austin's library 1175 articles Export

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	Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway. [My Copy] Journal of molecular biology, Vol. 308, No. 5. (18 May 2001), pp. 839-851. by R. Russell, D. Herschlag posted to folding kinetictrap ribozyme tetrahymena by austin on 2008-06-02 20:58:31 as
	Kinetic intermediates in RNA folding. [My Copy] Science (New York, N.Y.), Vol. 265, No. 5174. (12 August 1994), pp. 918-924. by P. P. Zarrinkar, J. R. Williamson posted to folding ribozyme tetrayhmena by austin on 2008-06-02 20:55:15 as
	Refinement and standardization of synthetic biological parts and devices [My Copy] Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793. by Barry Canton, Anna Labno, Drew Endy posted to syntheticbiology by austin on 2008-07-24 19:31:24 as along with 6 people dbikard Vincent_Rouilly gvillar guhjy marck grahamc
	In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification. [My Copy] Nucleosides, nucleotides & nucleic acids, Vol. 27, No. 8. (August 2008), pp. 949-966. by B. J. Boese, K. Corbino, R. R. Breaker posted to no-tag by austin on 2008-08-20 00:59:34 as
	Modular reporter hairpin ribozymes for analyzing molecular interactions. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 429 (2008), pp. 237-250. by S. H. Najafi-Shoushtari, M. Famulok posted to no-tag by austin on 2008-08-20 00:59:02 as
	Screening of molecular interactions using reporter hammerhead ribozymes. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 429 (2008), pp. 251-263. by J. S. Hartig, M. Famulok posted to no-tag by austin on 2008-08-20 00:58:37 as
	The incoherent feed-forward loop can generate non-monotonic input functions for genes [My Copy] Mol Syst Biol, Vol. 4 (15 July 2008) by Shai Kaplan, Anat Bren, Erez Dekel, Uri Alon posted to no-tag by austin on 2008-08-03 04:13:03 as along with 1 person Ema
	Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch [My Copy] Nucl. Acids Res. (16 July 2008), gkn443. by David Greber, Marie D. El-Baba, Martin Fussenegger posted to no-tag by austin on 2008-07-17 17:40:51 as along with 1 person guhjy
	Artificial DNA Made Exclusively of Nonnatural C-Nucleosides with Four Types of Nonnatural Bases [My Copy] J. Am. Chem. Soc., Vol. 130, No. 27. (9 July 2008), pp. 8762-8768. by Yasuhiro Doi, Junya Chiba, Tomoyuki Morikawa, Masahiko Inouye posted to no-tag by austin on 2008-07-09 16:39:06 as along with 1 person alexknight
	Computational design of orthogonal ribosomes [My Copy] Nucl. Acids Res. (3 June 2008), gkn354. by Lon M. Chubiz, Christopher V. Rao posted to no-tag by austin on 2008-06-17 02:52:36 as along with 1 person papamicd
	Synthetic morphology: prospects for engineered, self-constructing anatomies [My Copy] Journal of Anatomy, Vol. 212, No. 6. (June 2008), pp. 707-719. by Davies, A. Jamie posted to no-tag by austin on 2008-06-17 02:49:51 as along with 1 person zpinhead
	Proximity-dependent and proximity-independent trans-splicing in mammalian cells. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 6. (June 2008), pp. 1081-1094. by K. D. Viles, B. A. Sullenger posted to no-tag by austin on 2008-06-17 02:30:46 as
	Kinetic characterization of the first step of the ribozyme-catalyzed trans excision-splicing reaction [My Copy] FEBS Journal, Vol. 275, No. 12. (June 2008), pp. 3110-3122. by I. I. Dotson, P. Patrick, Sinha, Joy, Testa, M. Stephen posted to no-tag by austin on 2008-06-17 02:27:51 as
	Recursive construction of perfect DNA molecules from imperfect oligonucleotides. [My Copy] Molecular systems biology, Vol. 4 (2008) by G. Linshiz, T. B. Yehezkel, S. Kaplan, et al.I. Gronau, S. Ravid, R. Adar, E. Shapiro posted to no-tag by austin on 2008-06-17 02:02:34 as along with 3 people and 2 groups Vincent_Rouilly dbikard Ema Centre de Recherches Interdisciplinaires SynBioSys
	tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 5. (5 March 2002), pp. 2630-2635. by C. A. Myers, B. Kuhla, S. Cusack, A. M. Lambowitz posted to no-tag by austin on 2008-05-28 00:03:11 as
	A tyrosyl-tRNA synthetase binds specifically to the group I intron catalytic core. [My Copy] Genes & development, Vol. 6, No. 8. (August 1992), pp. 1357-1372. by Q. Guo, A. M. Lambowitz posted to no-tag by austin on 2008-05-28 00:01:42 as
	The neurospora CYT-18 protein suppresses defects in the phage T4 td intron by stabilizing the catalytically active structure of the intron core. [My Copy] Cell, Vol. 69, No. 3. (1 May 1992), pp. 483-494. by G. Mohr, A. Zhang, J. A. Gianelos, M. Belfort, A. M. Lambowitz posted to no-tag by austin on 2008-05-28 00:01:06 as
	Design Principles for Riboswitch Function [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (17 April 2009), e1000363. by Chase L. Beisel, Christina D. Smolke posted to no-tag by austin on 2009-06-20 03:42:27 as along with 5 people leemond31 swapanjain boko4ikameto erel10 reyez
	GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. [My Copy] Journal of molecular biology, Vol. 236, No. 1. (11 February 1994), pp. 49-63. by F. L. Murphy, T. R. Cech posted to mutagenesis ribozyme tetrahymena by austin on 2008-08-21 05:36:47 as
	Imaging Tetrahymena ribozyme splicing activity in single live mammalian cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 25. (9 December 2003), pp. 14892-14896. by S. Hasegawa, W. C. Jackson, R. Y. Tsien, J. Rao posted to ribozyme selection tetrahymena by austin on 2008-07-27 18:31:18 as
	Timing and dynamics of single cell gene expression in the arabinose utilization system. [My Copy] Biophysical journal (9 May 2008) by Judith A A. Megerle, Georg Fritz, Ulrich Gerland, Kirsten Jung, Joachim O O. Radler posted to no-tag by austin on 2008-07-25 21:39:19 as
	Riboswitches in eubacteria sense the second messenger cyclic di-GMP. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5887. (18 July 2008), pp. 411-413. by N. Sudarsan, E. R. Lee, Z. Weinberg, et al.R. H. Moy, J. N. Kim, K. H. Link, R. R. Breaker posted to no-tag by austin on 2008-07-23 20:52:42 as
	Prediction of RNA secondary structure by free energy minimization. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 270-278. by D. H. Mathews, D. H. Turner posted to folding rna by austin on 2008-07-04 23:58:34 as along with 2 people heliopais onufriev
	RNA folding during transcription. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 35 (2006), pp. 161-175. by T. Pan, T. Sosnick posted to folding ribozyme rna transcription by austin on 2008-07-04 14:00:08 as along with 1 person cactus
	Defossiling Fuel: How Synthetic Biology Can Transform Biofuel Production [My Copy] ACS Chem. Biol., Vol. 3, No. 1. (18 January 2008), pp. 13-16. by David Savage, F., Jeffrey Way, Pamela A. Silver posted to no-tag by austin on 2008-06-20 04:56:26 as along with 4 people and 1 group SciNika dbikard cambray grahamc SynBioSys
	A whole more than the sum of its synthetic parts. [My Copy] ACS chemical biology, Vol. 3, No. 1. (18 January 2008), pp. 27-29. by J. V. Wong, H. Song, L. You posted to no-tag by austin on 2008-06-20 04:56:03 as
	Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-Organized Biomolecular Systems [My Copy] ACS Chemical Biology, Vol. 3, No. 1. (1 January 2008), pp. 38-50. by Elizabeth H. C. Bromley, Kevin Channon, Efrosini Moutevelis, Derek N. Woolfson posted to no-tag by austin on 2008-06-20 04:55:30 as along with 7 people jwm patrickking markchen kevinchannon bethbromley ca3295 chdnw
	Synthetic biology for synthetic chemistry. [My Copy] ACS chemical biology, Vol. 3, No. 1. (18 January 2008), pp. 64-76. by J. D. Keasling posted to no-tag by austin on 2008-06-20 04:54:56 as
	Mathematical Analysis and Quantification of Fluorescent Proteins as Transcriptional Reporters. [My Copy] Biophys J (7 December 2007) by Xiao Wang, Beverly Errede, Timothy C C. Elston posted to no-tag by austin on 2008-06-19 04:59:01 as along with 3 people madhadron balabu ddcttrl
	MANIP: an interactive tool for modelling RNA. [My Copy] Journal of molecular graphics & modelling, Vol. 16, No. 4-6. (c 1998) by C. Massire, E. Westhof posted to no-tag by austin on 2008-06-19 04:56:02 as
	Targeted inactivation of francisella tularensis genes by group II introns. [My Copy] Applied and environmental microbiology, Vol. 74, No. 9. (May 2008), pp. 2619-2626. by S. A. Rodriguez, J. J. Yu, G. Davis, B. P. Arulanandam, K. E. Klose posted to no-tag by austin on 2008-06-19 04:53:01 as along with 1 person druvus
	Selection of a novel class of RNA-RNA interaction motifs based on the ligase ribozyme with defined modular architecture [My Copy] Nucl. Acids Res. (6 May 2008), gkn206. by Shoji P. Ohuchi, Yoshiya Ikawa, Yoshikazu Nakamura posted to no-tag by austin on 2008-06-19 04:52:13 as
	Engineering Escherichia coli heat-resistance by synthetic gene amplification [My Copy] Protein Engineering, Design and Selection (5 January 2008), gzm085. by Daniel Christ, Leo James, Jason W. Chin, Leo James posted to no-tag by austin on 2008-06-18 03:08:00 as
	Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis. [My Copy] RNA (New York, N.Y.), Vol. 13, No. 4. (April 2007), pp. 573-582. by R. Welz, R. R. Breaker posted to no-tag by austin on 2008-06-17 04:00:01 as along with 1 person erel10
	Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal. [My Copy] Molecular cell, Vol. 27, No. 1. (6 July 2007), pp. 79-90. by H. Celesnik, A. Deana, J. G. Belasco posted to no-tag by austin on 2008-06-17 03:54:06 as
	Expression of the tetA(C) tetracycline efflux pump in Escherichia coli confers osmotic sensitivity. [My Copy] FEMS microbiology letters, Vol. 190, No. 1. (1 September 2000), pp. 147-150. by T. A. Stavropoulos, C. A. Strathdee posted to no-tag by austin on 2008-06-15 22:10:18 as
	Plasmid-borne prokaryotic gene expression: sources of variability and quantitative system characterization. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 77, No. 2 Pt 1. (February 2008) by S. Bagh, M. Mazumder, T. Velauthapillai, et al.V. Sardana, G. Q. Dong, A. B. Movva, L. H. Lim, D. R. McMillen posted to no-tag by austin on 2008-06-14 04:15:24 as
	Recent insights on RNA folding mechanisms from catalytic RNA. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 57, No. 5. (May 2000), pp. 796-808. by S. A. Woodson posted to folding ribozyme rna by austin on 2008-06-02 20:59:53 as
	RNA loop-loop interactions as dynamic functional motifs [My Copy] Biochimie, Vol. 84, No. 9. (September 2002), pp. 925-944. by Christine Brunel, Roland Marquet, Pascale Romby, Chantal Ehresmann posted to no-tag by austin on 2008-05-12 01:41:41 as along with 1 person and 1 group condon beta
	Implications of Rewiring Bacterial Quorum Sensing [My Copy] Appl. Environ. Microbiol. (26 November 2007), AEM.01688-07. by Eric L. Haseltine, Frances H. Arnold posted to syntheticbiology by austin on 2008-03-07 02:10:59 as
	Highly efficient strand invasion by peptide nucleic acid bearing optically pure lysine residues in its backbone. [My Copy] Nucleic Acids Symp Ser (Oxf), No. 50. (2006), pp. 109-110. by Y. Yamamoto, J. Yoshida, T. Tedeschi, R. Corradini, S. Sforza, M. Komiyama posted to invasion pna strand by austin on 2008-01-11 22:23:32 as
	Gemini, a Bifunctional Enzymatic and Fluorescent Reporter of Gene Expression [My Copy] PLoS ONE, Vol. 4, No. 11. (4 November 2009), e7569. by Lance Martin, Austin Che, Drew Endy posted to syntheticbiology parts by austin on 2009-11-08 22:58:25 as along with 1 person genocad
	Engineering RNA Logic with Synthetic Splicing Ribozymes [My Copy] (September 2008) by Austin J. Che posted to syntheticbiology ribozyme by austin on 2009-11-07 20:50:44 as
	Gene network shaping of inherent noise spectra. [My Copy] Nature, Vol. 439, No. 7076. (2 February 2006), pp. 608-611. by D. W. Austin, M. S. Allen, J. M. McCollum, et al.R. D. Dar, J. R. Wilgus, G. S. Sayler, N. F. Samatova, C. D. Cox, M. L. Simpson posted to noise by austin on 2009-11-03 16:22:10 as along with 6 people and 1 group sjayanthi okarsligil madhadron balabu margaritis dylanwalker Bioinformatics
	DNA-catalyzed sequence-specific hydrolysis of DNA. [My Copy] Nature chemical biology (16 August 2009) by Madhavaiah Chandra, Amit Sachdeva, Scott K. Silverman posted to deoxyribozyme by austin on 2009-08-28 23:02:46 as
	Automated unrestricted multigene recombineering for multiprotein complex production [My Copy] Nature Methods, Vol. 6, No. 6. (03 May 2009), pp. 447-450. by Christoph Bieniossek, Yan Nie, Daniel Frey, et al.Natacha Olieric, Christiane Schaffitzel, Ian Collinson, Christophe Romier, Philipp Berger, Timothy J. Richmond, Michel O. Steinmetz, Imre Berger posted to assembly dna by austin on 2009-08-06 16:22:26 as along with 3 people dbikard zwang guhjy
	The second wave of synthetic biology: from modules to systems [My Copy] Nat Rev Mol Cell Biol, Vol. 10, No. 6. (01 June 2009), pp. 410-422. by Priscilla E. M. Purnick, Ron Weiss posted to review syntheticbiology by austin on 2009-07-31 01:50:36 as along with 8 people pablocarb abhishek_tiwari zwang Vincent_Rouilly druvus boko4ikameto aalibes phoenixzxl
	A Synthetic Genetic Edge Detection Program [My Copy] Cell, Vol. 137, No. 7. (26 June 2009), pp. 1272-1281. by Jeffrey J. Tabor, Howard M. Salis, Zachary B. Simpson, et al.Aaron A. Chevalier, Anselm Levskaya, Edward M. Marcotte, Christopher A. Voigt, Andrew D. Ellington posted to light syntheticbiology by austin on 2009-07-31 01:50:22 as along with 2 people and 1 group pablocarb dbikard Synthetic Biology
	Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (14 July 2009) by André Estévez-Torres, Cécile Crozatier, Antoine Diguet, et al.Tomoaki Hara, Hirohide Saito, Kenichi Yoshikawa, Damien Baigl posted to control light by austin on 2009-07-26 00:06:56 as along with 2 people dbikard jec105
	A programming language for composable DNA circuits [My Copy] Journal of The Royal Society Interface, Vol. 6, No. Suppl 4. (6 August 2009), pp. S419-S436. by Andrew Phillips, Luca Cardelli posted to dna language by austin on 2009-06-21 03:52:23 as along with 1 person jonathancooper

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ribozyme	159
rna	98
syntheticbiology	96
tetrahymena	73
groupi	52
folding	36
structure	28
biochemistry	27
review	24
mutagenesis	21
dna	20
trans-splicing	16
design	13
reporter	13
selection	13
website	12
assembly	11
groupii	11
noise	11
recombination	11
repair	11
splicing	11
aptamer	10
pseudoknot	10
prediction	9
control	8
expression	8
helicase	8
circuit	7
evolution	7
excision	7
gene	7
invitro	7
parts	7
regulation	7
riboswitch	7
codon	6
crystal	6
gfp	6
ligase	6
malachitegreen	6
measurement	6
networks	6
secondary	6
switch	6
activation	5
amplification	5
chaperone	5
cloning	5
enzyme	5
fluorescence	5
kinetics	5
protein	5
protocol	5
sequencing	5
synthesis	5
abstraction	4
azoarcus	4
bias	4
coli	4
detection	4
ecoli	4
efficiency	4
engineering	4
genetherapy	4
genome	4
glycosylase	4
hfq	4
intron	4
kinefold	4
logic	4
metabolic	4
mismatch	4
modeling	4
rca	4
restriction	4
riboregulator	4
singlemolecule	4
split	4
transcription	4
translation	4
trna	4
antisense	3
cancer	3
database	3
degradation	3
deoxyribozyme	3
excellent	3
fluorescent	3
geneticcode	3
igs	3
in	3
kinetictrap	3
library	3
light	3
linear	3
modularity	3
nicking	3
phage	3
plasmid	3
pna	3
promoter	3
quantification	3
quorum	3
replication	3
rnasep	3
sensor	3
sequence	3
stability	3
stochastic	3
stpa	3
templiphi	3
useful	3
vitro	3
zincfinger	3
accessibility	2
aminoacids	2
automation	2
bistability	2
catalysis	2
commentary	2
conserved	2
copynumber	2
dsra	2
endonuclease	2
erythromycin	2
gates	2
gateway	2
genomics	2
hairpin	2
hammerhead	2
initiation	2
lactococcus	2
ligation	2
memory	2
metabolic_engineering	2
method	2
microarray	2
microfluidics	2
minimal	2
model	2
modular	2
molecule	2
mutation	2
n15	2
neat	2
oscillation	2
pcr	2
perspective	2
polymerase	2
rewiring	2
rnarna	2
robustness	2
sfold	2
signal	2
single	2
ssra	2
tag	2
td	2
tdt	2
therapy	2
thesis	2
transcriptional	2
transduction	2
yeast	2
activator	1
adp1	1
aging	1
alignment	1
alteration	1
a-minor	1
annealing	1
asymmetric	1
bacillus	1
bacterial	1
base	1
binding	1
biofuel	1
biomaterial	1
bioreactor	1
blunt_ligation	1
cad	1
cell_cycle	1
chemical	1
clpxp	1
code	1
codons	1
comparison	1
compartmentalization	1
complementation	1
complexity	1
cooperative	1
correlation	1
counter	1
crosstalk	1
dbpa	1
delivery	1
digital	1
dimerization	1
directed	1
discovery	1
division	1
dnazyme	1
dynamics	1
emulsion	1
equitans	1
essential	1
extracellular	1
feedback	1
feedback-loop	1
functional	1
gaaa	1
gate	1
generation	1
genetic	1
genomes	1
gnra	1
grammar	1
halflife	1
hda	1
hok	1
homingendonuclease	1
human	1
hypoxia	1
iii	1
inducible	1
industrial	1
interesting	1
invasin	1
invasion	1
inverse	1
kinetic	1
kinfold	1
labeling	1
laci	1
lacz	1
lambda	1
language	1
ligand-dna	1
logos	1
lux	1
machine_learning	1
magnetic	1
mapping	1
matrix	1
mcherry	1
media	1
memristor	1
meta	1
mig	1
modified	1
molecular	1
motif	1
movie	1
mri	1
multidrug	1
mutations	1
mycoplasma	1
nanoarchaeum	1
nitrogen_cycle	1
nmt1	1
nucleic_acid_structures	1
nucleotides	1
oligo	1
optimization	1
orthogonality	1
oscillator	1
oxys	1
p1	1
partsregistry	1
pathway	1
pathways	1
pesudoknot	1
phosphate	1
plant	1
polio	1
polymorphism	1
pops	1
pristinamycin	1
processes	1
procrastination	1
proteins	1
proteorhodopsin	1
purification	1
rational	1
rbs	1
recognition	1
reduction	1
research	1
reverse	1
rfam	1
rfp	1
risk	1
rnaseiii	1
rules	1
s1	1
scanning	1
scheduling	1
sensing	1
sequencelogo	1
shrna	1
sickle	1
signaling	1
signals	1
slic	1
snp	1
software	1
sok	1
spec	1
specific	1
specificity	1
spectroscopy	1
spliceosome	1
splicesome	1
srna	1
stochasticity	1
strand	1
subtilis	1
suicide	1
switches	1
symmetry	1
systems	1
t7	1
targeting	1
tdg	1
telomere	1
temperature	1
tetracycline	1
tetraloop	1
tetrayhmena	1
theophylline	1
therapeutic	1
thermometers	1
tis	1
tpp	1
trans	1
trans-acting	1
transcriptase	1
transfer	1
transformation	1
transposon	1
twin	1
unnatural	1
usage	1
vaccine	1
viennarna	1
virus	1
visualization	1
wo	1

austin's library 1175 articles Export

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