aswin's library 167 articles Export

	Dynamics and interplay of nuclear architecture, genome organization, and gene expression. [My Copy] Genes Dev, Vol. 21, No. 23. (1 December 2007), pp. 3027-3043. by R. Schneider, R. Grosschedl posted to gene_expression genome_organization nuclear_architecture transcription by aswin on 2007-12-10 16:47:29 as along with 2 people inesdesantiago sebastien_vigneau
	An overview of image-processing methods for Affymetrix GeneChips. [My Copy] Brief Bioinform (5 December 2007) by Jose M M. Arteaga-Salas, Harry Zuzan, William B B. Langdon, Graham J G J. Upton, Andrew P P. Harrison posted to array image_processing methods by aswin on 2007-12-10 16:43:29 as along with 6 people and 1 group bertelsen lwaldron neils guhjy jfr yevishere Bioinformatics
	Distinct physiological states of Plasmodium falciparum in malaria-infected patients. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 1091-1095. by J. P. Daily, D. Scanfeld, N. Pochet, et al.K. Le Roch, D. Plouffe, M. Kamal, O. Sarr, S. Mboup, O. Ndir, D. Wypij, K. Levasseur, E. Thomas, P. Tamayo, C. Dong, Y. Zhou, E. S. Lander, D. Ndiaye, D. Wirth, E. A. Winzeler, J. P. Mesirov, A. Regev posted to malaria parasite plasmodium transcription by aswin on 2007-12-04 10:18:03 as along with 4 people chica semrich tmmurali shuzhens
	The structural basis of cyclic diguanylate signal transduction by PilZ domains [My Copy] The EMBO Journal, Vol. aop, No. current. (22 November 2007) by Jordi Benach, Swarup S. Swaminathan, Rita Tamayo, et al.Samuel K. Handelman, Ewa Folta-Stogniew, John E. Ramos, Farhad Forouhar, Helen Neely, Jayaraman Seetharaman, Andrew Camilli, John F. Hunt posted to cdigmp by aswin on 2007-11-26 11:39:30 as
	Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression [My Copy] Nucl. Acids Res., Vol. 32, No. 12. (8 July 2004), e99. by Cheng-Chung Chou, Chun-Houh Chen, Te-Tsui Lee, Konan Peck posted to probe by aswin on 2007-11-21 14:09:49 as along with 2 people stsaft bertelsen
	Exploring Expression Data: Identification and Analysis of Coexpressed Genes [My Copy] Genome Research, Vol. 9, No. 11. (1 November 1999), pp. 1106-1115. by Laurie J. Heyer, Semyon Kruglyak, Shibu Yooseph posted to no-tag by aswin on 2007-11-13 17:05:56 as along with 2 people jperkins daveGerrard
	Bacterial morphology: why have different shapes? [My Copy] Curr Opin Microbiol (1 November 2007) by Kevin D D. Young posted to bacteria shape size by aswin on 2007-11-08 16:45:50 as along with 1 person and 1 group friveroll APCM
	Functional Specificity among Ribosomal Proteins Regulates Gene Expression. [My Copy] Cell, Vol. 131, No. 3. (2 November 2007), pp. 557-571. by S. Komili, N. G. Farny, F. P. Roth, P. A. Silver posted to duplication ribosom yeast by aswin on 2007-11-08 16:44:33 as along with 3 people YukaH stajich cjeans
	Legionella pneumophila proteins that regulate Rab1 membrane cycling [My Copy] Nature (21 October 2007) by Alyssa Ingmundson, Anna Delprato, David G. Lambright, Craig R. Roy posted to host legionella by aswin on 2007-10-31 12:22:08 as
	Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium. [My Copy] Proc Natl Acad Sci U S A (24 October 2007) by Katie Brenner, David K K. Karig, Ron Weiss, Frances H H. Arnold posted to biofilm community by aswin on 2007-10-31 12:21:55 as along with 1 person austin
	Genetic basis of proteome variation in yeast [My Copy] Nature Genetics, Vol. 39, No. 11. (21 October 2007), pp. 1369-1375. by Eric J. Foss, Dragan Radulovic, Scott A. Shaffer, et al.Douglas M. Ruderfer, Antonio Bedalov, David R. Goodlett, Leonid Kruglyak posted to proteome variation yeast by aswin on 2007-10-31 12:21:41 as along with 7 people fishtank engelhardt balicea lp2 roys caseybrown emptyhb
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted to motif regulation by aswin on 2007-10-31 12:13:41 as along with 17 people and 2 groups cerca ilyashl TRHvidsten leelarcombe kieran101 ana brant cwbrown cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
	Life in Darwin's dust: intercontinental transport and survival of microbes in the nineteenth century. [My Copy] Environ Microbiol (23 October 2007) by Anna A A. Gorbushina, Renate Kort, Anette Schulte, et al.David Lazarus, Bernhard Schnetger, Hans-Jürgen J. Brumsack, William J J. Broughton, Jocelyne Favet posted to bacteria survival by aswin on 2007-10-31 12:08:37 as
	The evolution of genetic networks by non-adaptive processes. [My Copy] Nature reviews. Genetics, Vol. 8, No. 10. (October 2007), pp. 803-813. by Michael Lynch posted to evolution network transcription by aswin on 2007-10-16 21:36:40 as along with 14 people and 2 groups operon colmryan cambray dswan brant balicea dchughes stajich margaritis zwang nosada17 Stew lilith lusk G4ID Genetics-of-Gambling
	Chemosensory pathways, motility and development in Myxococcus xanthus. [My Copy] Nat Rev Microbiol (8 October 2007) by David R R. Zusman, Ansley E E. Scott, Zhaomin Yang, John R R. Kirby posted to motility myxococcus by aswin on 2007-10-16 21:35:34 as along with 2 people cambray RebeccaHamer
	Type VII secretion - mycobacteria show the way. [My Copy] Nat Rev Microbiol (8 October 2007) by Abdallah M M. Abdallah, Nicolaas C C. Gey van Pittius, Patricia A A. Digiuseppe Champion, et al.Jeffery Cox, Joen Luirink, Christina M J E M. Vandenbroucke-Grauls, Ben J J. Appelmelk, Wilbert Bitter posted to mycobacteria secretion by aswin on 2007-10-16 21:35:15 as along with 1 person xingxu
	Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. [My Copy] J Bacteriol, Vol. 187, No. 5. (March 2005), pp. 1792-1798. by D. A. Ryjenkov, M. Tarutina, O. V. Moskvin, M. Gomelsky posted to cdigmp by aswin on 2007-10-08 16:24:42 as
	Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation [My Copy] Molecular Microbiology, Vol. 60, No. 2. (April 2006), pp. 331-348. by Bentley Lim, Sinem Beyhan, James Meir, Fitnat H. Yildiz posted to cdigmp by aswin on 2007-10-08 16:23:57 as along with 1 person CareyNadell
	Structural classification of bacterial response regulators: diversity of output domains and domain combinations. [My Copy] J Bacteriol, Vol. 188, No. 12. (June 2006), pp. 4169-4182. by M. Y. Galperin posted to cdigmp by aswin on 2007-10-08 16:23:10 as along with 1 person Sjitprasutwit
	The HD domain defines a new superfamily of metal-dependent phosphohydrolases [My Copy] Trends in Biochemical Sciences, Vol. 23, No. 12. (1 December 1998), pp. 469-472. by L. Aravind posted to cdigmp by aswin on 2007-10-08 16:22:47 as along with 1 person danieljameson
	The protein network of bacterial motility [My Copy] Mol Syst Biol, Vol. 3 (31 July 2007) by Seesandra V. Rajagopala, Bjorn Titz, Johannes Goll, et al.Jodi R. Parrish, Katrin Wohlbold, Matthew T. Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L. Finley, Peter Uetz posted to bacteria motility protein_network by aswin on 2007-08-08 12:40:16 as along with 7 people and 3 groups druvus grahamc jmrivort zwang Pao-Yang carlk cerca G-quadruplex Supramolecular OPIG
	A metabolic sensor governing cell size in bacteria. [My Copy] Cell, Vol. 130, No. 2. (27 July 2007), pp. 335-347. by R. B. Weart, A. H. Lee, A. C. Chien, D. P. Haeusser, N. S. Hill, P. A. Levin posted to bacteria nutrient by aswin on 2007-07-31 11:45:56 as along with 2 people jjray margaritis
	Modelling Transcriptional Interference and DNA Looping in Gene Regulation [My Copy] Journal of Molecular Biology, Vol. 369, No. 5. (22 June 2007), pp. 1200-1213. by Ian B. Dodd, Keith E. Shearwin, Kim Sneppen posted to looping phage by aswin on 2007-06-05 12:39:30 as
	Distinctive Topologies of Partner-switching Signaling Networks Correlate with their Physiological Roles. [My Copy] J Mol Biol, Vol. 369, No. 5. (22 June 2007), pp. 1333-1352. by O. A. Igoshin, M. S. Brody, C. W. Price, M. A. Savageau posted to bacillus network by aswin on 2007-06-05 12:23:51 as along with 1 person jjray
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted to chip sequencing by aswin on 2007-06-04 12:09:26 as along with 24 people and 5 groups oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
	Control of gene expression in trypanosomes [My Copy] Microbiol. Rev., Vol. 59, No. 2. (1 June 1995), pp. 223-240. by L. Vanhamme, E. Pays posted to trypanosome by aswin on 2007-05-25 15:27:42 as
	Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae. [My Copy] Biotechnol Bioeng, Vol. 89, No. 7. (30 March 2005), pp. 839-847. by C. Wittmann, M. Hans, W. A. van Winden, C. Ras, J. J. Heijnen posted to cell-cycle metabolism yeast by aswin on 2007-05-22 16:39:20 as
	TFmodeller: comparative modelling of protein-DNA complexes. [My Copy] Bioinformatics (25 April 2007) by Bruno Contreras-Moreira, Pierre-Alain A. Branger, Julio Collado-Vides posted to protein-dna by aswin on 2007-05-01 13:43:07 as along with 1 person chrn
	High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. [My Copy] Nat Biotechnol (1 April 2007) by Patrick T T. McGrath, Honglak Lee, Li Zhang, et al.Antonio A A. Iniesta, Alison K K. Hottes, Meng How H. Tan, Nathan J J. Hillson, Ping Hu, Lucy Shapiro, Harley H H. McAdams posted to caulobacter tiling by aswin on 2007-04-19 17:22:31 as along with 2 people idoerg zwang
	DNA replication initiation: mechanisms and regulation in bacteria [My Copy] Nature Reviews Microbiology, Vol. 5, No. 5., pp. 343-354. by Melissa L. Mott, James M. Berger posted to e_coli replication by aswin on 2007-04-18 17:46:28 as along with 2 people dbikard Petersarkies
	The origin of eukaryotes: a reappraisal. [My Copy] Nat Rev Genet (12 April 2007) by Christian de Duve posted to eukaryotes by aswin on 2007-04-16 11:59:14 as along with 2 people and 2 groups dchughes dandaman G4ID Genetics-of-Gambling
	Just-in-time transcription program in metabolic pathways. [My Copy] Nat Genet, Vol. 36, No. 5. (May 2004), pp. 486-491. by A. Zaslaver, A. E. Mayo, R. Rosenberg, et al.P. Bashkin, H. Sberro, M. Tsalyuk, M. G. Surette, U. Alon posted to jit by aswin on 2007-04-16 10:02:02 as along with 3 people imouthesmp Norlins comb
	Posttranscriptional expression regulation: what determines translation rates? [My Copy] PLoS computational biology, Vol. 3, No. 3. (23 March 2007) by R. Brockmann, A. Beyer, J. J. Heinisch, T. Wilhelm posted to translation by aswin on 2007-03-29 13:30:59 as along with 4 people and 1 group schwartzjmc gpalidwor oelemento roys Bioinformatics
	The role of small RNAs in quorum sensing. [My Copy] Curr Opin Microbiol (24 March 2007) by Michal Bejerano-Sagie, Karina Bivar B. Xavier posted to qs srna by aswin on 2007-03-29 13:21:29 as along with 1 person jec105
	Metabolic modeling of a mutualistic microbial community [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Sergey Stolyar, Steve Van Dien, Kristina L. Hillesland, et al.Nicolas Pinel, Thomas J. Lie, John A. Leigh, David A. Stahl posted to community fba by aswin on 2007-03-20 16:14:32 as along with 5 people and 2 groups marcio JeremyZucker kevinemamy cjeans athleem MetabolicModeling clab
	Regulation of metabolic networks by small molecule metabolites [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (13 March 2007), 88. by Alex Gutteridge, Minoru Kanehisa, Susumu Goto posted to metabolic transcription by aswin on 2007-03-20 12:26:11 as along with 3 people and 1 group schwartzjmc marodoc shung Bioinformatics
	Metabolic systems cost-benefit analysis for interpreting network structure and regulation. [My Copy] Bioinformatics (7 March 2007) by Ross P P. Carlson posted to flux metabolic metabolism by aswin on 2007-03-20 12:24:21 as along with 1 person michaelbarton
	Dose Response Relationship in Anti-Stress Gene Regulatory Networks [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e24. by Qiang Zhang, Melvin E. Andersen posted to modelling stress by aswin on 2007-03-07 11:54:20 as along with 2 people dquest margaritis
	Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of [sigma]s activity and levels [My Copy] The EMBO Journal, Vol. aop, No. current. (01 March 2007) by Athanasios Typas, Claudia Barembruch, Alexandra Possling, Regine Hengge posted to crl stationary_phase by aswin on 2007-03-06 16:18:31 as
	Positioning of chemosensory clusters in E. coli and its relation to cell division [My Copy] The EMBO Journal, Vol. aop, No. current. (01 March 2007) by Sebastian Thiem, David Kentner, Victor Sourjik posted to ecoli sensory spatial by aswin on 2007-03-06 16:17:35 as
	The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing [My Copy] Molecular Microbiology, Vol. 63, No. 3. (February 2007), pp. 859-871. by Lenz, H. Derrick, Bassler, L. Bonnie posted to no-tag by aswin on 2007-02-21 16:26:36 as along with 1 person CareyNadell
	The molecular basis of selective promoter activation by the sigma subunit of RNA polymerase. [My Copy] Mol Microbiol, Vol. 63, No. 5. (March 2007), pp. 1296-1306. by A. Typas, G. Becker, R. Hengge posted to no-tag by aswin on 2007-02-21 16:26:31 as along with 1 person shana
	Cross-talk between type three secretion and flagellar assembly in Pseudomonas aeruginosa. [My Copy] J Bacteriol (16 February 2007) by Chantal Soscia, Abderrahman Hachani, Alain Bernadac, Alain Filloux, Sophie Bleves posted to no-tag by aswin on 2007-02-21 16:26:26 as along with 2 people SozaBaban martainn
	Repression of intracellular virulence factors in Salmonella by the Hha and YdgT nucleoid-associated proteins. [My Copy] J Bacteriol (16 February 2007) by Umaporn Silphaduang, Mariola Mascarenhas, Mohamed Karmali, Brian K K. Coombes posted to no-tag by aswin on 2007-02-21 16:26:22 as
	Signaling pathways activated by microorganisms. [My Copy] Curr Opin Cell Biol (13 February 2007) by Osamu Takeuchi, Shizuo Akira posted to bacteria signaling by aswin on 2007-02-20 17:44:57 as along with 1 person Pezda
	Nutrient-regulated gene expression in eukaryotes. [My Copy] Biochem Soc Symp, No. 73. (2006), pp. 85-96. by R. J. Reece, L. Beynon, S. Holden, A. D. Hughes, K. Rébora, C. A. Sellick posted to metabolism transcription yeast by aswin on 2007-02-13 23:02:37 as
	The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection. [My Copy] Cell, Vol. 128, No. 3. (9 February 2007), pp. 613-624. by A. L. Watters, P. Deka, C. Corrent, et al.D. Callender, G. Varani, T. Sosnick, D. Baker posted to evolution folding by aswin on 2007-02-12 14:03:28 as along with 3 people and 1 group aalibes dpollard martainn EisenLab
	Cross-talk and decision making in MAP kinase pathways. [My Copy] Nat Genet (28 January 2007) by Megan N N. McClean, Areez Mody, James R R. Broach, Sharad Ramanathan posted to modelling mapk by aswin on 2007-02-09 13:56:06 as along with 3 people and 1 group ccots jjray arne dIEMoSIRIS
	The performance of the translational apparatus varies with the ecological strategies of bacteria. [My Copy] J Bacteriol (2 February 2007) by Les Dethlefsen, Thomas M M. Schmidt posted to translation by aswin on 2007-02-09 13:43:02 as
	Robustness can evolve gradually in complex regulatory gene networks with varying topology. [My Copy] PLoS computational biology, Vol. 3, No. 2. (2 February 2007), e15. by S. Ciliberti, O. C. Martin, A. Wagner posted to robustness network abstract_stuff by aswin on 2007-02-05 12:36:52 as along with 17 people and 4 groups chica biomcgary kaarsinogen eldan ccots indigoviolet emilyhare entropy nickluscombe kengg dolhuis timflutre grahamc shigepong kynn carneiro phoenixzxl EisenLab EBI-regulation SNE Plantandetc

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bacteria	25
e_coli	18
yeast	13
biofilm	11
networks	8
cdigmp	7
microarray	7
review	7
evolution	6
modelling	6
transcription	6
community	5
gene_expression	5
metabolic	5
network	5
pathogenesis	5
tf	5
chip	4
structure	4
t3ss	4
variation	4
circuit	3
host	3
metabolism	3
plasmodium	3
protein_network	3
qs	3
swarming	3
bacterial_species	2
cell_division	2
chromatin	2
dynamics	2
environment	2
genetic_networks	2
hns	2
important	2
looping	2
motility	2
multicellularity	2
palsson	2
parasite	2
phenotype	2
pseudomonas	2
regulation	2
salmonella	2
sigma	2
signaling	2
stress	2
tf_binding	2
thermodynamics	2
translation	2
vatiability	2
abstract_stuff	1
adaptation	1
adhesion	1
annotation	1
array	1
bacillus	1
b_anthracis	1
bayesian	1
binding_energy	1
cai	1
caulobacter	1
cdna	1
cell-cycle	1
chemical_profiling	1
chemostat	1
colonization	1
communication	1
compendium	1
crl	1
cytoskeleton	1
dam	1
dataset	1
dbd	1
duplication	1
ecoli	1
elongation	1
entropy	1
envelope	1
epistasis	1
essential	1
essentiality	1
eukaryotes	1
fba	1
flhdc	1
flux	1
fnr	1
folding	1
genome_organization	1
gfp	1
graph	1
hub	1
ihf	1
image_processing	1
initiation	1
iron	1
jit	1
kinase	1
legionella	1
linear_genome	1
lrp	1
malaria	1
mapk	1
md	1
metagenomics	1
methods	1
methylation	1
motif	1
mrna_stability	1
mtb	1
mycobacteria	1
myxococcus	1
nuclear_architecture	1
nutrient	1
p53	1
perturbation	1
phage	1
phosphorylation	1
plasmid	1
pnet	1
population	1
probe	1
promoter	1
protein-dna	1
proteome	1
proteomics	1
recombination	1
replication	1
ribosom	1
riboswitch	1
rna_profiling	1
robustness	1
secretion	1
sensory	1
sequencing	1
shape	1
shigella	1
sigmae	1
sigma_factor	1
single_molecule	1
size	1
social_theory	1
spatial	1
sporulation	1
srna	1
stationary_phase	1
streptococcus	1
supercoiling	1
survival	1
systems	1
tiling	1
timecourse	1
trypanosome	1
vibrio	1
virus	1
wavelet	1
weird	1

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