badi's library 38 articles Export

	Pipelining of Fuzzy ARTMAP without matchtracking: Correctness, performance bound, and Beowulf evaluation [My Copy] Neural Networks, Vol. 20, No. 1. (January 2007), pp. 109-128. by J. Castro, J. Secretan, M. Georgiopoulos, R. Demara, G. Anagnostopoulos, A. Gonzalez posted to parallelism distributed coarse_graining classification beowulf_cluster artmap by badi on 2009-10-11 05:23:35 as
	Learning classifiers from only positive and unlabeled data [My Copy] In KDD '08: Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining (2008), pp. 213-220. by Charles Elkan, Keith Noto posted to training_sets missing_data learning classifier classification by badi on 2009-10-11 05:03:47 as along with 7 people bross cdepablo kgajos donghai hongliangjie Mohan-S sdvillal
	Erythrocyte G Protein-Coupled Receptor Signaling in Malarial Infection [My Copy] Science, Vol. 301, No. 5640. (19 September 2003), pp. 1734-1736. by Travis Harrison, Benjamin U. Samuel, Thomas Akompong, et al.Heidi Hamm, Narla Mohandas, Jon W. Lomasney, Kasturi Haldar posted to malaria gpcr erythrocyte by badi on 2009-09-30 17:08:01 as along with 1 person svdate
	The malaria secretome: from algorithms to essential function in blood stage infection. [My Copy] PLoS pathogens, Vol. 4, No. 6. (June 2008) by Christiaan van Ooij, Pamela Tamez, Souvik Bhattacharjee, et al.N. Luisa Hiller, Travis Harrison, Konstantinos Liolios, Taco Kooij, Jai Ramesar, Bharath Balu, John Adams, Andrew P. Waters, Andy Waters, Chris J. Janse, Chris Janse, Kasturi Haldar posted to secretome protein_export malaria by badi on 2009-09-30 17:00:43 as along with 1 person GeeSharpMinor
	Normal mode partitioning of Langevin dynamics for biomolecules. [My Copy] The Journal of chemical physics, Vol. 128, No. 14. (14 April 2008) by Christopher R. Sweet, Paula Petrone, Vijay S. Pande, Jesús A. Izaguirre posted to molecular_dynamics langevin_dynamics by badi on 2009-09-30 16:56:39 as
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to protein_data_bank pdb by badi on 2009-09-30 16:07:48 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to pfam_protein_families_database by badi on 2009-09-30 16:03:50 as along with 13 people sjcockell MarcoAlvarez calderonv katholt urgi guhjy idoerg BioNica paszkows bicko niallhaslam gjuggler coela
	Support-vector networks [My Copy] Machine Learning, Vol. 20, No. 3. (1 September 1995), pp. 273-297. by Corinna Cortes, Vladimir Vapnik posted to svm computational_analysis classification by badi on 2009-09-29 23:48:00 as along with 7 people moonykily espriggs thefillm apostola lp2 jhs4jeb carlk
	The Universal Protein Resource (UniProt) 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D169-174. by UniProt Consortium posted to proteins database computational_analysis bioinformatics by badi on 2009-09-29 19:15:45 as along with 12 people saunders barmak7282 azazello MarcoAlvarez tfuji nedwards niallhaslam bicko gjuggler lptolik coela sjcockell
	Thyrostimulin, a heterodimer of two new human glycoprotein hormone subunits, activates the thyroid-stimulating hormone receptor. [My Copy] The Journal of clinical investigation, Vol. 109, No. 11. (June 2002), pp. 1445-1452. by Koji Nakabayashi, Hirotaka Matsumi, Alka Bhalla, et al.Jeehyeon Bae, Sietse Mosselman, Sheau Yu, Aaron J. Hsueh posted to thyroid_tsh thyroid_stimulating_hormone receptor_systems fsh_receptors by badi on 2009-09-29 19:12:05 as along with 1 person gcaltabiano
	Church’s Thesis and Functional Programming [My Copy] In Church's Thesis After 70 Years (28 February 2007), pp. 518-544. by David Turner edited by Adam Olszewski, Jan Wolenski, Robert Janusz posted to programming mathematical_logic lambda_calculus functional_programming by badi on 2009-09-27 05:09:49 as along with 2 people bunge mvermaat
	Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2265-2266. by Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesús Izaguirre posted to protein_protein_interactions prediction_algorithm maximum_likelihood_estimation cytoscape by badi on 2009-09-25 17:59:23 as along with 5 people guhjy grahamc phoenixzxl marck natstreet
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted to interaction_networks interaction_network cytoscape biological_networks bioinformatics by badi on 2009-09-25 05:51:48 as along with 19 people and 1 group daveGerrard greg ptrobajo tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder AlexanderPico GeneGo
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted to interaction_networks interaction_network expression_profiles cytoscape by badi on 2009-09-25 05:48:29 as along with 34 people and 3 groups JeremyZucker daveGerrard fastjoe23 stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
	Discovery of a Novel Binding Trench in HIV Integrase [My Copy] Journal of Medicinal Chemistry, Vol. 47, No. 8. (1 April 2004), pp. 1879-1881. by Julie R. Schames, Richard H. Henchman, Jay S. Siegel, Christoph A. Sotriffer, Haihong Ni, J. Andrew McCammon posted to modelling hiv_integrase hiv drug_development by badi on 2009-09-24 18:32:22 as along with 1 person aqeel
	A Host-Targeting Signal in Virulence Proteins Reveals a Secretome in Malarial Infection [My Copy] Science, Vol. 306, No. 5703. (10 December 2004), pp. 1934-1937. by N. Luisa Hiller, Souvik Bhattacharjee, Christiaan van Ooij, et al.Konstantinos Liolios, Travis Harrison, Carlos Lopez-Estrano, Kasturi Haldar posted to signalling secretome malaria by badi on 2009-09-24 18:24:25 as along with 2 people LeightonP shuzhens
	A Novel Fuzzy ARTMAP Architecture with Adaptive Feature Weights based on Onicescu's Informational Energy [My Copy] International Journal of Computers, Communications & Control (2009), pp. 104-117. by Razvan Andonie, Lucian M. Sasu, Angel Cataron posted to star_5 onicescus_informational_energy lvq fuzzy_artmap fam by badi on 2009-08-21 20:24:30 as
	Programming cells by multiplex genome engineering and accelerated evolution [My Copy] Nature, Vol. 460, No. 7257. (26 July 2009), pp. 894-898. by Harris H. Wang, Farren J. Isaacs, Peter A. Carr, et al.Zachary Z. Sun, George Xu, Craig R. Forest, George M. Church posted to synthetic_biology evolution by badi on 2009-08-15 00:42:27 as along with 13 people and 2 groups abhishek_tiwari TorstenWaldminghaus jdoconnell dswan Annab druvus dayjm pkonings zwang phoenixzxl biomcgary djkt dbikard Journal picks Synthetic Biology
	Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach [My Copy] IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 2, No. 2. (2005), pp. 119-130. by Hiroshi Mamitsuka posted to star_3 protein_protein_interactions learning data_mining algorithm by badi on 2009-08-13 15:41:34 as
	G-hash: towards fast kernel-based similarity search in large graph databases [My Copy] In EDBT '09: Proceedings of the 12th International Conference on Extending Database Technology (2009), pp. 472-480. by Xiaohong Wang, Aaron Smalter, Jun Huan, Gerald H. Lushington posted to star_5 kernel graph_distance graph clustering classification chemoinformatics algorithm by badi on 2009-08-12 20:39:07 as
	A Branch and Bound Algorithm for Matching Protein Structures [My Copy] In ICANNGA '07: Proceedings of the 8th international conference on Adaptive and Natural Computing Algorithms, Part II (2007), pp. 399-406. by Janez Konc, Dušanka Janežič posted to star_5 proteins maximum_clique graph clustering clique algorithm by badi on 2009-08-12 18:08:22 as
	A matrix based multilevel approach to identify functional protein modules [My Copy] Int. J. Bioinformatics Res. Appl., Vol. 4, No. 1. (2008), pp. 11-27. by Suely Oliveira, Sang-Cheol Seok posted to star_3 proteins graph clustering algorithm by badi on 2009-08-12 17:17:52 as
	A fast kernel-based multilevel algorithm for graph clustering [My Copy] In KDD '05: Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining (2005), pp. 629-634. by Inderjit Dhillon, Yuqiang Guan, Brian Kulis posted to star_5 graph clustering algorithm by badi on 2009-08-12 17:06:56 as
	Diffusion Kernels on Graphs and Other Discrete Structures [My Copy] In In Proceedings of the ICML (2002), pp. 315-322. by Risi I. Kondor, John Lafferty posted to diffusion_kernel graph kernel star_5 by badi on 2009-08-10 19:55:52 as
	Application of Improved K-mean Clustering in Predicting Protein-Protein Interactions [My Copy] In BMEI '08: Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics (2008), pp. 83-86. by Pingping Sun, Yanan Ma, Yazhuo Wei, et al.Zhiqiang Ma, Linying Lu, Ying Cui, Ping Huang posted to clustering k-means protein_protein_interactions by badi on 2009-08-10 18:03:37 as
	Scalable graph clustering using stochastic flows: applications to community discovery [My Copy] In KDD '09: Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining (2009), pp. 737-746. by Venu Satuluri, Srinivasan Parthasarathy posted to clustering data_mining graph by badi on 2009-08-10 17:52:35 as along with 1 person ChaTo
	Prediction of protein interactions by combining genetic algorithm with SVM method [My Copy] Evolutionary Computation, 2007. CEC 2007. IEEE Congress on In Evolutionary Computation, 2007. CEC 2007. IEEE Congress on (2007), pp. 320-325. by Bing Wang, Lu-Sheng Ge, Wen-You Jia, Li Liu, Fu-Chun Chen posted to genetic_algorithm protein_protein_interactions svm by badi on 2009-08-10 17:16:13 as
	Multi-class Protein Sequence Classification Using Fuzzy ARTMAP [My Copy] Systems, Man and Cybernetics, 2006. SMC '06. IEEE International Conference on In Systems, Man and Cybernetics, 2006. SMC '06. IEEE International Conference on, Vol. 2 (2006), pp. 1676-1681. by S. Mohamed, D. Rubin, T. Marwala posted to artmap bioinformatics classification fuzzy_artmap fuzzy_logic protein_sequence_classification by badi on 2009-08-10 15:47:28 as
	Fuzzy ARTMAP: A neural network architecture for incremental supervised learning of analog multidimensional maps [My Copy] Neural Networks, IEEE Transactions on In Neural Networks, IEEE Transactions on, Vol. 3, No. 5. (06 August 2002), pp. 698-713. by G. A. Carpenter, S. Grossberg, N. Markuzon, J. H. Reynolds, D. B. Rosen posted to artmap classification fuzzy_artmap fuzzy_logic learning by badi on 2009-08-04 23:53:14 as along with 1 person nkishan
	Fuzzy ART: Fast stable learning and categorization of analog patterns by an adaptive resonance system [My Copy] Neural Networks, Vol. 4, No. 6. (1991), pp. 759-771. by G. Carpenter, S. Grossberg, D. Rosen posted to art classification learning by badi on 2009-08-04 23:44:49 as along with 2 people jmarkow nkishan
	ARTMAP: Supervised real-time learning and classification of nonstationary data by a self-organizing neural network [My Copy] Neural Networks, Vol. 4, No. 5. (1991), pp. 565-588. by G. Carpenter, S. Grossberg, J. Reynolds posted to artmap classification neural_network by badi on 2009-08-04 23:37:49 as
	Graph kernels for chemical informatics [My Copy] Neural Networks, Vol. 18, No. 8. (October 2005), pp. 1093-1110. by L. Ralaivola, S. Swamidass, H. Saigo, P. Baldi posted to chemoinformatics graph kernel by badi on 2009-08-04 15:39:51 as along with 2 people kuhn baldigroup
	Metrics for attributed graphs based on the maximal similarity common subgraph [My Copy] Int. J. Pattern Recognition Artif. Intell, Vol. 2004 (2004), pp. 299-313. by Marcello Pelillo posted to graph_distance graph_matching mcss metric by badi on 2009-04-15 17:50:14 as
	Data reduction, exact, and heuristic algorithms for clique cover [My Copy] In In Proceedings 8th Workshop on Algorithm Engineering and Experiments ALENEX’06, Vol. 6 (2006), pp. 86-94. by Jens Gramm, Jiong Guo, Falk Hüffner, Rolf Niedermeier posted to clique graph matching by badi on 2009-04-15 03:03:19 as
	Clustering Graphs by Weighted Substructure Mining [My Copy] Proceedings of the 23rd International Conference on Machine Learning (2006) by Koji Tsuda, Taku Kudo posted to graph clustering by badi on 2009-04-12 10:27:51 as
	Experiments on graph clustering algorithms [My Copy] In In 11th Europ. Symp. Algorithms, Vol. 2832 (2003), pp. 568-579. by Ulrik Brandes, Marco Gaertler, Dorothea Wagner posted to graph clustering algorithm by badi on 2009-04-12 03:40:18 as
	The maximum clique problem [My Copy] In Handbook of Combinatorial Optimization, Vol. 4 (1999), pp. 1-74. by Immanuel M. Bomze, Marco Budinich, Panos M. Pardalos, Marcello Pelillo posted to clique graphs isomorphism maximum_clique by badi on 2009-04-09 03:49:09 as along with 2 people renatocarmo lillejul
	Evolutionary algorithm with the guided mutation for the maximum clique problem [My Copy] IEEE Transactions on Evolutionary Computation, Vol. 9 (2005) by Qingfu Zhang, Jianyong Sun, Edward Tsang posted to algorithm clique evolutionary graph graphs isomorphism maximum_clique genetic_algorithm by badi on 2009-04-09 03:45:56 as

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graph	11
classification	8
clustering	8
algorithm	7
star_5	5
artmap	4
clique	4
learning	4
protein_protein_interactions	4
bioinformatics	3
cytoscape	3
fuzzy_artmap	3
kernel	3
malaria	3
maximum_clique	3
proteins	3
chemoinformatics	2
computational_analysis	2
data_mining	2
fuzzy_logic	2
genetic_algorithm	2
graph_distance	2
graphs	2
interaction_network	2
interaction_networks	2
isomorphism	2
secretome	2
star_3	2
svm	2
art	1
beowulf_cluster	1
biological_networks	1
classifier	1
coarse_graining	1
database	1
diffusion_kernel	1
distributed	1
drug_development	1
erythrocyte	1
evolution	1
evolutionary	1
expression_profiles	1
fam	1
fsh_receptors	1
functional_programming	1
gpcr	1
graph_matching	1
hiv	1
hiv_integrase	1
k-means	1
lambda_calculus	1
langevin_dynamics	1
lvq	1
matching	1
mathematical_logic	1
maximum_likelihood_estimation	1
mcss	1
metric	1
missing_data	1
modelling	1
molecular_dynamics	1
neural_network	1
onicescus_informational_energy	1
parallelism	1
pdb	1
pfam_protein_families_database	1
prediction_algorithm	1
programming	1
protein_data_bank	1
protein_export	1
protein_sequence_classification	1
receptor_systems	1
signalling	1
synthetic_biology	1
thyroid_stimulating_hormone	1
thyroid_tsh	1
training_sets	1

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