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bakakaj's library [188 articles]

Recent papers added to bakakaj's library.
  • Leaf Age as a Risk Factor in Contamination of Lettuce with Escherichia coli O157:H7 and Salmonella enterica
    Appl. Environ. Microbiol., Vol. 74, No. 8. (15 April 2008), pp. 2298-2306.
    by MT Brandl, R Amundson
    posted to lettuce infection by bakakaj on 2008-04-29 15:21:52 as **
  • Analysis of the hierarchy of quorum-sensing regulation in Pseudomonas aeruginosa
    Analytical and Bioanalytical Chemistry, Vol. 387, No. 2. (January 2007), pp. 469-479.
    by Wagner, Victoria, Li, Luen-Luen, Isabella, Vincent, Iglewski, Barbara
    posted to qs lettuce aeruginosa by bakakaj on 2008-04-28 13:54:01 as **
  • A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family
    Nucl. Acids Res., Vol. 30, No. 11. (1 June 2002), pp. 2453-2459.
    by Anastasia N Nikolskaya, Michael Y Galperin
    posted to alginate aeruginosa by bakakaj on 2008-04-26 14:23:48 as **
  • Understanding the control of Pseudomonas aeruginosa alginate synthesis and the prospects for management of chronic infections in cystic fibrosis
    Molecular Microbiology, Vol. 56, No. 2. (April 2005), pp. 309-322.
    by M Ramsey, J Wozniak
    posted to review alginate aeruginosa by bakakaj on 2008-04-25 16:15:28 as **
  • Microbial pathogenesis in cystic fibrosis: co-ordinate regulation of heat-shock response and conversion to mucoidy in Pseudomonas aeruginosa.
    Molecular microbiology, Vol. 24, No. 2. (April 1997), pp. 411-420.
    by MJ Schurr, V Deretic
    posted to sigma-factor algu aeruginosa by bakakaj on 2008-04-25 15:50:41 as **
  • Control of AlgU, a member of the sigma E-like family of stress sigma factors, by the negative regulators MucA and MucB and Pseudomonas aeruginosa conversion to mucoidy in cystic fibrosis.
    Journal of bacteriology, Vol. 178, No. 16. (August 1996), pp. 4997-5004.
    by MJ Schurr, H Yu, JM Martinez-Salazar, JC Boucher, V Deretic
    posted to sigma-factor algu aeruginosa by bakakaj on 2008-04-25 15:35:37 as **
  • Sigma factors in Pseudomonas aeruginosa.
    FEMS microbiology reviews, Vol. 32, No. 1. (January 2008), pp. 38-55.
    by E Potvin, F Sanschagrin, RC Levesque
    posted to sigma-factor review aeruginosa by bakakaj on 2008-04-25 12:29:44 as **
  • Roles of alpha and Carbonic Anhydrases of Helicobacter pylori in the Urease-Dependent Response to Acidity and in Colonization of the Murine Gastric Mucosa
    Infect. Immun., Vol. 76, No. 2. (1 February 2008), pp. 497-509.
    by Stephanie Bury-Mone, George L Mendz, Graham E Ball, Marie Thibonnier, Kerstin Stingl, Chantal Ecobichon, Patrick Ave, Michel Huerre, Agnes Labigne, Jean-Michel Thiberge, Hilde De Reuse
    posted to anhydrase by bakakaj on 2008-04-24 21:35:57 as **
  • Identification of Genes in Xanthomonas campestris pv. vesicatoria Induced during Its Interaction with Tomato
    J. Bacteriol., Vol. 189, No. 17. (1 September 2007), pp. 6359-6371.
    by Dafna Tamir-Ariel, Naama Navon, Saul Burdman
    posted to xanthomonas plant infection by bakakaj on 2008-04-24 21:22:25 as **
  • Long-term anaerobic survival of the opportunistic pathogen Pseudomonas aeruginosa via pyruvate fermentation.
    Journal of bacteriology, Vol. 186, No. 14. (July 2004), pp. 4596-4604.
    by M Eschbach, K Schreiber, K Trunk, J Buer, D Jahn, M Schobert
    posted to pyruvate anaerobic aeruginosa by bakakaj on 2008-04-23 21:48:44 as **
  • The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 12. (5 June 2001), pp. 6911-6916.
    by I Vallet, JW Olson, S Lory, A Lazdunski, A Filloux
    posted to cupa biofilm aeruginosa by bakakaj on 2008-04-23 21:03:30 as **
  • Local and Global Regulators Linking Anaerobiosis to cupA Fimbrial Gene Expression in Pseudomonas aeruginosa
    J. Bacteriol., Vol. 189, No. 23. (1 December 2007), pp. 8667-8676.
    by Isabelle Vallet-Gely, Josh S Sharp, Simon L Dove
    posted to cupa anaerobic aeruginosa by bakakaj on 2008-04-23 20:59:14 as **
  • Assembly of Fimbrial Structures in Pseudomonas aeruginosa: Functionality and Specificity of Chaperone-Usher Machineries
    J. Bacteriol., Vol. 189, No. 9. (1 May 2007), pp. 3547-3555.
    by Segolene Ruer, Silke Stender, Alain Filloux, Sophie de Bentzmann
    posted to cupa aeruginosa by bakakaj on 2008-04-23 20:06:25 as **
  • Presence or Absence of Lipopolysaccharide O Antigens Affects Type III Secretion by Pseudomonas aeruginosa
    J. Bacteriol., Vol. 189, No. 6. (15 March 2007), pp. 2203-2209.
    by DK Augustin, Y Song, MS Baek, Y Sawa, G Singh, B Taylor, A Rubio-Mills, JL Flanagan, JP Wiener-Kronish, SV Lynch
    posted to t3ss lps aeruginosa by bakakaj on 2008-04-23 19:58:36 as **
  • Genetics of O-Antigen Biosynthesis in Pseudomonas aeruginosa
    Microbiol. Mol. Biol. Rev., Vol. 63, No. 3. (1 September 1999), pp. 523-553.
    by HL Rocchetta, LL Burrows, JS Lam
    posted to review lps aeruginosa by bakakaj on 2008-04-23 19:57:11 as **
  • Characterization of lipopolysaccharide-deficient mutants of Pseudomonas aeruginosa derived from serotypes O3, O5, and O6.
    Infect. Immun., Vol. 62, No. 3. (1 March 1994), pp. 809-817.
    by T Dasgupta, TR de Kievit, H Masoud, E Altman, JC Richards, I Sadovskaya, DP Speert, JS Lam
    posted to lps aeruginosa by bakakaj on 2008-04-23 19:31:02 as **
  • ExoY, an adenylate cyclase secreted by the Pseudomonas aeruginosa type III system
    Proceedings of the National Academy of Sciences, Vol. 95, No. 23. (10 November 1998), pp. 13899-13904.
    by Timothy L Yahr, Amy J Vallis, Michael K Hancock, Joseph T Barbieri, Dara W Frank
    posted to t3ss aeruginosa by bakakaj on 2008-04-23 17:46:24 as **
  • Pseudomonas aeruginosa ExoS and ExoT
    Reviews of Physiology, Biochemistry and Pharmacology (2005), pp. 79-92.
    by J Barbieri, J Sun
    posted to t3ss review aeruginosa by bakakaj on 2008-04-23 13:27:45 as **
  • Transcriptional regulation of the Pseudomonas aeruginosa type III secretion system
    Molecular Microbiology, Vol. 62, No. 3. (November 2006), pp. 631-640.
    by Yahr, L Timothy, Wolfgang, C Matthew
    posted to t3ss review aeruginosa by bakakaj on 2008-04-23 13:26:53 as **
  • Oxygen, cyanide and energy generation in the cystic fibrosis pathogen Pseudomonas aeruginosa.
    Advances in microbial physiology, Vol. 52 (2007), pp. 1-71.
    by HD Williams, JE Zlosnik, B Ryall
    posted to aeruginosa anaerobic review by bakakaj on 2008-04-22 13:54:21 as **
  • Characterization and purification of an outer membrane metalloproteinase from Pseudomonas aeruginosa with fibrinogenolytic activity
    Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Vol. 1454, No. 3. (30 August 1999), pp. 236-250.
    by Beate Fricke, Olaf Parchmann, Katharina Kruse, Peter Rücknagel, Angelika Schierhorn, Sieglinde Menge
    posted to icmp iron protease virulence by bakakaj on 2008-04-16 14:59:27 as **
  • Changes of microbial flora and wound colonization in burned patients
    Burns, Vol. 30, No. 4. (June 2004), pp. 357-361.
    by Serpil Erol, Ulku Altoparlak, Mufide N Akcay, Fehmi Celebi, Mehmet Parlak
    posted to burn by bakakaj on 2008-04-16 09:49:11 as **
  • Burn Wound Infections
    Clin. Microbiol. Rev., Vol. 19, No. 2. (1 April 2006), pp. 403-434.
    by Deirdre Church, Sameer Elsayed, Owen Reid, Brent Winston, Robert Lindsay
    posted to aeruginosa burn review by bakakaj on 2008-04-16 09:28:26 as **
  • Avirulence of a Pseudomonas aeruginosa algC mutant in a burned-mouse model of infection
    Infect. Immun., Vol. 63, No. 10. (1 October 1995), pp. 4166-4169.
    by JB Goldberg, MJ Coyne, AN Neely, IA Holder
    posted to alginate burn pseudomonas by bakakaj on 2008-04-16 09:25:16 as **
  • Zinc-responsive regulation of alternative ribosomal protein genes in Streptomyces coelicolor involves Zur and sigmaR.
    J Bacteriol (30 March 2007)
    by Gillian A A Owen, Ben Pascoe, Dimitris Kallifidas, Mark S B S Paget
    posted to ribosomal zinc by bakakaj on 2008-04-14 14:01:02 as ** along with 1 person Gehrke
  • Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins.
    Genome biology, Vol. 2, No. 9. (2001)
    by KS Makarova, VA Ponomarev, EV Koonin
    posted to aeruginosa ribosomal by bakakaj on 2008-04-14 11:02:13 as **
  • FppA, a novel Pseudomonas aeruginosa prepilin peptidase involved in assembly of type IVb pili.
    Journal of bacteriology, Vol. 188, No. 13. (July 2006), pp. 4851-4860.
    by S de Bentzmann, M Aurouze, G Ball, A Filloux
    posted to aeruginosa pili t4bss by bakakaj on 2008-04-02 11:32:30 as **
  • Use of model plant hosts to identify Pseudomonas aeruginosa virulence factors
    Proceedings of the National Academy of Sciences, Vol. 94, No. 24. (25 November 1997), pp. 13245-13250.
    by Laurence G Rahme, Man-Wah Tan, Long Le, Sandy M Wong, Ronald G Tompkins, Stephen B Calderwood, Frederick M Ausubel
    posted to lettuce model by bakakaj on 2008-03-11 13:33:49 as **
  • Identification of Pseudomonas aeruginosa Genes Involved in Virulence and Anaerobic Growth
    Infect. Immun., Vol. 74, No. 7. (1 July 2006), pp. 4237-4245.
    by Melanie J Filiatrault, Kristin F Picardo, Helen Ngai, Luciano Passador, Barbara H Iglewski
    posted to lettuce model by bakakaj on 2008-03-11 13:32:35 as **
  • Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR.
    Nucleic Acids Res, Vol. 30, No. 9. (1 May 2002)
    by MW Pfaffl, GW Horgan, L Dempfle
    posted to bioinformatics by bakakaj on 2008-03-11 13:23:49 as ** along with 1 person endo_anaphy2
  • Primer3 on the WWW for general users and for biologist programmers.
    Methods Mol Biol, Vol. 132 (2000), pp. 365-386.
    by S Rozen, H Skaletsky
    posted to bioinformatics by bakakaj on 2008-03-11 13:13:33 as ** along with 3 people aalibes usagi-kirin mimulus_99
  • Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
    BMC Bioinformatics, Vol. 7 (26 July 2006), 359.
    by Ian B Jeffery, Desmond G Higgins, Aedin C Culhane
    posted to bioinformatics transcriptomics by bakakaj on 2008-03-11 11:37:53 as ** along with 3 people jfr mayercd shikin
  • Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics, Vol. 4, No. 2. (April 2003), pp. 249-264.
    by RA Irizarry, B Hobbs, F Collin, YD Beazer-Barclay, KJ Antonellis, U Scherf, TP Speed
    posted to bioinformatics transcriptomics by bakakaj on 2008-03-11 11:37:27 as ** along with 14 people and 4 groups miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
  • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.
    FEBS Lett, Vol. 573, No. 1-3. (27 August 2004), pp. 83-92.
    by R Breitling, P Armengaud, A Amtmann, P Herzyk
    posted to bioinformatics transcriptomics by bakakaj on 2008-03-11 11:36:46 as ** along with 3 people kengg schuylrp 0004573p
  • Evidence for Polyadenylated mRNA in Pseudomonas aeruginosa
    J. Bacteriol., Vol. 186, No. 20. (15 October 2004), pp. 7015-7018.
    by Senthil S Saravanamuthu, Franz von Gotz, Prabhakar Salunkhe, Rathinam Chozhavendan, Robert Geffers, Jan Buer, Burkhard Tummler, Ivo Steinmetz
    posted to aeruginosa amplification by bakakaj on 2008-03-11 09:32:52 as **
  • Multivariate analysis of microarray data by principal component discriminant analysis: prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12.
    Microbiology, Vol. 152, No. Pt 1. (January 2006), pp. 257-272.
    by MJ van der Werf, B Pieterse, N van Luijk, F Schuren, B van der Werff-van der Vat, K Overkamp, RH Jellema
    posted to pca by bakakaj on 2008-02-28 09:38:23 as **
  • Comparative global transcription analysis of sodium hypochlorite, peracetic acid, and hydrogen peroxide on Pseudomonas aeruginosa.
    Appl Microbiol Biotechnol, Vol. 76, No. 5. (October 2007), pp. 1093-1105.
    by DA Small, W Chang, F Toghrol, WE Bentley
    posted to pca by bakakaj on 2008-02-27 10:57:10 as **
  • Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)
    BMC Genomics, Vol. 9 (29 January 2008), 56.
    by Wei Lian, Karthik P Jayapal, Salim Charaniya, Sarika Mehra, Frank Glod, Yun-Seung Kyung, David H Sherman, Wei-Shou Hu
    posted to pca by bakakaj on 2008-02-27 10:51:38 as **
  • Social cheating in Pseudomonas aeruginosa quorum sensing
    Proceedings of the National Academy of Sciences (26 September 2007), 0705653104.
    by Kelsi M Sandoz, Shelby M Mitzimberg, Martin Schuster
    posted to aeruginosa qs by bakakaj on 2008-02-19 14:40:25 as ** along with 1 person CareyNadell
  • Cooperation and conflict in quorum-sensing bacterial populations
    Nature, Vol. 450, No. 7168. (15 November 2007), pp. 411-414.
    by Stephen P Diggle, Ashleigh S Griffin, Genevieve S Campbell, Stuart A West
    posted to aeruginosa qs by bakakaj on 2008-02-19 14:39:44 as ** along with 6 people qwermish stevanspringer oamg blick CareyNadell niallhaslam
  • Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis.
    Proc Natl Acad Sci U S A, Vol. 101, No. 26. (29 June 2004), pp. 9792-9797.
    by PJ Wilderman, NA Sowa, DJ FitzGerald, PC FitzGerald, S Gottesman, UA Ochsner, ML Vasil
    posted to aeruginosa iron by bakakaj on 2008-02-19 14:16:10 as ** along with 1 person martainn
  • Large-scale isolation of candidate virulence genes of Pseudomonas aeruginosa by in vivo selection
    Proceedings of the National Academy of Sciences, Vol. 93, No. 19. (17 September 1996), pp. 10434-10439.
    by Jingyi Wang, Arcady Mushegian, Stephen Lory, Shouguang Jin
    posted to aeruginosa ivet virulence by bakakaj on 2008-02-19 14:15:17 as **
  • Isolation and characterization of Pseudomonas aeruginosa genes inducible by respiratory mucus derived from cystic fibrosis patients.
    Mol Microbiol, Vol. 22, No. 5. (December 1996), pp. 1005-1012.
    by J Wang, S Lory, R Ramphal, S Jin
    posted to aeruginosa cf ivet by bakakaj on 2008-02-19 14:12:47 as **
  • Transcriptome analysis of Pseudomonas aeruginosa growth: comparison of gene expression in planktonic cultures and developing and mature biofilms.
    J Bacteriol, Vol. 187, No. 18. (September 2005), pp. 6571-6576.
    by RD Waite, A Papakonstantinopoulou, E Littler, MA Curtis
    posted to aeruginosa biofilm transcriptomics by bakakaj on 2008-02-19 14:07:59 as **
  • Clustering of Pseudomonas aeruginosatranscriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles
    BMC Genomics, Vol. 7 (26 June 2006), 162.
    by Richard D Waite, Alberto Paccanaro, Anastasia Papakonstantinopoulou, Jacob M Hurst, Mansoor Saqi, Eddie Littler, Michael A Curtis
    posted to aeruginosa biofilm transcriptomics by bakakaj on 2008-02-19 14:07:14 as **
  • Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment.
    J Bacteriol, Vol. 185, No. 7. (April 2003), pp. 2080-2095.
    by VE Wagner, D Bushnell, L Passador, AI Brooks, BH Iglewski
    posted to aeruginosa qs transcriptomics by bakakaj on 2008-02-19 13:59:47 as ** along with 1 person mhucka
  • Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
    Nature, Vol. 406, No. 6799. (2000), pp. 959-964.
    by CK Stover, XQ Pham, AL Erwin, SD Mizoguchi, P Warrener, MJ Hickey, Brinkman, WO Hufnagle, DJ Kowalik, M Lagrou, RL Garber, L Goltry, E Tolentino, S Westbrock-Wadman, Y Yuan, LL Brody, SN Coulter, KR Folger, A Kas, K Larbig, R Lim, K Smith, D Spencer, Wong, Z Wu, IT Paulsen, J Reizer, MH Saier, REW Hancock, S Lory, MV Olson
    posted to aeruginosa genom by bakakaj on 2008-02-19 11:16:52 as ** along with 2 people and 1 group treangen beatrizfernandez Microbial-Ecology
  • Experimental studies of the pathogenesis of infections due to Pseudomonas aeruginosa: description of a burned mouse model.
    J Infect Dis, Vol. 131, No. 6. (June 1975), pp. 688-691.
    by DD Stieritz, IA Holder
    posted to aeruginosa burn by bakakaj on 2008-02-19 11:15:26 as **
  • Host defense peptides in burns
    Burns, Vol. 30, No. 7. (November 2004), pp. 619-627.
    by L Steinstraesser, Y Oezdogan, SC Wang, HU Steinau
    posted to burn host-pathogen review by bakakaj on 2008-02-19 11:14:09 as **
  • Burn wounds infected with Pseudomonas aeruginosa triggers weight loss in rats
    BMC Surgery, Vol. 5, No. 1. (2005)
    by Lars Steinstraesser, Olaf Burkhard, Ming Fan, Frank Jacobsen, Marcus Lehnhardt, Grace Su, Adrien Daigeler, Hans Steinau, Daniel Remick, Stewart Wang
    posted to aeruginosa burn by bakakaj on 2008-02-19 11:12:20 as **
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