badger_master's library 90 articles Export

	Semantic Similarity in Biomedical Ontologies [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000443. by Catia Pesquita, Daniel Faria, André O. Falcão, Phillip Lord, Francisco M. Couto posted to ontology by badger_master on 2009-08-06 10:05:48 as along with 9 people and 1 group sobolevnrm bertelsen MarcoAlvarez adamjamesreid fgibson dullhunk guhjy phoenixzxl druvus Journal picks
	Six senses in the literature. The bleak sensory landscape of biomedical texts [My Copy] by Raul posted to no-tag by badger_master on 2009-06-05 15:51:15 as
	How to Get the Most out of Your Curation Effort [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000391. by Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur posted to text-mining by badger_master on 2009-06-04 10:38:43 as along with 16 people and 4 groups daveGerrard CorinYeats abhishek_tiwari daforerog klexa lptolik kiekyon sobolevnrm druvus martingerner cisevol AlexBateman VGreiff allysonlister fgibson dullhunk Orengo Group Journal Picks baker-group BergmanLab Journal picks
	Biomedical Discovery Acceleration, with Applications to Craniofacial Development [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000215. by Sonia M. Leach, Hannah Tipney, Weiguo Feng, et al.William A. Baumgartner, Priyanka Kasliwal, Ronald P. Schuyler, Trevor Williams, Richard A. Spritz, Lawrence Hunter posted to no-tag by badger_master on 2009-03-30 14:52:38 as along with 4 people installe gavinhoran coela mitko
	Combining biological networks to predict genetic interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 44. (Nov 2004), pp. 15682-15687. by Sharyl L. Wong, Lan V. Zhang, Amy H. Y. Tong, et al.Zhijian Li, Debra S. Goldberg, Oliver D. King, Guillaume Lesage, Marc Vidal, Brenda Andrews, Howard Bussey, Charles Boone, Frederick P. Roth posted to animals databases decision genetic genotype models mutation phenotype statistical trees by badger_master on 2009-02-27 00:01:34 as
	Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? [My Copy] Brief Bioinform, Vol. 9, No. 6. (Nov 2008), pp. 466-478. by Rainer Winnenburg, Thomas Wchter, Conrad Plake, Andreas Doms, Michael Schroeder posted to as abstracting and animals bibliographic biology computational databases genes genetic humans indexing information knowledge retrieval semantics storage topic by badger_master on 2009-02-27 00:01:34 as
	From XML to RDF: how semantic web technologies will change the design of 'omic' standards. [My Copy] Nat Biotechnol, Vol. 23, No. 9. (Sep 2005), pp. 1099-1103. by Xiaoshu Wang, Robert Gorlitsky, Jonas S. Almeida posted to algorithms and as biology biotechnology databa electrophoresis gel genomics information integration internet languages messenger programming proteomics retrieval rna semantics ses software statistics storage systems technology topic two-dimensional by badger_master on 2009-02-27 00:01:34 as
	The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes. [My Copy] BMC Bioinformatics, Vol. 9 Suppl 11 (2008) by Veronika Vincze, Gyrgy Szarvas, Richrd Farkas, Gyrgy Mra, Jnos Csirik posted to no-tag by badger_master on 2009-02-27 00:01:34 as
	Normalizing biomedical terms by minimizing ambiguity and variability. [My Copy] BMC Bioinformatics, Vol. 9 Suppl 3 (2008) by Yoshimasa Tsuruoka, John Mcnaught, Sophia Ananiadou posted to algorithms artifacts artificial as automated controlled dictionaries intelligence language natural pattern processing recognition terminology topic vocabulary by badger_master on 2009-02-27 00:01:34 as
	A comparison study on algorithms of detecting long forms for short forms in biomedical text. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 9 (2007) by Manabu Torii, Zhang Z. Hu, Min Song, Cathy H. Wu, Hongfang Liu posted to algorithms analysis and artific as automated cluster database ial information intelligence interface language management medline natural pattern periodicals processing recognition retrieval semantics storage systems topic user-computer by badger_master on 2009-02-27 00:01:34 as
	Fish oil, Raynaud's syndrome, and undiscovered public knowledge. [My Copy] Perspect Biol Med, Vol. 30, No. 1. (1986), pp. 7-18. by D. R. Swanson posted to animals blood disease diseases fish humans oils platelets raynaud vascular vessels viscosity by badger_master on 2009-02-27 00:01:34 as
	Ranking the whole MEDLINE database according to a large training set using text indexing. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by Brian P. Suomela, Miguel A. Andrade posted to abstracting algorithms and as bayes bibliographic biology cells computational controlled database databases false headings humans indexing information interface language management medline natural positive processing protein reactions retrieval stem storage subject systems theorem topic user-computer vocabulary by badger_master on 2009-02-27 00:01:34 as
	Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts. [My Copy] Pac Symp Biocomput (2000), pp. 529-540. by B. J. Stapley, G. Benoit posted to cerevisiae databases factual fungal genes information medline saccharomyces semantics software systems by badger_master on 2009-02-27 00:01:34 as
	Distilling conceptual connections from MeSH co-occurrences. [My Copy] Stud Health Technol Inform, Vol. 107, No. Pt 2. (2004), pp. 808-812. by Padmini Srinivasan, Dimitar Hristovski posted to and headings information medical medline retrieval semantics storage subject by badger_master on 2009-02-27 00:01:33 as
	Linking the kinome and phosphorylome--a comprehensive review of approaches to find kinase targets. [My Copy] Mol Biosyst, Vol. 4, No. 9. (Sep 2008), pp. 920-933. by Richelle Sopko, Brenda J. Andrews posted to animals biological enzyme humans inhibitors interference kinases mass models phosphorylation protein proteomics rna signal specificity spectrometry substrate system techniques transduction two-hybrid by badger_master on 2009-02-27 00:01:33 as
	Informatics and hypothesis-driven research. [My Copy] EMBO Rep, Vol. 3, No. 8. (Aug 2002) by Neil R. Smalheiser posted to as biology computational computers databases research statistics topic by badger_master on 2009-02-27 00:01:33 as
	Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. [My Copy] J Biomed Inform, Vol. 40, No. 3. (Jun 2007), pp. 316-324. by Martijn J. Schuemie, Barend Mons, Marc Weeber, Jan A. Kors posted to abstracting and animals as automation biology computational computers databases dictionaries genetic humans indexing information language models names natural processing protein retrieval statistical storage terminology topic by badger_master on 2009-02-27 00:01:33 as
	Pushing the envelope: extracytoplasmic stress responses in bacterial pathogens. [My Copy] Nat Rev Microbiol, Vol. 4, No. 5. (May 2006), pp. 383-394. by Gary Rowley, Michael Spector, Jan Kormanec, Mark Roberts posted to adaptation animals bacteria bacterial expression gene gram-negative humans infections membrane physiological proteins regulation signal transduction by badger_master on 2009-02-27 00:01:33 as
	Imitating manual curation of text-mined facts in biomedicine. [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (Sep 2006) by Raul R. Esteban, Ivan Iossifov, Andrey Rzhetsky posted to abstracting algorithms and artificial as automation biology biomedical cocaine computational computer indexing intelligence research sensitivity simulation specificity topic by badger_master on 2009-02-27 00:01:33 as
	Mining literature for systems biology. [My Copy] Brief Bioinform, Vol. 7, No. 4. (Dec 2006), pp. 399-406. by Phoebe M. Roberts posted to and animals as biology controlled databases genetic headings humans information medical periodicals retrieval storage subject systems topic vocabulary by badger_master on 2009-02-27 00:01:33 as
	EDGAR: extraction of drugs, genes and relations from the biomedical literature. [My Copy] Pac Symp Biocomput (2000), pp. 517-528. by T. C. Rindflesch, L. Tanabe, J. N. Weinstein, L. Hunter posted to algorithms as cells computer computing cultured databases factual genes humans informatics language medical medline neoplasms pharmaceutical preparations simulation terminology topic tumor by badger_master on 2009-02-27 00:01:33 as
	Mining molecular binding terminology from biomedical text. [My Copy] Proc AMIA Symp (1999), pp. 127-131. by T. C. Rindflesch, L. Hunter, A. R. Aronson posted to algorithms and as binding biology dna-binding gene information language library medical medline molecular natural pilot processing projects protein proteins retrieval storage system terminology topic unified by badger_master on 2009-02-27 00:01:33 as
	A case study in pathway knowledgebase verification. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by Stephen A. Racunas, Nigam H. Shah, Nina V. Fedoroff posted to algorithms and bases biological cell computer databases factual information knowledge languages models phenomena physiological programming proteome retrieval signal simulation storage transduction by badger_master on 2009-02-27 00:01:33 as
	HyBrow: a prototype system for computer-aided hypothesis evaluation. [My Copy] Bioinformatics, Vol. 20 Suppl 1 (Aug 2004), pp. i257-i264. by S. A. Racunas, N. H. Shah, I. Albert, N. V. Fedoroff posted to and biological biology cerevisiae computational databases galactose information integration models pilot projects protein proteins research retrieval saccharomyces storage systems by badger_master on 2009-02-27 00:01:33 as
	Cataloguing the HIV type 1 human protein interaction network. [My Copy] AIDS Res Hum Retroviruses, Vol. 24, No. 12. (Dec 2008), pp. 1497-1502. by Roger G. Ptak, William Fu, Brigitte, et al.Jonathan E. Dickerson, John W. Pinney, David L. Robertson, Mikhail N. Rozanov, Kenneth S. Katz, Donna R. Maglott, Kim D. Pruitt, Carl W. Dieffenbach posted to databases hiv hiv-1 host-pathogen humans infections interactions library medicine national of protein proteins states united us viral by badger_master on 2009-02-27 00:01:33 as
	AliBaba: PubMed as a graph. [My Copy] Bioinformatics, Vol. 22, No. 19. (Oct 2006), pp. 2444-2445. by Conrad Plake, Torsten Schiemann, Marcus Pankalla, Jrg Hakenberg, Ulf Leser posted to abstracting algorithms and as computer controlled database graphics indexing information interface language management natural periodicals processing retrieval software storage systems topic user-computer vocabulary by badger_master on 2009-02-27 00:01:33 as
	Temporal patterns of genes in scientific publications. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 29. (Jul 2007), pp. 12052-12056. by Thomas Pfeiffer, Robert Hoffmann posted to cerevisiae factors fungal gene genes networks publishing pubmed regulatory saccharomyces time by badger_master on 2009-02-27 00:01:33 as
	Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 10 (1999), pp. 104-112. by Ng, Wong posted to no-tag by badger_master on 2009-02-27 00:01:33 as
	Coauthorship networks and patterns of scientific collaboration. [My Copy] Proc Natl Acad Sci U S A, Vol. 101 Suppl 1 (Apr 2004), pp. 5200-5205. by Newman posted to as authorship computer models networks neural periodicals statistical topic by badger_master on 2009-02-27 00:01:33 as
	The structure of scientific collaboration networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 2. (Jan 2001), pp. 404-409. by M. E. Newman posted to analy authorship behavior bibliographic bibliometrics cluster cooperative databases humans medline models personnel research science sis theoretical by badger_master on 2009-02-27 00:01:33 as
	A life science Semantic Web: are we there yet? [My Copy] Sci STKE, Vol. 2005, No. 283. (May 2005) by Eric Neumann posted to as bases biological biology computational database disciplines genes humans information interface internet knowledge management models proteins science semantics systems terminology theoretical topic user-computer by badger_master on 2009-02-27 00:01:32 as
	The way we write. [My Copy] EMBO Rep, Vol. 4, No. 5. (May 2003), pp. 446-451. by Rebecca Netzel, Carolina P. Iratxeta, Peer Bork, Miguel A. Andrade posted to as biomedical communication internationality literature medline periodicals publishing research science topic writing by badger_master on 2009-02-27 00:01:32 as
	Terminology-driven mining of biomedical literature. [My Copy] Bioinformatics, Vol. 19, No. 8. (May 2003), pp. 938-943. by Goran Nenadic, Irena Spasic, Sophia Ananiadou posted to abbreviations algorithms and artificial as automated bibliographic controlled database databases information intelligence language management natural pattern processing recognition retrieval storage systems terminology topic vocabulary by badger_master on 2009-02-27 00:01:32 as
	Which gene did you mean? [My Copy] BMC Bioinformatics, Vol. 6 (2005) by Barend Mons posted to abstracting algorithms and artificial as automated bibliographic biology computa computers databases genomics indexing information integration intelligence internet language medline natural pattern processing publishing recognition retrieval software storage systems tional topic by badger_master on 2009-02-27 00:01:32 as
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted to and bias binding databases epidemiology factual false fungal mass messenger positive protein proteins reactions reference rna sensitivity specificity spectrometry standards system techniques two-hybrid by badger_master on 2009-02-27 00:01:32 as
	Combination of text-mining algorithms increases the performance. [My Copy] Bioinformatics, Vol. 22, No. 17. (Sep 2006), pp. 2151-2157. by Rainer Malik, Lude Franke, Arno Siebes posted to abstracting and as database databases indexing information integration language management medline natural periodicals processing protein proteome retrieval storage systems topic by badger_master on 2009-02-27 00:01:32 as
	Identification of key concepts in biomedical literature using a modified Markov heuristic. [My Copy] Bioinformatics, Vol. 19, No. 3. (Feb 2003), pp. 402-407. by W. H. Majoros, G. M. Subramanian, M. D. Yandell posted to abstracting algorithms and as au chains database indexing information language management markov medical medline models natural pattern processing recognition retrieval statistical storage system systems tomated topic unified by badger_master on 2009-02-27 00:01:32 as
	SAWTED: structure assignment with text description--enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons. [My Copy] Bioinformatics, Vol. 16, No. 2. (Feb 2000), pp. 125-129. by R. M. Maccallum, L. A. Kelley, M. J. Sternberg posted to algorithms automation databases factual internet proteins by badger_master on 2009-02-27 00:01:32 as
	Semantic similarity measures as tools for exploring the gene ontology. [My Copy] Pac Symp Biocomput (2003), pp. 601-612. by P. W. Lord, R. D. Stevens, A. Brass, C. A. Goble posted to alignment biology classification computational databases genomics humans protein proteomics sequence by badger_master on 2009-02-27 00:01:32 as
	BioThesaurus: a web-based thesaurus of protein and gene names. [My Copy] Bioinformatics, Vol. 22, No. 1. (Jan 2006), pp. 103-105. by Hongfang Liu, Zhang Z. Hu, Jian Zhang, Cathy Wu posted to and animals as biology computational controlled databases factual genetic genome humans information internet models names opic protein proteins retrieval storage t terminology vocabulary by badger_master on 2009-02-27 00:01:32 as
	Quantitative assessment of dictionary-based protein named entity tagging. [My Copy] J Am Med Inform Assoc, Vol. 13, No. 5. (2006), pp. 497-507. by Hongfang Liu, Zhang Z. Hu, Manabu Torii, Cathy Wu, Carol Friedman posted to as controlled dictionaries genes language names natural processing proteins topic vocabulary by badger_master on 2009-02-27 00:01:32 as
	Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach. [My Copy] Bioinformatics, Vol. 22, No. 17. (Sep 2006), pp. 2143-2150. by Shao Li, Lijiang Wu, Zhongqi Zhang posted to abstracting analysis and array as database databases expression gene indexing information integration language management medline natural oligonucleotide periodicals processing profiling protein proteome retrieval sequence signal storage systems topic transduction by badger_master on 2009-02-27 00:01:32 as
	Mining the literature and large datasets. [My Copy] Nat Biotechnol, Vol. 21, No. 9. (Sep 2003), pp. 976-977. by Joshua Labaer posted to abstracting and as database diseases expression gene genetic genome human humans inborn indexing information language management medline natural processing profiling retrieval software storage systems topic by badger_master on 2009-02-27 00:01:32 as
	Text mining and protein annotations: the construction and use of protein description sentences. [My Copy] Genome Inform, Vol. 17, No. 2. (2006), pp. 121-130. by Martin Krallinger, Rainer Malik, Alfonso Valencia posted to abstracting and as automated biology c computational database databases genetic indexing information language management natural pattern processing proteins recognition retrieval storage systems topi by badger_master on 2009-02-27 00:01:32 as
	Information content in Medline record fields. [My Copy] Int J Med Inform, Vol. 73, No. 6. (Jun 2004), pp. 515-527. by Ronald N. Kostoff, Joel A. Block, Jesse A. Stump, Kirstin M. Pfeil posted to abstracting and as indexing information medline retrieval states storage terminology topic united by badger_master on 2009-02-27 00:01:32 as
	Functional genomic hypothesis generation and experimentation by a robot scientist. [My Copy] Nature, Vol. 427, No. 6971. (Jan 2004), pp. 247-252. by Ross D. King, Kenneth E. Whelan, Ffion M. Jones, et al.Philip G. K. Reiser, Christopher H. Bryant, Stephen H. Muggleton, Douglas B. Kell, Stephen G. Oliver posted to acids algorithms amino analysis biological biology cerevisiae computational computer cost-benefit deletion design efficiency factors frames fungal gene genes genom humans ics learning models open personnel phenotype probability proteins reading research robotics saccharomyces simulation software time by badger_master on 2009-02-27 00:01:32 as
	Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era. [My Copy] Bioessays, Vol. 26, No. 1. (Jan 2004), pp. 99-105. by Douglas B. Kell, Stephen G. Oliver posted to animals as biological biology computational databases humans models science statistics topic by badger_master on 2009-02-27 00:01:32 as
	A literature network of human genes for high-throughput analysis of gene expression. [My Copy] Nat Genet, Vol. 28, No. 1. (May 2001), pp. 21-28. by T. K. Jenssen, A. Laegreid, J. Komorowski, E. Hovig posted to analysis and array as bibliographic communication computer database databases evaluation expression factual gene genetic genome human humans information internet management medline models networks oligonucleotide profiling regulation retrieval sequence storage studies systems topic by badger_master on 2009-02-27 00:01:32 as
	Literature mining for the biologist: from information retrieval to biological discovery. [My Copy] Nat Rev Genet, Vol. 7, No. 2. (Feb 2006), pp. 119-129. by Lars J. Jensen, Jasmin Saric, Peer Bork posted to and as biology computational databases information periodicals retrieval storage topic by badger_master on 2009-02-27 00:01:32 as
	Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. [My Copy] BMC Bioinformatics, Vol. 9 (2008) by Rob Jelier, Peter, Ellen Sterrenburg, et al.Johan T. den Dunnen, Gert, Jan A. Kors, Barend Mons posted to analysis animal animals array artificial as automated cluster controlled development diseases expression gene humans intelligence language medline meta-analysis models muscle muscular natural of oligonucleotide pattern processing profiling publications recognition reproducibility results sequence topic vocabulary by badger_master on 2009-02-27 00:01:32 as

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badger_master's library 90 articles Export

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