aviad_work's library 137 articles Export

	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to no-tag by aviad_work on 2009-09-24 15:22:56 as along with 17 people and 1 group Zephyrus ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo jfr guhjy tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
	NCBI GEO: mining tens of millions of expression profilesdatabase and tools update [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D760-D765. by Barrett, Tanya, Troup, et al.B. Dennis, Wilhite, E. Stephen, Ledoux, Pierre, Rudnev, Dmitry, Evangelista, Carlos, Kim, F. Irene, Soboleva, Alexandra, Tomashevsky, Maxim, Edgar, Ron posted to dataset expression_data geo ncbi by aviad_work on 2009-05-26 01:48:03 as along with 5 people frohike Borelli akastrin giovenko minostro
	The cancer genome [My Copy] Nature, Vol. 458, No. 7239. (9 April 2009), pp. 719-724. by Michael R. Stratton, Peter J. Campbell, P. Andrew Futreal posted to cancer nature review by aviad_work on 2009-05-26 01:47:35 as along with 12 people and 1 group jfr suizifish guhjy jessopher ilyashl frohike pkonings reyez Zephyrus rdiaz renatomilani kristen Roswell Cancer Crosstalk
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to enrichment genesets gsea pathway-analysis review by aviad_work on 2009-04-14 22:51:03 as along with 15 people and 1 group srp33 vingron dipenps shikin arjun_citeulike guhjy pk506 thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	On testing the significance of sets of genes [My Copy] (4 Sep 2007) by Bradley Efron, Robert Tibshirani posted to enrichment genesets gsea pathways statistics by aviad_work on 2009-04-14 22:49:40 as
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to cancer pathway-analysis by aviad_work on 2009-04-14 22:28:34 as along with 6 people bertelsen ptrobajo wei ipark-kaist bootsy jfr
	Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e108-116. by Elena Edelman, Alessandro Porrello, Justin Guinney, et al.Bala Balakumaran, Andrea Bild, Phillip G. Febbo, Sayan Mukherjee posted to enrichment expression_data gsea pathway-analysis pathways by aviad_work on 2009-04-14 22:27:38 as along with 9 people and 1 group ipark-kaist guhjy ptrobajo dragonrez jfr frohike heliopais barriot srp33 Bioinformatics
	Powerful goodness-of-fit tests based on the likelihood ratio [My Copy] Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 64, No. 2. (2002), pp. 281-294. by Jin Zhang posted to goodness-of-fit likelihood_ratio statistics by aviad_work on 2009-04-03 22:23:13 as
	Using GOstats to test gene lists for GO term association [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 257-258. by S. Falcon, R. Gentleman posted to enrichment go gostats package r by aviad_work on 2009-03-20 20:38:15 as along with 7 people srp33 heliopais jfr jandot guhjy macavity1g mcgannd
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to breast cancer classification metastasis by aviad_work on 2009-03-13 15:18:32 as along with 29 people and 4 groups yaredo fesousa ipark-kaist AbnerCYH zufar provero jmuhlich Zephyrus ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Complex Networks Jarman Lab Bioinformatics GeneGo
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to enrichment_analysis pathway-analysis by aviad_work on 2009-03-04 19:17:49 as along with 41 people and 2 groups ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Stew inesdesantiago heliopais AlexanderPico ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell Bioinformatics - CRUK ConklinLab
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted to class_discovery gene_expression pathway-analysis by aviad_work on 2009-03-04 17:55:54 as along with 13 people rschulz isimpson yaredo frohike ipark-kaist jfr ajbattle zufar carlk renatomilani dragonrez tmmurali ptrobajo
	Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach. [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1607-1615. by V. Pihur, S. Datta, S. Datta posted to cluster_validation by aviad_work on 2009-03-04 17:49:52 as along with 2 people fer jfr
	Clustering gene-expression data with repeated measurements [My Copy] Genome Biology, Vol. 4, No. 5. (2003) by Ka Yeung, Mario Medvedovic, Roger Bumgarner posted to clustering gene_expression replicates by aviad_work on 2009-02-27 15:30:47 as along with 1 person and 1 group ghattem SIMR bioinformatics
	A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis [My Copy] Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 631-643. by Alexander Statnikov, Constantin F. Aliferis, Ioannis Tsamardinos, Douglas Hardin, Shawn Levy posted to cancer classification evaluation gene_expression svm by aviad_work on 2009-02-24 16:26:08 as along with 8 people svozil chad_davis archroad dimatura kallberg srp33 slevy03 vmsr
	Improving gene set analysis of microarray data by SAM-GS [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 242. by Irina Dinu, John Potter, Thomas Mueller, et al.Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui posted to gene_expression gsea sam by aviad_work on 2009-02-19 18:00:50 as along with 12 people and 1 group tonamswish aramesh2 zufar jfr ealloza shigepong ghattem GeeSharpMinor waghsk LuigiAugugliaro heliopais renatomilani BioinfoCIPF
	A modular approach for integrative analysis of large-scale gene-expression and drug-response data [My Copy] Nat Biotech, Vol. 26, No. 5. (08 May 2008), pp. 531-539. by Zoltan Kutalik, Jacques S. Beckmann, Sven Bergmann posted to gene_expression integration isa pingpong by aviad_work on 2009-02-11 19:30:09 as along with 9 people TRHvidsten vingron mingzhi guhjy jfr stringertheory tmmurali oelemento ptrobajo
	Statistical significance for genomewide studies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445. by John D. Storey, Robert Tibshirani posted to fdr genomewide multiple_hypotheses q-value statistics by aviad_work on 2009-01-29 20:05:55 as along with 34 people and 2 groups jperkins arider1 ilyashl icecrown bertelsen jbhiatt biomcgary daforerog treangen druvus vertikalist maximilianh diging_data egreenfest guhjy textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack BTS-PT-AS-CS Bioinformatics
	Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (2000), pp. 9834-9839. by Mei-Ling T. Lee, Frank C. Kuo, G. A. Whitmore, Jeffrey Sklar posted to gene_expression microarray replicates statistics by aviad_work on 2009-01-21 17:23:42 as
	Comparison of various statistical methods for identifying differential gene expression in replicated microarray data [My Copy] Statistical Methods in Medical Research, Vol. 15, No. 1. (February 2006), pp. 3-20. by Seo Y. Kim, Jae W. Lee, In S. Sohn posted to gene_expression microarray replicates statistics by aviad_work on 2009-01-21 17:18:02 as
	Genomics Identifies Medulloblastoma Subgroups That Are Enriched for Specific Genetic Alterations [My Copy] J Clin Oncol, Vol. 24, No. 12. (20 April 2006), pp. 1924-1931. by Margaret C. Thompson, Christine Fuller, Twala L. Hogg, et al.James Dalton, David Finkelstein, Ching C. Lau, Murali Chintagumpala, Adekunle Adesina, David M. Ashley, Stewart J. Kellie, Michael D. Taylor, Tom Curran, Amar Gajjar, Richard J. Gilbertson posted to medulloblastoma by aviad_work on 2009-01-08 21:23:12 as
	Prediction of cancer outcome with microarrays: a multiple random validation strategy. [My Copy] Lancet, Vol. 365, No. 9458. (11 February 2005), pp. 488-492. by Stefan Michiels, Serge Koscielny, Catherine Hill posted to gene_expression outcome prediction prognosis validation by aviad_work on 2009-01-08 17:18:36 as along with 9 people and 1 group ptrobajo srp33 frohike setar textoris jfr chad_davis giovanni winterschlaefer GeschwindLab
	Subclass mapping: identifying common subtypes in independent disease data sets. [My Copy] PLoS ONE, Vol. 2, No. 11. (2007) by Y. Hoshida, J. P. Brunet, P. Tamayo, T. R. Golub, J. P. Mesirov posted to gsea mapping subclass by aviad_work on 2009-01-06 20:50:26 as along with 2 people laral jfr
	Finding regulatory modules through large-scale gene-expression data analysis [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1172-1179. by M. Kloster, C. Tang, N. S. Wingreen posted to bi-clustering gene_expression isa pisa by aviad_work on 2009-01-05 22:15:16 as along with 1 person tvdbulck
	Challenges and prospects in the analysis of large-scale gene expression data [My Copy] Brief Bioinform, Vol. 5, No. 4. (1 January 2004), pp. 313-327. by Jan H. Ihmels, Sven Bergmann posted to bi-clustering gene_expression review by aviad_work on 2009-01-05 21:54:46 as
	Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks. [My Copy] J Mol Biol, Vol. 360, No. 1. (30 June 2006), pp. 204-212. by S. Balaji, L. M. Iyer, L. Aravind, M. M. Babu posted to networks regulatory statistics systems by aviad_work on 2008-12-18 15:21:11 as along with 4 people behindtherabbit kaarsinogen mmt koller
	Defining transcription modules using large-scale gene expression data. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 1993-2003. by J. Ihmels, S. Bergmann, N. Barkai posted to bi-clustering gene_expression by aviad_work on 2008-12-17 20:51:13 as along with 5 people and 3 groups marcius adepace natstreet tvdbulck siebert EisenLab BioinfoCIPF SGU-CIPF
	Gene module level analysis: identification to networks and dynamics [My Copy] Current Opinion in Biotechnology, Vol. 19, No. 5. (October 2008), pp. 482-491. by X. Wang, E. Dalkic, M. Wu, C. Chan posted to modules networks by aviad_work on 2008-12-15 23:04:25 as along with 1 person pengchy
	Understanding biological functions through molecular networks [My Copy] Cell Res, Vol. 18, No. 2. (0000), pp. 224-237. by Jing-Dong J. Han posted to networks review by aviad_work on 2008-12-15 23:03:14 as along with 10 people and 1 group rdiaz cmmorel cabbagezs jo_davies shikin mingzhi giorgiofotia maralena phoenixzxl guhjy GeneGo
	Current approaches to gene regulatory network modelling [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S9. by Thomas Schlitt, Alvis Brazma posted to modelling networks regulatory review by aviad_work on 2008-12-15 23:00:55 as along with 7 people antonkratz Borelli kengg shigepong ramakris nicholasflann bertelsen
	Eigengene networks for studying the relationships between co-expression modules [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Peter Langfelder, Steve Horvath posted to modules networks by aviad_work on 2008-12-15 22:59:51 as along with 6 people tonamswish ptrobajo druvus isimpson jfr AlexanderPico
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences (17 June 2008) by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to inference modelling networks by aviad_work on 2008-12-15 22:58:43 as along with 1 person cswinburne
	Cell-signalling dynamics in time and space [My Copy] Nat Rev Mol Cell Biol, Vol. 7, No. 3. (15 March 2006), pp. 165-176. by Boris N. Kholodenko posted to modelling networks review signaling by aviad_work on 2008-12-15 22:56:43 as along with 8 people and 1 group cmetzner fierykylin mhellmann agonzale julius balabu rmk karfunkel SysbioMPI-TCells
	Modelling and analysis of gene regulatory networks [My Copy] Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780. by Guy Karlebach, Ron Shamir posted to networks regulatory review by aviad_work on 2008-12-15 22:55:26 as along with 14 people antonkratz agonzale cannin tklee kaarsinogen thomaskelder fgibson druvus balicea brianb nedwards dakelley guhjy tmmurali
	An efficient method for the detection and elimination of systematic error in high-throughput screening. [My Copy] Bioinformatics (4 May 2007) by Vladimir Makarenkov, Pablo Zentilli, Dmytro Kevorkov, Andrei Gagarin, Nathalie Malo, Robert Nadon posted to screening statistics by aviad_work on 2008-12-15 20:06:06 as along with 1 person guhjy
	Statistical practice in high-throughput screening data analysis. [My Copy] Nature biotechnology, Vol. 24, No. 2. (07 February 2006), pp. 167-175. by Nathalie Malo, James A. Hanley, Sonia Cerquozzi, Jerry Pelletier, Robert Nadon posted to rnai screening statistics by aviad_work on 2008-12-15 20:01:50 as along with 6 people and 2 groups jerome Yanno Ayest lujiec cckan rmk Bioinformatics ThinkBridge
	Hit selection with false discovery rate control in genome-scale RNAi screens. [My Copy] Nucleic acids research, Vol. 36, No. 14. (August 2008), pp. 4667-4679. by X. D. Zhang, P. F. Kuan, M. Ferrer, et al.X. Shu, Y. C. Liu, A. T. Gates, P. Kunapuli, E. M. Stec, M. Xu, S. D. Marine, D. J. Holder, B. Strulovici, J. F. Heyse, A. S. Espeseth posted to rnai by aviad_work on 2008-12-15 19:53:33 as along with 3 people paszkows aramesh2 guhjy
	A probability-based approach for the analysis of large-scale RNAi screens [My Copy] Nature Methods, Vol. 4, No. 10. (09 September 2007), pp. 847-849. by Renate König, Chih-Yuan Chiang, Buu P. Tu, et al.Frank S. Yan, Paul D. Dejesus, Angelica Romero, Tobias Bergauer, Anthony Orth, Ute Krueger, Yingyao Zhou, Sumit K. Chanda posted to rnai by aviad_work on 2008-12-15 19:52:32 as along with 2 people guhjy mtagaya
	Predicting survival from microarray data - a comparative study. [My Copy] Bioinformatics (6 June 2007) by H M M. Bøvelstad, S Nygård, H L L. Størvold, et al.M Aldrin, O Borgan, A Frigessi, O C C. Lingjærde posted to comparison microarray outcome prediction by aviad_work on 2008-12-12 20:02:18 as along with 6 people ekotelnikova jfr frohike rdiaz shigepong blackm0k
	Machine Learning and Its Applications to Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007), e116. by Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Drăghici posted to machine_learning review by aviad_work on 2008-12-11 16:20:15 as along with 14 people and 3 groups colm rwst winterschlaefer svozil druvus giovenko Borelli skhadar julius cjeans asddd ciga nklee kmdaily Bioinformatics SysbioMPI-TCells Computational_Information_Geometry
	Mapping normal and cancer cell signalling networks: towards single-cell proteomics [My Copy] Nat Rev Cancer, Vol. 6, No. 2. (February 2006), pp. 146-155. by Jonathan M. Irish, Nikesh Kotecha, Garry P. Nolan posted to networks proteomics signaling by aviad_work on 2008-12-11 16:16:22 as along with 1 person and 1 group julius SysbioMPI-TCells
	Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by X. Zhang, X. Lu, Q. Shi, et al.X. Q. Xu, H. C. Leung, L. N. Harris, J. D. Iglehart, A. Miron, J. S. Liu, W. H. Wong posted to feature_selection microarray_analysis svm by aviad_work on 2008-12-03 21:17:44 as along with 5 people and 1 group xuzhe83 chad_davis sdvillal bundschu jianrong generif_paper
	Key issues in conducting a meta-analysis of gene expression microarray datasets. [My Copy] PLoS medicine, Vol. 5, No. 9. (30 September 2008), e184. by Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman posted to meta-analysis microarray by aviad_work on 2008-12-01 18:47:00 as along with 11 people and 1 group zufar greg frohike lwaldron daforerog Zephyrus shikin druvus guhjy jfr ptrobajo Roswell Cancer Crosstalk
	Tight Clustering: A Resampling-Based Approach for Identifying Stable and Tight Patterns in Data [My Copy] Biometrics, Vol. 61, No. 1. (March 2005), pp. 10-16. by George C. Tseng, Wing H. Wong posted to clustering resampling by aviad_work on 2008-12-01 15:02:56 as along with 1 person jfr
	Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529. by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A. Lauffenburger, Garry P. Nolan posted to bayesian_networks by aviad_work on 2008-11-24 17:26:48 as along with 23 people and 1 group pkm phoenixzxl sameersoi abhishek_tiwari poirel roys frohike czeller emptyhb kentsis kaarsinogen balajis rand_bayes ryang wnpx os252 j3xucite noano koller jhatrimatri cdppublications lp2 saman_vp CDP
	A Primer on Learning in Bayesian Networks for Computational Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (31 August 2007), e129. by Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead posted to bayesian_networks machine_learning by aviad_work on 2008-11-19 22:05:14 as along with 17 people and 1 group colm abhishek_tiwari kshameer tonamswish Borelli toerst druvus giovenko jo_davies balicea macle GeeSharpMinor firoozye sobolevnrm bmaust kmdaily schelhorn baker-group
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted to gsea by aviad_work on 2008-11-06 21:26:02 as along with 12 people and 1 group ptrobajo guhjy tonamswish ipark-kaist jfr ihpark ealloza djkt waghsk heliopais giovenko magusina BioinfoCIPF
	Gene set enrichment analysis using linear models and diagnostics. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 22. (15 November 2008), pp. 2586-2591. by A. P. Oron, Z. Jiang, R. Gentleman posted to gsea linear_models by aviad_work on 2008-11-05 23:21:45 as along with 8 people jfr rdiaz guhjy sg45653 natstreet druvus giovenko aconesa
	Diagnosis of multiple cancer types by shrunken centroids of gene expression [My Copy] PNAS, Vol. 99, No. 10. (14 May 2002), pp. 6567-6572. by Robert Tibshirani, Trevor Hastie, Balasubramanian Narasimhan, Gilbert Chu posted to centroids classification gene_expression gene_selection shrunken by aviad_work on 2008-10-28 13:17:29 as along with 9 people and 1 group akastrin daed kliger jfr archroad giovanni frohike GeeSharpMinor jjrodriguez GeschwindLab
	Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. [My Copy] Cancer cell, Vol. 1, No. 2. (March 2002), pp. 133-143. by E. J. Yeoh, M. E. Ross, S. A. Shurtleff, et al.W. K. Williams, D. Patel, R. Mahfouz, F. G. Behm, S. C. Raimondi, M. V. Relling, A. Patel, C. Cheng, D. Campana, D. Wilkins, X. Zhou, J. Li, H. Liu, C. H. Pui, W. E. Evans, C. Naeve, L. Wong, J. R. Downing posted to cancer cluster_discovery dataset expression_data leukemia by aviad_work on 2008-09-23 22:34:29 as

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gene_expression	29
clustering	25
cancer	22
review	14
microarray	13
statistics	13
nmf	12
classification	11
medulloblastoma	10
microarray_analysis	10
networks	10
pathways	9
gsea	8
ml	8
expression_data	7
outcome	7
pathway-analysis	6
prediction	5
validation	5
bi-clustering	4
dataset	4
enrichment	4
evaluation	4
regulatory	4
stability	4
tutorial	4
cluster_validation	3
gene_selection	3
machine_learning	3
modelling	3
modules	3
prognosis	3
replicates	3
rnai	3
bayesian_networks	2
breast	2
broad	2
class_discovery	2
comparison	2
copy_number_alterations	2
databases	2
differential_genes	2
dimensionality_reduction	2
event_log_analysis	2
events_analysis	2
feature_selection	2
genesets	2
isa	2
lda	2
normalization	2
number_of_clusters	2
package	2
pattern_recognition	2
pca	2
r	2
resampling	2
sample_size	2
screening	2
signaling	2
snp	2
svm	2
acgh	1
bioinformatics	1
biomarker	1
bootstrap	1
cdna	1
centroids	1
classigication	1
clinical	1
clinical_predictors	1
cluster_discovery	1
cmyc	1
consensus	1
control	1
cope	1
cophenetic_coefficient	1
copy_number	1
correlation	1
cross-validation	1
curve	1
data	1
datamining	1
desmoplastic	1
edit_distance	1
enrichment_analysis	1
factorization	1
fdr	1
feature_extraction	1
genes	1
genomewide	1
genomic	1
genomics	1
geo	1
go	1
goodness-of-fit	1
gostats	1
graph-based	1
hierarchical	1
high_dimensional	1
hubert	1
inference	1
integration	1
leukemia	1
library	1
likelihood_ratio	1
linear_models	1
lung	1
mapping	1
matrix_factorization	1
medullo	1
meta-analysis	1
metagene	1
metagenes	1
metastasis	1
mirna	1
module_networks	1
molecular_biology	1
multiple_hypotheses	1
nature	1
ncbi	1
nips2006	1
nsnmf	1
p53	1
pathogenesis	1
pingpong	1
pisa	1
pitfalls	1
proteomics	1
quality	1
q-value	1
rma	1
roc	1
sam	1
segmentation	1
shrunken	1
software	1
sparse	1
src	1
stroma	1
subclass	1
subsystem_identification	1
survey	1
systems	1
therapeutic	1
validity	1
wnt_pathway	1

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