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	Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm [My Copy] Journal of Biomolecular NMR, Vol. 43, No. 2. (1 February 2009), pp. 97-109. by Roland Schmucki, Shigeyuki Yokoyama, Peter Güntert posted to nmr assignment by babakap on 2009-10-24 05:23:31 as along with 1 person lna
	An introduction to kernel-based learning algorithms [My Copy] Neural Networks, IEEE Transactions on, Vol. 12, No. 2. (07 August 2002), pp. 181-201. by K. R. Muller, S. Mika, G. Ratsch, K. Tsuda, B. Scholkopf posted to no-tag by babakap on 2009-01-29 19:54:28 as along with 18 people e120265 esyoun awg2 ckai1 Fujisaki gkvas eddymier vi_z grzegorz bayesian pliz mthomure zoop atbrew kozaki teesid jccaicedo i-stevenson
	Face Recognition Using Laplacianfaces [My Copy] IEEE Trans. Pattern Anal. Mach. Intell., Vol. 27, No. 3. (2005), pp. 328-340. by Xiaofei He, Shuicheng Yan, Yuxiao Hu, P. Niyogi, Hong-Jiang Zhang posted to dimensionlaity-reduction machine-learning by babakap on 2009-01-29 19:53:32 as along with 7 people and 4 groups florianschroff handee Liuftvafas jekky sdvillal zoop mctor CMU-HCII Blog_and_Wiki_Research automatic_summarization ASR
	Optimization by Simulated Annealing [My Copy] Science, Vol. 220 (1983), pp. 671-680. by S. Kirkpatrick, C. D. Gelatt, Jr, M. P. Vecchi posted to tamd by babakap on 2009-01-30 16:44:01 as along with 3 people Inoka eliang Hans45
	Prediction of drug-target interaction networks from the integration of chemical and genomic spaces [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i232-240. by Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa posted to drug by babakap on 2009-01-30 16:00:41 as along with 4 people ruichu zhangzhenjie girschick renatomilani
	A maximum common substructure-based algorithm for searching and predicting drug-like compounds [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i366-374. by Yiqun Cao, Tao Jiang, Thomas Girke posted to drug by babakap on 2009-01-30 15:57:36 as along with 2 people reyez girschick
	Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 3, No. 2. (2006), pp. 98-113. by Wei Chu, Zoubin Ghahramani, Alexei Podtelezhnikov, David L. Wild posted to contactmap proteomics secondary-structure by babakap on 2009-01-29 21:36:06 as
	A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery [My Copy] Research in Computational Molecular Biology (2008), pp. 98-111. by Raluca Gordân, Leelavati Narlikar, Alexander Hartemink posted to ppi systems_biology by babakap on 2009-01-29 21:22:30 as
	Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis [My Copy] Psychometrika, Vol. 29, No. 1. (27 March 1964), pp. 1-27. by J. Kruskal posted to rank by babakap on 2009-01-30 19:59:16 as along with 3 people jmontes dmd qwermish
	Learning Distance Functions using Equivalence Relations [My Copy] In In Proceedings of the Twentieth International Conference on Machine Learning, Vol. 21 (2003), pp. 11-18. by Noam Shental, Daphna Weinshall posted to machine-learning metric-learning by babakap on 2009-01-29 20:11:26 as
	Locally linear metric adaptation for semi-supervised clustering [My Copy] In ICML '04: Proceedings of the twenty-first international conference on Machine learning (2004) by Hong Chang, Dit Y. Yeung posted to machine-learning metric-learning by babakap on 2009-01-29 20:08:52 as
	A Tutorial on Spectral Clustering [My Copy] (1 Nov 2007) by Ulrike von Luxburg posted to no-tag by babakap on 2009-01-29 19:59:58 as along with 11 people theshadowhost travieso ansobol euclid bigbossman kohei-h scorreia_pro Oksana teesid robotact Hoertnagl
	Probability-Based Locally Linear Embedding for Classification [My Copy] In FSKD '07: Proceedings of the Fourth International Conference on Fuzzy Systems and Knowledge Discovery (2007), pp. 243-247. by Zhenyue Zhang, Lingxiao Zhao posted to no-tag by babakap on 2009-11-17 19:00:58 as
	Supervised LLE in ICA Space for Facial Expression Recognition [My Copy] Neural Networks and Brain, 2005. ICNN&B '05. International Conference on, Vol. 3 (15 October 2005), pp. 1970-1975. by Qijun Zhao, D. Zhang, Hongtao Lu posted to no-tag by babakap on 2009-11-17 18:56:38 as
	Locally linear discriminant embedding: An efficient method for face recognition [My Copy] Pattern Recognition, Vol. 41, No. 12. (December 2008), pp. 3813-3821. by B. Li, C. Zheng, D. Huang posted to no-tag by babakap on 2009-11-17 18:28:30 as
	Supervised Locally Linear Embedding [My Copy] Artificial Neural Networks and Neural Information Processing — ICANN/ICONIP 2003 (2003), pp. 175-175. by Dick de Ridder, Olga Kouropteva, Oleg Okun, Matti Pietikäinen, Robert Duin posted to no-tag by babakap on 2009-11-17 17:33:45 as
	Supervised Locally Linear Embedding Algorithm for Pattern Recognition [My Copy] Pattern Recognition and Image Analysis (2003), pp. 386-394. by Olga Kouropteva, Oleg Okun, Matti Pietikäinen posted to no-tag by babakap on 2009-11-17 17:31:41 as
	MUFOLD: A new solution for protein 3D structure prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Jingfen Zhang, Qingguo Wang, Bogdan Barz, et al.Zhiquan He, Ioan Kosztin, Yi Shang, Dong Xu posted to no-tag by babakap on 2009-10-28 01:33:35 as along with 2 people apaydin j3xucite
	De novo protein structure generation from incomplete chemical shift assignments [My Copy] Journal of Biomolecular NMR, Vol. 43, No. 2. (1 February 2009), pp. 63-78. by Yang Shen, Robert Vernon, David Baker, Ad Bax posted to structure nmr by babakap on 2009-10-24 05:24:03 as along with 1 person viktor21614
	Automated protein structure calculation from NMR data [My Copy] Journal of Biomolecular NMR, Vol. 43, No. 3. (1 March 2009), pp. 131-143. by Mike Williamson, C. Craven posted to structure nmr by babakap on 2009-10-24 05:22:10 as along with 1 person lna
	CSSI-PRO: a method for secondary structure type editing, assignment and estimation in proteins using linear combination of backbone chemical shifts [My Copy] Journal of Biomolecular NMR, Vol. 44, No. 4. (1 August 2009), pp. 185-194. by Monalisa Swain, Hanudatta Atreya posted to secondary-structure nmr by babakap on 2009-10-24 05:19:28 as
	NOEnet-Use of NOE networks for NMR resonance assignment of proteins with known 3D structure [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 474-481. by Dirk Stratmann, Carine van Heijenoort, Eric Guittet posted to reassignment nmr assignment by babakap on 2009-10-06 21:29:50 as along with 2 people apaydin riffraff
	Inferential backbone assignment for sparse data [My Copy] Journal of Biomolecular NMR, Vol. 35, No. 3. (1 July 2006), pp. 187-208. by Olga Vitek, Chris Bailey-Kellogg, Bruce Craig, Jan Vitek posted to reassignment nmr assignment by babakap on 2009-10-06 21:28:02 as along with 1 person apaydin
	Reconsidering complete search algorithms for protein backbone NMR assignment [My Copy] Bioinformatics, Vol. 21, No. suppl_2. (1 September 2005), pp. ii230-236. by Olga Vitek, Chris Bailey-Kellogg, Bruce Craig, Paul Kuliniewicz, Jan Vitek posted to reassignment nmr assignment by babakap on 2009-10-06 21:27:25 as along with 1 person and 1 group lna Dartmouth Computer Science
	Model-based assignment and inference of protein backbone Nuclear Magnetic Resonances. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Olga Vitek, Jan Vitek, Bruce Craig, Chris Bailey-Kellogg posted to reassignment nmr by babakap on 2009-10-06 21:26:27 as along with 1 person apaydin
	A random graph approach to NMR sequential assignment. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 6. (g 2005), pp. 569-583. by Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan posted to reassignment nmr assignment by babakap on 2009-10-06 21:23:33 as along with 1 person apaydin
	Contact replacement for NMR resonance assignment [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i205-213. by Fei Xiong, Gopal Pandurangan, Chris Bailey-Kellogg posted to reassignment nmr by babakap on 2009-10-06 21:22:10 as along with 1 group Dartmouth Computer Science
	Clustering by Passing Messages Between Data Points [My Copy] Science, Vol. 315, No. 5814. (16 February 2007), pp. 972-976. by Brendan J. Frey, Delbert Dueck posted to dimensionlaity-reduction by babakap on 2009-05-12 15:32:35 as along with 40 people and 1 group ahmetbakan icecrown frohike wxvrqs singhsh gavin1332 dgront sen_cheng davidecellai zibuyu ilyashl trutat1 sfuniak doitian kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal nickluscombe rdiaz ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 matjes johnkork XIANG iris_2001 soundray EBI-regulation
	A Global Geometric Framework for Nonlinear Dimensionality Reduction [My Copy] Science, Vol. 290, No. 5500. (22 December 2000), pp. 2319-2323. by Joshua B. Tenenbaum, Vin Silva, John C. Langford posted to dimensionlaity-reduction by babakap on 2009-04-13 21:32:14 as along with 31 people and 4 groups deif pingmei seb1 Cavadini akuhn banus caicai klmoravec weiweiguo rramirezp dcoates thefillm christofseiler qwermish egozi aufrank k12u yas metamerist yama_tah tag mthomure sdvillal dgront voiklis dwf DavidSchulz teesid jung_dalglish mctor matjes ur-cls T_lab metric_embeddings ColDyn
	Transformation-Invariant Clustering Using the EM Algorithm [My Copy] IEEE Trans. Pattern Anal. Mach. Intell., Vol. 25, No. 1. (2003), pp. 1-17. by Brendan J. Frey, Nebojsa Jojic posted to no-tag by babakap on 2009-04-07 02:08:51 as
	Fully automated sequence-specific resonance assignments of hetero- nuclear protein spectra [My Copy] Journal of Biomolecular NMR, Vol. 27, No. 1. (1 September 2003), pp. 69-79. by Daniel Malmodin, Christina H. Papavoine, Martin Billeter posted to assignment nmr by babakap on 2009-03-23 17:57:22 as
	Some applications of Laplace eigenvalues of graphs [My Copy] In Graph Symmetry: Algebraic Methods and Applications, volume 497 of NATO ASI Series C, Vol. 497 (1997), pp. 227-275. by Bojan Mohar, Notes posted to no-tag by babakap on 2009-02-27 20:16:28 as along with 3 people AbnerCYH lillejul jobriath
	Probabilistic Principal Component Analysis [My Copy] Journal of the Royal Statistical Society, Series B, Vol. 61 (1999), pp. 611-622. by Michael E. Tipping, Chris M. Bishop posted to machine-learning by babakap on 2009-02-24 19:50:34 as along with 4 people abellogin engelhardt daniel51 dpl33
	A semidefinite programming approach to tensegrity theory and realizability of graphs [My Copy] In SODA '06: Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm (2006), pp. 766-775. by Anthony Man Cho So, Yinyu Ye posted to docking by babakap on 2009-02-18 02:00:06 as along with 1 person billtc
	A Unified Theorem on SDP Rank Reduction [My Copy] MATHEMATICS OF OPERATIONS RESEARCH, Vol. 33, No. 4. (1 November 2008), pp. 910-920. by Anthony M. So, Yinyu Ye, Jiawei Zhang posted to docking by babakap on 2009-02-17 05:16:58 as
	QUADRATIC OPTIMIZATION CHRISTODOULOS A. FLOUDAS [My Copy] by V. Visweswaran posted to docking by babakap on 2009-02-12 22:50:45 as
	A branch and cut algorithm for nonconvex quadratically constrained quadratic programming [My Copy] Mathematical Programming, Vol. 87, No. 1. (25 January 2000), pp. 131-152. by Charles Audet, Pierre Hansen, Brigitte Jaumard, Gilles Savard posted to docking by babakap on 2009-02-12 20:11:40 as
	Hidden convexity in some nonconvex quadratically constrained quadratic programming [My Copy] Mathematical Programming, Vol. 72, No. 1. (29 January 1996), pp. 51-63. by Aharon Ben-Tal, Marc Teboulle posted to docking by babakap on 2009-02-12 20:11:33 as
	A relaxation method for nonconvex quadratically constrained quadratic programs [My Copy] Journal of Global Optimization, Vol. 6, No. 3. (1 April 1995), pp. 215-230. by Faiz A. Al-Khayyal, Christian Larsen, Timothy Van Voorhis posted to docking by babakap on 2009-02-12 20:02:16 as
	Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 6. (15 March 1992), pp. 2195-2199. by E. Katchalski-Katzir, I. Shariv, M. Eisenstein, A. A. Friesem, C. Aflalo, I. A. Vakser posted to docking by babakap on 2009-02-12 16:51:13 as along with 9 people and 2 groups tjimenez jwm chad_davis ima j3xucite kazemi Ema LamBras timg Radiation_Damage Stressosome
	Shape Variation in Protein Binding Pockets and their Ligands. [My Copy] J Mol Biol, Vol. 368, No. 1. (20 April 2007), pp. 283-301. by A. Kahraman, R. J. Morris, R. A. Laskowski, J. M. Thornton posted to docking drug by babakap on 2009-02-12 16:46:55 as along with 4 people grottenolm martainn jwm tjimenez
	Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation. [My Copy] Journal of magnetic resonance (San Diego, Calif. : 1997), Vol. 124, No. 1. (January 1997), pp. 154-164. by E. G. Stein, L. M. Rice, A. T. Brünger posted to nmr tamd by babakap on 2009-01-30 16:45:09 as
	A fast recursive algorithm for molecular dynamics simulation [My Copy] J. Comput. Phys., Vol. 106, No. 2. (1993), pp. 258-268. by A. Jain, N. Vaidehi, G. Rodriguez posted to tamd by babakap on 2009-01-30 16:41:37 as
	Molecular dynamics simulations of biomolecules: long-range electrostatic effects. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 28 (1999), pp. 155-179. by C. Sagui, T. A. Darden posted to tamd by babakap on 2009-01-30 16:40:54 as along with 8 people Scis0000002 onufriev lillekatt ttjoseph dgront RamuAnandakrishnan AndreaColetta r2s2
	Automated NMR structure calculation with CYANA. [My Copy] Methods Mol Biol, Vol. 278 (2004), pp. 353-378. by P. Güntert posted to nmr tamd by babakap on 2009-01-30 16:39:03 as along with 1 person apaydin
	Torsion angle dynamics for NMR structure calculation with the new program D? [My Copy] Journal of Molecular Biology, Vol. 273, No. 1. (17 October 1997), pp. 283-298. by P. Güntert posted to nmr tamd by babakap on 2009-01-30 16:37:38 as along with 5 people dsmueller ras stharward BragilMassoud lna
	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. i32-40. by Iman Hajirasouliha, Fereydoun Hormozdiari, S. Cenk Sahinalp, Inanc Birol posted to genomics by babakap on 2009-01-30 16:31:57 as along with 7 people manduca n00c orzenil druvus kittipat reyez Neeperando
	Protein backbone angle restraints from searching a database for chemical shift and sequence homology. [My Copy] J Biomol NMR, Vol. 13, No. 3. (March 1999), pp. 289-302. by G. Cornilescu, F. Delaglio, A. Bax posted to nmr structure by babakap on 2009-01-30 16:12:56 as along with 4 people kumar_physics bmduggan j3xucite laurabailey
	POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14. by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch posted to genomics by babakap on 2009-01-30 16:11:40 as along with 3 people ilyashl chad_davis papamicd
	Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH. [My Copy] Journal of biomolecular NMR, Vol. 41, No. 3. (July 2008), pp. 127-138. by J. Volk, T. Herrmann, K. Wüthrich posted to assignment nmr by babakap on 2009-01-30 16:05:38 as along with 1 person apaydin

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