PatternHunter II: highly sensitive and fast homology search. Export

@article{citeulike:332261, abstract = {Extending the single optimized spaced seed of PatternHunter to multiple ones, PatternHunter II simultaneously remedies the lack of sensitivity of Blastn and the lack of speed of Smith-Waterman, for homology search. At Blastn speed, PatternHunter II approaches Smith-Waterman sensitivity, bringing homology search technology back to a full circle.}, address = {Dept. Computer Science, Univ. of Waterloo, Waterloo, ON, Canada N2L 3G1. mli@uwaterloo.ca}, author = {Li, Ming and Ma, Bin and Kisman, Derek and Tromp, John}, citeulike-article-id = {332261}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/15706531}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=15706531}, issn = {0919-9454}, journal = {Genome informatics. International Conference on Genome Informatics}, keywords = {2gst, alignment, mapped\_assembly, ngst}, pages = {164--175}, posted-at = {2009-09-01 02:58:30}, priority = {2}, title = {PatternHunter II: highly sensitive and fast homology search.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/15706531}, volume = {14}, year = {2003} }

TY - JOUR ID - citeulike:332261 L3 - citeulike-article-id:332261 N2 - Extending the single optimized spaced seed of PatternHunter to multiple ones, PatternHunter II simultaneously remedies the lack of sensitivity of Blastn and the lack of speed of Smith-Waterman, for homology search. At Blastn speed, PatternHunter II approaches Smith-Waterman sensitivity, bringing homology search technology back to a full circle. JF - Genome informatics. International Conference on Genome Informatics SN - 0919-9454 AD - Dept. Computer Science, Univ. of Waterloo, Waterloo, ON, Canada N2L 3G1. mli@uwaterloo.ca EP - 175 TI - PatternHunter II: highly sensitive and fast homology search. VL - 14 SP - 164 KW - 2gst KW - alignment KW - mapped_assembly KW - ngst AU - Li, Ming AU - Ma, Bin AU - Kisman, Derek AU - Tromp, John PY - 2003/// UR - http://view.ncbi.nlm.nih.gov/pubmed/15706531 ER -