bozdagd Bioinformatics bioinplant
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to bioinformatics homology search by arcticrasta on 2006-06-17 09:07:50 as ** along with 45 people and 6 groups pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • An algorithm for detecting homologues of known structured RNAs in genomes.
    Proc IEEE Comput Syst Bioinform Conf (2004), pp. 300-310.
    by SY Le, JV Maizel, K Zhang
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-16 16:33:03 as ** along with 2 people and 4 groups marcius bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
  • Searching for patterns in genomic data
    Trends in Genetics, Vol. 13, No. 12. (December 1997), pp. 497-498.
    by Mark Dsouza, Niels Larsen, Ross Overbeek
    posted to bioinformatics motifs rna search by arcticrasta on 2006-03-31 16:17:16 as **
  • A software tool-box for analysis of regulatory RNA elements
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3441-3445.
    by Peter Bengert, Thomas Dandekar
    posted to bioinformatics motifs rna rnaanalyzer search by arcticrasta on 2006-03-20 14:04:32 as **
  • An RNA pattern matching program with enhanced performance and portability.
    Comput Appl Biosci, Vol. 10, No. 2. (April 1994), pp. 211-212.
    by A Laferrière, D Gautheret, R Cedergren
    posted to bioinformatics motif pattern rna search by arcticrasta on 2006-03-11 16:44:49 as ** along with 1 person dquest
  • Prediction of mammalian microRNA targets.
    Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798.
    by BP Lewis, IH Shih, MW Jones-Rhoades, DP Bartel, CB Burge
    posted to bioinformatics mammalian microrna motifs rna search by arcticrasta on 2006-03-11 12:14:27 as ** along with 8 people and 2 groups giovenko jfr maryee eckart_bindewald mortenlindow kt mtagaya akiezun Bioinformatics microRNA
  • Automatic identification of group I intron cores in genomic DNA sequences.
    J Mol Biol, Vol. 235, No. 4. (28 January 1994), pp. 1206-1217.
    by F Lisacek, Y Diaz, F Michel
    posted to bioinformatics citron motifs rna search by arcticrasta on 2006-03-11 12:06:10 as ** along with 1 person zhouyu
  • Very fast identification of RNA motifs in genomic DNA. Application to tRNA search in the yeast genome.
    J Mol Biol, Vol. 264, No. 1. (22 November 1996), pp. 46-55.
    by N el-Mabrouk, F Lisacek
    posted to bioinformatics motifs rna search by arcticrasta on 2006-03-11 12:02:57 as **
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