azazello's prok-seq-cg-pipeline [67 articles] Export

Recent papers added to azazello's library classified by the tag prok-seq-cg-pipeline. You can also see everyone's prok-seq-cg-pipeline.

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	Comparative genomics identifies the genetic islands that distinguish Neisseria meningitidis, the agent of cerebrospinal meningitis, from other Neisseria species. [My Copy] Infection and immunity, Vol. 70, No. 12. (1 December 2002), pp. 7063-7072. by Agnès Perrin, Stéphane Bonacorsi, Etienne Carbonnelle, et al.Driss Talibi, Philippe Dessen, Xavier Nassif, Colin Tinsley posted to prok-seq-cg-pipeline by azazello on 2009-11-24 19:39:50 as along with 1 person treangen
	Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes. [My Copy] Microbiology (Reading, England), Vol. 152, No. Pt 12. (1 December 2006), pp. 3733-3749. by Julie Dunning C. Hotopp, Renata Grifantini, Nikhil Kumar, et al.Yih Ling L. Tzeng, Derrick Fouts, Elisabetta Frigimelica, Monia Draghi, Marzia Monica M. Giuliani, Rino Rappuoli, David S. Stephens, Guido Grandi, Hervé Tettelin posted to prok-seq-cg-pipeline by azazello on 2009-11-24 19:37:37 as along with 3 people and 1 group disrael treangen tpreeprem gatech-compgenomics
	The Influence of Mutation, Recombination, Population History, and Selection on Patterns of Genetic Diversity in Neisseria meningitidis [My Copy] Mol Biol Evol, Vol. 22, No. 3. (1 March 2005), pp. 562-569. by K. A. Jolley, D. J. Wilson, P. Kriz, G. Mcvean, M. C. J. Maiden posted to prok-seq-cg-pipeline by azazello on 2009-11-24 18:49:22 as along with 3 people katholt treangen vplagnol
	Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1 [My Copy] Journal of Molecular Biology, Vol. 305, No. 3. (19 January 2001), pp. 567-580. by Anders Krogh, Björn Larsson, Gunnar von Heijne, Erik L. L. Sonnhammer posted to prok-seq-cg-pipeline by azazello on 2009-11-03 20:16:03 as along with 11 people tfuji niallhaslam katholt thaliana bjorns andreasauerwein j3xucite happy_manatee massivemayhem twenta sebk
	InterPro and InterProScan: Tools for Protein Sequence Classification and Comparison. [My Copy] Methods Mol Biol, Vol. 396 (2007), pp. 59-70. by N. Mulder, R. Apweiler posted to prok-seq-cg-pipeline by azazello on 2009-11-03 20:01:39 as along with 2 people druvus DNAReplication
	The Universal Protein Resource (UniProt) 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D169-174. by Uniprot-Consortium posted to prok-seq-cg-pipeline by azazello on 2009-11-03 20:00:19 as along with 12 people saunders barmak7282 badi MarcoAlvarez tfuji nedwards niallhaslam bicko gjuggler lptolik coela sjcockell
	The Universal Protein Resource (UniProt) in 2010 [My Copy] Nucl. Acids Res. (20 October 2009), gkp846. by The UniProt Consortium posted to prok-seq-cg-pipeline by azazello on 2009-11-03 19:59:15 as along with 1 person sf11
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to prok-seq-cg-pipeline by azazello on 2009-10-28 04:47:18 as along with 10 people and 1 group djkt n00c dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	Minimus: a fast, lightweight genome assembler. [My Copy] BMC bioinformatics, Vol. 8 (26 February 2007), 64. by Daniel D. Sommer, Arthur L. Delcher, Steven L. Salzberg, Mihai Pop posted to prok-seq-cg-pipeline by azazello on 2009-10-28 02:45:13 as along with 3 people Neeperando Thaverkamp eckart_bindewald
	CAMERA: A Community Resource for Metagenomics [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007), e75. by Rekha Seshadri, Saul A. Kravitz, Larry Smarr, Paul Gilna, Marvin Frazier posted to prok-seq-cg-pipeline by azazello on 2009-10-28 02:30:14 as along with 6 people and 1 group houniao007 idoerg eweaver jdelcampo beatrizfernandez AlexanderPico Microbial-Ecology
	The RAST Server: rapid annotations using subsystems technology. [My Copy] BMC genomics, Vol. 9, No. 1. (08 February 2008), 75. by Ramy K. Aziz, Daniela Bartels, Aaron A. Best, et al.Matthew DeJongh, Terrence Disz, Robert A. Edwards, Kevin Formsma, Svetlana Gerdes, Elizabeth M. Glass, Michael Kubal, Folker Meyer, Gary J. Olsen, Robert Olson, Andrei L. Osterman, Ross A. Overbeek, Leslie K. McNeil, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D. Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, Olga Zagnitko posted to prok-seq-cg-pipeline by azazello on 2009-10-28 02:26:59 as along with 8 people and 1 group sgoetz stefanorb coela Thaverkamp barriot druvus JeremyZucker klager MetabolicModeling
	The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions [My Copy] Nucl. Acids Res. (12 October 2007), gkm846. by Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, et al.Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia N. Ivanova, Nikos C. Kyrpides posted to prok-seq-cg-pipeline by azazello on 2009-10-28 02:22:28 as along with 3 people nlapalu druvus tbudnik
	Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. [My Copy] Science (New York, N.Y.), Vol. 269, No. 5223. (28 July 1995), pp. 496-512. by R. D. Fleischmann, M. D. Adams, O. White, et al.R. A. Clayton, E. F. Kirkness, A. R. Kerlavage, C. J. Bult, J. F. Tomb, B. A. Dougherty, J. M. Merrick posted to prok-seq-cg-pipeline by azazello on 2009-10-27 20:36:02 as along with 7 people rshe katholt johanviklund Cortel dgront treangen hsekiguc
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to prok-seq-cg-pipeline by azazello on 2009-10-26 18:33:39 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Reordering contigs of draft genomes using the Mauve Aligner [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2071-2073. by Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna posted to prok-seq-cg-pipeline by azazello on 2009-10-26 18:14:30 as along with 2 people and 1 group natstreet druvus Journal picks
	Prediction of lipoprotein signal peptides in Gram-negative bacteria. [My Copy] Protein science : a publication of the Protein Society, Vol. 12, No. 8. (1 August 2003), pp. 1652-1662. by Agnieszka S. Juncker, Hanni Willenbrock, Gunnar Von Heijne, Søren Brunak, Henrik Nielsen, Anders Krogh posted to prok-seq-cg-pipeline by azazello on 2009-10-25 20:31:31 as along with 2 people redlemon29 xingxu
	Locating proteins in the cell using TargetP, SignalP and related tools. [My Copy] Nature protocols, Vol. 2, No. 4. (2007), pp. 953-971. by Olof Emanuelsson, Søren Brunak, Gunnar von Heijne, Henrik Nielsen posted to prok-seq-cg-pipeline by azazello on 2009-10-25 20:28:43 as along with 6 people dandaman nlapalu raiyar guhjy ptrobajo mdstobbe
	Improved prediction of signal peptides: SignalP 3.0. [My Copy] Journal of molecular biology, Vol. 340, No. 4. (16 July 2004), pp. 783-795. by Jannick Dyrløv D. Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak posted to prok-seq-cg-pipeline by azazello on 2009-10-25 20:27:14 as along with 10 people BioNica tfuji rpetrenko katholt nedwards kreibich niallhaslam richter80 sebk raiyar
	tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. [My Copy] Nucleic acids research, Vol. 25, No. 5. (1 March 1997), pp. 955-964. by T. M. Lowe, S. R. Eddy posted to prok-seq-cg-pipeline by azazello on 2009-10-25 20:18:19 as along with 12 people and 1 group codonusage tfuji danatcaret gdb ziquje evaf arcticrasta dquest vwchan djkt dandaman timflutre beta
	Improved microbial gene identification with GLIMMER. [My Copy] Nucleic acids research, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641. by A. L. Delcher, D. Harmon, S. Kasif, O. White, S. L. Salzberg posted to prok-seq-cg-pipeline by azazello on 2009-10-25 20:04:36 as along with 8 people rneches tfuji Ayest nedwards ziquje dquest gelack wenhan
	A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case. [My Copy] Nucleic acids research, Vol. 35, No. 12. (9 June 2007), pp. 3953-3962. by G. X. Yu, E. E. Snyder, S. M. Boyle, et al.O. R. Crasta, M. Czar, S. P. Mane, A. Purkayastha, B. Sobral, J. C. Setubal posted to prok-seq-cg-pipeline by azazello on 2009-10-25 19:38:40 as along with 2 people dansullivanblk druvus
	MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. [My Copy] BMC bioinformatics, Vol. 9 (27 November 2008), 498. by Hélène Chiapello, Annie Gendrault, Christophe Caron, Jérome Blum, Marie-Agnès A. Petit, Meriem El Karoui posted to prok-seq-cg-pipeline by azazello on 2009-10-25 19:35:10 as along with 3 people operon treangen druvus
	Annotation, comparison and databases for hundreds of bacterial genomes [My Copy] Research in Microbiology, Vol. 158, No. 10. (December 2007), pp. 724-736. by Claudine Médigue, Ivan Moszer posted to prok-seq-cg-pipeline by azazello on 2009-10-25 19:34:02 as along with 3 people ajsferreira katholt druvus
	DIYA: a bacterial annotation pipeline for any genomics lab [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 962-963. by Andrew C. Stewart, Brian Osborne, Timothy D. Read posted to prok-seq-cg-pipeline by azazello on 2009-10-25 19:33:19 as along with 6 people toszko jamselem robfsouza druvus dswan jmeppley
	Frameshift detection in prokaryotic genomic sequences. [My Copy] International journal of bioinformatics research and applications, Vol. 5, No. 4. (2009), pp. 458-477. by Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky posted to prok-seq-cg-pipeline frameshift my by azazello on 2009-08-09 13:48:23 as along with 1 person druvus
	Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W606-611. by Lee S. Katz, Chris R. Bolen, Brian H. Harcourt, et al.Susanna Schmink, Xin Wang, Andrey Kislyuk, Robert T. Taylor, Leonard W. Mayer, I. King Jordan posted to prok-seq-cg-pipeline my neisseria-hgt by azazello on 2009-08-09 13:47:57 as along with 1 person lskatz
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to prok-seq-cg-pipeline 2gst mapped_assembly scaffolding by azazello on 2009-07-10 12:51:24 as along with 17 people and 5 groups skembel n00c operon michaelbarton Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to prok-seq-cg-pipeline my by azazello on 2009-03-10 00:22:04 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu djkt semrich mhamada
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to prok-seq-cg-pipeline by azazello on 2009-03-06 01:18:44 as along with 38 people and 5 groups n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Comparative bacterial proteomics: analysis of the core genome concept. [My Copy] PloS one, Vol. 3, No. 2. (6 February 2008), e1542. by Stephen J. Callister, Lee Ann A. McCue, Joshua E. Turse, et al.Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton posted to prok-seq-cg-pipeline core-pan by azazello on 2009-03-03 16:55:46 as along with 4 people and 2 groups vikramjind treangen druvus jlgreen Green Lab iSEEM
	Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition [My Copy] Genome Biology, Vol. 8, No. 5. (02 May 2007), R71. by Tristan Lefebure, Michael Stanhope posted to prok-seq-cg-pipeline by azazello on 2009-03-01 17:41:19 as along with 3 people druvus operon rabu
	Multiple genome alignment for identifying the core structure among moderately related microbial genomes [My Copy] BMC Genomics, Vol. 9 (31 October 2008), 515. by Ikuo Uchiyama posted to prok-seq-cg-pipeline by azazello on 2009-03-01 17:40:59 as along with 2 people druvus treangen
	High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000139. by Anjana Srivatsan, Yi Han, Jianlan Peng, et al.Ashley K. Tehranchi, Richard Gibbs, Jue D. Wang, Rui Chen posted to prok-seq-cg-pipeline mgs-nst by azazello on 2009-02-20 13:52:36 as along with 7 people usagi-kirin druvus lewista abizar ojabado reyez caseybrown
	High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi [My Copy] Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993. by Kathryn E. Holt, Julian Parkhill, Camila J. Mazzoni, et al.Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J. Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan posted to prok-seq-cg-pipeline mgs-nst by azazello on 2009-02-20 13:51:02 as along with 10 people felsani usagi-kirin lewista treangen abizar druvus caseybrown pengchy Stew aconesa
	Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. [My Copy] Nucleic Acids Res, Vol. 29, No. 3. (1 February 2001), pp. 774-782. by L. McCue, W. Thompson, C. Carmack, et al.M. P. Ryan, J. S. Liu, V. Derbyshire, C. E. Lawrence posted to prok-seq-cg-pipeline mgs-nst by azazello on 2009-02-20 13:50:15 as along with 4 people and 1 group dquest adepace nklee pradiptaray EisenLab
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, Keira R. Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria C. Catenazzi, Simon Chang, Neil R. Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Fuentes, Scott W. Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, Huw T. A. Jones, Gyoung-Dong Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. Mccauley, Paul Mcnitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee L. Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, Chris D. Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana C. Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie Vandevondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. Mccooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted to prok-seq-cg-pipeline fs-bib mgs-nst by azazello on 2009-02-20 13:48:43 as along with 29 people and 1 group hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt SIMR bioinformatics
	Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome” [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13950-13955. by Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, et al.Claudio Donati, Duccio Medini, Naomi L. Ward, Samuel V. Angiuoli, Jonathan Crabtree, Amanda L. Jones, A. Scott Durkin, Robert T. DeBoy, Tanja M. Davidsen, Marirosa Mora, Maria Scarselli, Margarit, Jeremy D. Peterson, Christopher R. Hauser, Jaideep P. Sundaram, William C. Nelson, Ramana Madupu, Lauren M. Brinkac, Robert J. Dodson, Mary J. Rosovitz, Steven A. Sullivan, Sean C. Daugherty, Daniel H. Haft, Jeremy Selengut, Michelle L. Gwinn, Liwei Zhou, Nikhat Zafar, Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. B. O'Connor, Shannon Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, Claire M. Fraser posted to prok-seq-cg-pipeline mgs-nst core-pan bgo by azazello on 2009-02-17 14:16:59 as along with 4 people and 1 group sharpton nyyu druvus AaronDarling iSEEM
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to prok-seq-cg-pipeline 454 ngst by azazello on 2009-02-11 20:40:52 as along with 17 people and 2 groups GustavoLacerda n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	A large genome center's improvements to the Illumina sequencing system [My Copy] Nature Methods, Vol. 5, No. 12. (25 November 2008), pp. 1005-1010. by Michael A. Quail, Iwanka Kozarewa, Frances Smith, et al.Aylwyn Scally, Philip J. Stephens, Richard Durbin, Harold Swerdlow, Daniel J. Turner posted to prok-seq-cg-pipeline 2gst by azazello on 2009-02-04 19:42:16 as along with 13 people and 1 group seb1 Annab polivares katholt hagechouchin443 sandfire natstreet druvus jfr vmsr clearbluespring jbhiatt caseybrown JLab
	Evolution of competence and DNA uptake specificity in the Pasteurellaceae [My Copy] BMC Evolutionary Biology, Vol. 6 (12 October 2006), 82. by Rosemary J. Redfield, Wendy A. Findlay, Janine Bosse, Simon J. Kroll, Andrew D. S. Cameron, John H. E. Nash posted to prok-seq-cg-pipeline neisseria-hgt by azazello on 2009-02-04 18:31:51 as along with 2 people treangen martainn
	Biased distribution of DNA uptake sequences towards genome maintenance genes [My Copy] Nucl. Acids Res., Vol. 32, No. 3. (11 February 2004), pp. 1050-1058. by Tonje Davidsen, Einar A. Rodland, Karin Lagesen, Erling Seeberg, Torbjorn Rognes, Tone Tonjum posted to prok-seq-cg-pipeline neisseria-hgt by azazello on 2009-02-04 18:31:00 as along with 1 person treangen
	An intragenic distribution bias of DNA uptake sequences in Pasteurellaceae and Neisseriae [My Copy] Biology Direct, Vol. 3 (27 March 2008), 12. by Mark W. J. van Passel posted to prok-seq-cg-pipeline neisseria-hgt by azazello on 2009-02-04 18:30:39 as
	JIGSAW: integration of multiple sources of evidence for gene prediction. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 18. (15 September 2005), pp. 3596-3603. by Jonathan E. Allen, Steven L. Salzberg posted to prok-seq-cg-pipeline genefinding by azazello on 2009-01-30 19:58:01 as along with 6 people and 1 group rshe GustavoLacerda jmartin49 indigoviolet stajich wenhan EisenLab
	ICDS database: interrupted CoDing sequences in prokaryotic genomes. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by E. Perrodou, C. Deshayes, J. Muller, et al.C. Schaeffer, A. Van Dorsselaer, R. Ripp, O. Poch, J. M. Reyrat, O. Lecompte posted to prok-seq-cg-pipeline frameshift by azazello on 2008-04-11 19:12:09 as along with 1 person alexl
	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to scaffolding qual prok-seq-cg-pipeline mapped_assembly by azazello on 2008-03-25 13:59:11 as along with 13 people and 2 groups rneches foxpowa APRegier ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling mariakmejia druvus Khavkin's lab gatech-compgenomics
	Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 9. (4 March 2008), pp. 3473-3478. by Christoph Schoen, Jochen Blom, Heike Claus, et al.Anja Schramm-GlÃ¼ck, Petra Brandt, Tobias MÃ¼ller, Alexander Goesmann, Biju Joseph, Sebastian Konietzny, Oliver Kurzai, Corinna Schmitt, Torben Friedrich, Burkhard Linke, Ulrich Vogel, Matthias Frosch posted to qual prok-seq-cg-pipeline neisseria-hgt by azazello on 2008-03-24 13:38:46 as along with 2 people and 1 group druvus martainn gatech-compgenomics
	Extending assembly of short DNA sequences to handle error. [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2942-2944. by W. R. Jeck, J. A. Reinhardt, D. A. Baltrus, et al.M. T. Hickenbotham, V. Magrini, E. R. Mardis, J. L. Dangl, C. D. Jones posted to prok-seq-cg-pipeline qual by azazello on 2008-03-19 17:04:31 as along with 6 people idoerg floatingpoint natstreet druvus guhjy Neeperando
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to prok-seq-cg-pipeline qual by azazello on 2008-03-18 00:16:44 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to prok-seq-cg-pipeline qual by azazello on 2008-03-17 23:47:48 as along with 16 people and 2 groups operon n00c robsyme dakelley acn druvus nmohelli natstreet timflutre stajich ghattem GustavoLacerda niallhaslam flexer jwhitney iris42 DeNovoAssembly-SIMR Mycology
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to prok-seq-cg-pipeline qual by azazello on 2008-03-17 23:47:33 as along with 12 people and 1 group n00c APRegier jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy nedwards iris42 gatech-compgenomics

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prok-seq-cg-pipeline	67
binning	53
evol-gene-duplicates	43
qual	29
metagenomics	18
mgs-nst	17
crispr	14
mapped_assembly	12
frameshift	6
core-pan	5
neisseria-hgt	5
scaffolding	5
2gst	4
cse	4
fs-bib	4
genefinding	4
my	4
ngst	4
classic	3
454	2
alignment	2
3gst	1
bgo	1
cs	1
est	1
evol-genetics	1
polymorphism	1
wtf	1

azazello's prok-seq-cg-pipeline [67 articles] Export

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