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	Comparison of amplification methods for transcriptomic analyses of low abundance prokaryotic RNA sources. [My Copy] J Microbiol Methods, Vol. 68, No. 2. (February 2007), pp. 385-391. by P. Francois, C. Garzoni, M. Bento, J. Schrenzel posted to amplification rna by bakakaj on 2008-02-18 10:26:31 as along with 2 people mfgreen guhjy
	Functional characterization of the gene PA2384 in large-scale gene regulation in response to iron starvation in Pseudomonas aeruginosa. [My Copy] J Biotechnol, Vol. 132, No. 4. (1 December 2007), pp. 342-352. by P. Zheng, J. Sun, R. Geffers, A. P. Zeng posted to aeruginosa iron transcriptomics by bakakaj on 2008-02-18 16:35:14 as
	High-affinity Zn2+ uptake system ZnuABC is required for bacterial zinc homeostasis in intracellular environments and contributes to the virulence of Salmonella enterica. [My Copy] Infect Immun, Vol. 75, No. 12. (December 2007), pp. 5867-5876. by S. Ammendola, P. Pasquali, C. Pistoia, et al.P. Petrucci, P. Petrarca, G. Rotilio, A. Battistoni posted to salmonella zinc by bakakaj on 2008-02-07 12:31:23 as
	Bacterial zinc uptake and regulators [My Copy] Current Opinion in Microbiology In Cell Regulation, Vol. 8, No. 2. (April 2005), pp. 196-202. by Klaus Hantke posted to review zinc by bakakaj on 2008-02-08 09:54:51 as
	Femtomolar Sensitivity of Metalloregulatory Proteins Controlling Zinc Homeostasis [My Copy] Science, Vol. 292, No. 5526. (29 June 2001), pp. 2488-2492. by Caryn E. Outten, Thomas V. O'Halloran posted to zinc by bakakaj on 2008-02-07 17:25:39 as
	Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. [My Copy] Genome research (1 December 2008) by Craig Winstanley, Morgan G I G. Langille, Joanne L L. Fothergill, et al.Irena Kukavica-Ibrulj, Catherine Paradis-Bleau, François Sanschagrin, Nicholas R R. Thomson, Geoff L L. Winsor, Michael A A. Quail, Nicola Lennard, Alexandra Bignell, Louise Clarke, Kathy Seeger, David Saunders, David Harris, Julian Parkhill, Robert E W E. Hancock, Fiona S L S. Brinkman, Roger C C. Levesque posted to aeruginosa genom by bakakaj on 2009-01-05 13:53:51 as along with 1 person mlangill
	Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis. [My Copy] Nat Protoc, Vol. 2, No. 3. (2007), pp. 739-752. by K. Kurimoto, Y. Yabuta, Y. Ohinata, M. Saitou posted to single-cell transcriptomics by bakakaj on 2008-08-27 10:03:19 as along with 2 people guhjy eskay
	Single-cell cDNA high-density oligonucleotide microarray analysis: detection of individual cell types and properties in complex biological processes. [My Copy] Reproductive biomedicine online, Vol. 16, No. 1. (January 2008), pp. 26-40. by M. Saitou, Y. Yabuta, K. Kurimoto posted to single-cell transcriptomics by bakakaj on 2008-08-27 09:51:27 as
	Minimally invasive determination of mRNA concentration in single living bacteria. [My Copy] Nucleic acids research, Vol. 36, No. 12. (30 July 2008) by Călin C. Guet, Luke Bruneaux, Taejin L. Min, et al.Dan Siegal-Gaskins, Israel Figueroa, Thierry Emonet, Philippe Cluzel posted to rna single-cell by bakakaj on 2008-07-30 11:04:11 as along with 3 people dantimatter austin madhadron
	Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells [My Copy] BMC Genomics, Vol. 9 (03 June 2008), 268. by Tatiana Subkhankulova, Michael J. Gilchrist, Frederick J. Livesey posted to amplification single-cell by bakakaj on 2008-07-30 11:03:02 as along with 1 person guhjy
	Comparative evaluation of linear and exponential amplification techniques for expression profiling at the single-cell level [My Copy] Genome Biology, Vol. 7, No. 3. (2006) by Tatiana Subkhankulova, Frederick Livesey posted to amplification single-cell transcriptomics by bakakaj on 2008-07-30 11:02:28 as
	The Influence of Iron on Pseudomonas aeruginosa Physiology: A REGULATORY LINK BETWEEN IRON AND QUORUM SENSING [My Copy] J. Biol. Chem., Vol. 283, No. 23. (6 June 2008), pp. 15558-15567. by Amanda G. Oglesby, John M. Farrow, Joon-Hee Lee, et al.Andrew P. Tomaras, E. P. Greenberg, Everett C. Pesci, Michael L. Vasil posted to aeruginosa iron prrf by bakakaj on 2008-07-28 01:16:31 as along with 1 person celageorgia
	How we learnt about iron acquisition in Pseudomonas aeruginosa: a series of very fortunate events [My Copy] BioMetals, Vol. 20, No. 3-4. (June 2007), pp. 587-601. by Michael Vasil posted to aeruginosa anaerobic iron prrf by bakakaj on 2008-07-28 01:15:40 as
	Cell and environment interactions in tumor microregions: the multicell spheroid model. [My Copy] Science (New York, N.Y.), Vol. 240, No. 4849. (8 April 1988), pp. 177-184. by R. M. Sutherland posted to tumor by bakakaj on 2008-07-28 01:12:41 as along with 1 person balicea
	Elucidating the molecular mechanisms of bacterial virulence using non-mammalian hosts [My Copy] Molecular Microbiology, Vol. 37, No. 5. (2000), pp. 981-988. by Shalina Mahajan-Miklos, Laurence G. Rahme, Frederick M. Ausubel posted to aeruginosa plant by bakakaj on 2008-07-28 00:42:23 as
	Bioconductor: open software development for computational biology and bioinformatics [My Copy] Genome Biology, Vol. 5, No. 10. (2004), R80. by Robert Gentleman, Vincent Carey, Douglas Bates, et al.Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin Maechler, Anthony Rossini, Gunther Sawitzki, Colin Smith, Gordon Smyth, Luke Tierney, Jean Yang, Jianhua Zhang posted to bioconductor statistics by bakakaj on 2008-07-21 17:05:51 as along with 25 people and 1 group schwalb mqbphcw3 isimpson anf sebastien_vigneau najwvandijk coela shikin YukaH daforerog czeller gupton Dax42 pcahan1 balajis dullhunk giovanni incovoma talponer medha1 wirawan joule zhouyu bertelsen sanchezbuelna GeschwindLab
	Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue [My Copy] BMC Bioinformatics, Vol. 8 (22 May 2007), 165. by Marc Strickert, Nese Sreenivasulu, Bjorn Usadel, Udo Seiffert posted to mds statistics by bakakaj on 2008-07-21 14:26:26 as
	Multidimensional scaling for large genomic data sets [My Copy] BMC Bioinformatics, Vol. 9 (04 April 2008), 179. by Jengnan Tzeng, Henry H. Lu, Wen-Hsiung Li posted to mds statistics by bakakaj on 2008-07-21 14:26:04 as along with 2 people jfr guhjy
	Heterogeneity of biofilms formed by nonmucoid Pseudomonas aeruginosa isolates from patients with cystic fibrosis. [My Copy] Journal of clinical microbiology, Vol. 43, No. 10. (October 2005), pp. 5247-5255. by B. Lee, J. A. Haagensen, O. Ciofu, J. B. Andersen, N. Høiby, S. Molin posted to biofilm cf by bakakaj on 2008-07-18 21:02:21 as
	DNA Microarrays in Analysis of Quorum Sensing: Strengths and Limitations [My Copy] J. Bacteriol., Vol. 185, No. 7. (1 April 2003), pp. 2061-2065. by Michael L. Vasil posted to aeruginosa qs review transcriptomics by bakakaj on 2008-07-14 18:47:16 as
	Engineering the luxCDABE genes from Photorhabdus luminescens to provide a bioluminescent reporter for constitutive and promoter probe plasmids and mini-Tn5 constructs. [My Copy] FEMS microbiology letters, Vol. 163, No. 2. (15 June 1998), pp. 193-202. by M. K. Winson, S. Swift, P. J. Hill, et al.C. M. Sims, G. Griesmayr, B. W. Bycroft, P. Williams, G. S. Stewart posted to lux by bakakaj on 2008-07-13 14:29:23 as
	Role of haemolytic and non-haemolytic phospholipase C from Pseudomonas aeruginosa in interleukin-8 release from human monocytes. [My Copy] Journal of medical microbiology, Vol. 46, No. 6. (June 1997), pp. 471-478. by B. König, M. L. Vasil, W. König posted to aeruginosa cf host-pathogen interacitons by bakakaj on 2008-07-13 13:31:09 as
	Components of the protein-excretion apparatus of Pseudomonas aeruginosa are processed by the type IV prepilin peptidase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 1. (1 January 1992), pp. 47-51. by D. N. Nunn, S. Lory posted to aeruginosa t4bss by bakakaj on 2008-07-11 16:04:15 as
	Regulation of enzyme synthesis in the arginine deiminase pathway of Pseudomonas aeruginosa. [My Copy] Journal of bacteriology, Vol. 144, No. 1. (October 1980), pp. 159-163. by A. Mercenier, J. P. Simon, C. Vander Wauven, D. Haas, V. Stalon posted to aeruginosa anaerobic by bakakaj on 2008-07-11 13:43:21 as
	Anaerobic metabolism and quorum sensing by Pseudomonas aeruginosa biofilms in chronically infected cystic fibrosis airways: rethinking antibiotic treatment strategies and drug targets. [My Copy] Advanced drug delivery reviews, Vol. 54, No. 11. (5 December 2002), pp. 1425-1443. by D. J. Hassett, J. Cuppoletti, B. Trapnell, et al.S. V. Lymar, J. J. Rowe, S. S. Yoon, G. M. Hilliard, K. Parvatiyar, M. C. Kamani, D. J. Wozniak, S. H. Hwang, T. R. McDermott, U. A. Ochsner posted to aeruginosa anaerobic biofilm cf by bakakaj on 2008-07-11 13:42:45 as
	Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availability. [My Copy] Applied and environmental microbiology, Vol. 64, No. 10. (October 1998), pp. 4035-4039. by K. D. Xu, P. S. Stewart, F. Xia, C. T. Huang, G. A. McFeters posted to aeruginosa anaerobic biofilm by bakakaj on 2008-07-11 13:41:48 as along with 1 person florisbuijzen
	Deletion of znuA Virulence Factor Attenuates Brucella abortus and Confers Protection against Wild-Type Challenge [My Copy] Infect. Immun., Vol. 74, No. 7. (1 July 2006), pp. 3874-3879. by Xinghong Yang, Todd Becker, Nancy Walters, David W. Pascual posted to zinc by bakakaj on 2008-07-11 13:39:40 as
	Zinc uptake system (znuA locus) of Brucella abortus is essential for intracellular survival and virulence in mice. [My Copy] The Journal of veterinary medical science / the Japanese Society of Veterinary Science, Vol. 66, No. 9. (September 2004), pp. 1059-1063. by S. Kim, K. Watanabe, T. Shirahata, M. Watarai posted to zinc by bakakaj on 2008-07-11 13:37:04 as
	The high-affinity zinc-uptake system znuACB is under control of the iron-uptake regulator (fur) gene in the animal pathogen Pasteurella multocida [My Copy] FEMS Microbiology Letters, Vol. 221, No. 1. (11 April 2003), pp. 31-37. by Elena M. Garrido, Montserrat Bosch, Ricardo Medina, et al.Montserrat Llagostera, Pérez, Ignacio Badiola, Jordi Barbé posted to zinc by bakakaj on 2008-07-11 13:36:03 as
	Role of the High-Affinity Zinc Uptake znuABC System in Salmonella enterica Serovar Typhimurium Virulence [My Copy] Infect. Immun., Vol. 70, No. 8. (1 August 2002), pp. 4721-4725. by Susana Campoy, Monica Jara, Nuria Busquets, Perez, Ignacio Badiola, Jordi Barbe posted to salmonella zinc by bakakaj on 2008-07-11 13:35:28 as
	Iron metabolism in pathogenic bacteria. [My Copy] Annual review of microbiology, Vol. 54 (2000), pp. 881-941. by C. Ratledge, L. G. Dover posted to iron review by bakakaj on 2008-07-11 13:34:17 as along with 1 person wilbur
	Iron acquisition in microbial pathogenesis. [My Copy] Trends in microbiology, Vol. 1, No. 2. (May 1993), pp. 66-69. by S. M. Payne posted to iron review by bakakaj on 2008-07-11 13:33:24 as
	An operon containing fumC and sodA encoding fumarase C and manganese superoxide dismutase is controlled by the ferric uptake regulator in Pseudomonas aeruginosa: fur mutants produce elevated alginate levels. [My Copy] Journal of bacteriology, Vol. 179, No. 5. (March 1997), pp. 1452-1459. by D. J. Hassett, M. L. Howell, U. A. Ochsner, M. L. Vasil, Z. Johnson, G. E. Dean posted to aeruginosa alginate by bakakaj on 2008-07-11 13:32:20 as
	Inhibition of quorum sensing in Pseudomonas aeruginosa biofilm bacteria by a halogenated furanone compound [My Copy] Microbiology, Vol. 148, No. 1. (1 January 2002), pp. 87-102. by Morten Hentzer, Kathrin Riedel, Thomas B. Rasmussen, et al.Arne Heydorn, Jens B. Andersen, Matthew R. Parsek, Scott A. Rice, Leo Eberl, Soren Molin, Niels Hoiby, Staffan Kjelleberg, Michael Givskov posted to aeruginosa biofilm gfp qs by bakakaj on 2008-07-11 13:28:05 as
	A Convenient Synthesis of Protoanemonin. [My Copy] ChemInform, Vol. 35, No. 8. (2004) by Caroline Crey, Pascal Dumy, Jean Lhomme, Mitsuharu Kotera posted to protoanemonin by bakakaj on 2008-07-11 13:21:58 as
	From xenobiotic to antibiotic, formation of protoanemonin from 4-chlorocatechol by enzymes of the 3-oxoadipate pathway. [My Copy] The Journal of biological chemistry, Vol. 270, No. 49. (8 December 1995), pp. 29229-29235. by R. Blasco, R. M. Wittich, M. Mallavarapu, K. N. Timmis, D. H. Pieper posted to protoanemonin by bakakaj on 2008-07-11 12:36:35 as
	Anaerobic survival of Pseudomonas aeruginosa by pyruvate fermentation requires an Usp-type stress protein. [My Copy] Journal of bacteriology, Vol. 188, No. 2. (January 2006), pp. 659-668. by K. Schreiber, N. Boes, M. Eschbach, et al.L. Jaensch, J. Wehland, T. Bjarnsholt, M. Givskov, M. Hentzer, M. Schobert posted to aeruginosa anaerobic pyruvate by bakakaj on 2008-07-11 12:35:44 as
	Characterization of five novel Pseudomonas aeruginosa cell-surface signalling systems. [My Copy] Molecular microbiology, Vol. 67, No. 2. (January 2008), pp. 458-472. by M. A. Llamas, M. J. Mooij, M. Sparrius, C. M. Vandenbroucke-Grauls, C. Ratledge, W. Bitter posted to aeruginosa ecf iron by bakakaj on 2008-07-11 12:33:24 as along with 1 person emmackinnon
	The alginate regulator AlgR and an associated sensor FimS are required for twitching motility in Pseudomonas aeruginosa. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 18. (3 September 1996), pp. 9839-9843. by C. B. Whitchurch, R. A. Alm, J. S. Mattick posted to aeruginosa alginate algr by bakakaj on 2008-07-11 12:32:38 as
	Prokaryotic Osmoregulation: Genetics and Physiology [My Copy] Annual Review of Microbiology, Vol. 45, No. 1. (1991), pp. 569-606. by L. N. Csonka, A. D. Hanson posted to osmoregulation by bakakaj on 2008-07-11 12:31:47 as
	Fluorescence-based isolation of bacterial genes expressed within host cells. [My Copy] Science (New York, N.Y.), Vol. 277, No. 5334. (26 September 1997), pp. 2007-2011. by R. H. Valdivia, S. Falkow posted to in-vivo by bakakaj on 2008-07-11 12:30:37 as
	Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen. [My Copy] Genome research, Vol. 15, No. 2. (February 2005), pp. 321-329. by S. Lewenza, J. L. Gardy, F. S. Brinkman, R. E. Hancock posted to aeruginosa membrane transport by bakakaj on 2008-07-11 12:26:16 as
	Pseudomonas keratitis. The role of an uncharacterized exoprotein, protease IV, in corneal virulence. [My Copy] Investigative ophthalmology & visual science, Vol. 37, No. 4. (March 1996), pp. 534-543. by R. J. O'Callaghan, L. S. Engel, J. A. Hobden, M. C. Callegan, L. C. Green, J. M. Hill posted to aeruginosa corneal infection keratitis by bakakaj on 2008-07-11 12:24:51 as
	Proteomic study of the Bacillus subtilis ribosome: Finding of zinc-dependent replacement for ribosomal protein L31 paralogues. [My Copy] The Journal of general and applied microbiology, Vol. 52, No. 5. (October 2006), pp. 249-258. by H. Nanamiya, F. Kawamura, S. Kosono posted to bacillus ribosomal zinc by bakakaj on 2008-07-11 12:23:00 as
	Responses of benthic macroinvertebrates to thin-layer disposal of dredged material in Mississippi Sound, USA [My Copy] Marine Pollution Bulletin, Vol. 54, No. 1. (January 2007), pp. 42-52. by Dara H. Wilber, Douglas G. Clarke, Susan I. Rees posted to statistics by bakakaj on 2008-07-11 12:17:51 as
	Non-parametric multivariate analyses of changes in community structure [My Copy] Austral Ecology, Vol. 18, No. 1. (1993), pp. 117-143. by K. R. Clarke posted to mds statistics by bakakaj on 2008-07-11 12:16:41 as
	A complementation analysis of the restriction and modification of DNA in Escherichia coli. [My Copy] Journal of molecular biology, Vol. 41, No. 3. (14 May 1969), pp. 459-472. by H. W. Boyer, D. Roulland-Dussoix posted to ecoli by bakakaj on 2008-07-11 12:02:00 as
	Halogenated furanones inhibit quorum sensing through accelerated LuxR turnover. [My Copy] Microbiology (Reading, England), Vol. 148, No. Pt 4. (April 2002), pp. 1119-1127. by M. Manefield, T. B. Rasmussen, M. Henzter, et al.J. B. Andersen, P. Steinberg, S. Kjelleberg, M. Givskov posted to aeruginosa qs by bakakaj on 2008-07-11 12:00:45 as
	Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 22. (30 May 2006), pp. 8487-8492. by E. E. Smith, D. G. Buckley, Z. Wu, et al.C. Saenphimmachak, L. R. Hoffman, D. A. D'Argenio, S. I. Miller, B. W. Ramsey, D. P. Speert, S. M. Moskowitz, J. L. Burns, R. Kaul, M. V. Olson posted to aeruginosa cf genom by bakakaj on 2008-07-11 11:00:46 as
	Staphylococcus aureus serves as an iron source for Pseudomonas aeruginosa during in vivo coculture. [My Copy] Journal of bacteriology, Vol. 187, No. 2. (January 2005), pp. 554-566. by L. M. Mashburn, A. M. Jett, D. R. Akins, M. Whiteley posted to aeruginosa coinfection in-vivo iron by bakakaj on 2008-07-11 10:59:20 as

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aeruginosa	201
qs	58
iron	35
review	35
transcriptomics	32
biofilm	21
burn	21
cf	19
zinc	19
alginate	14
anaerobic	12
pqs	11
in-vivo	10
host-pathogen	9
t3ss	9
virulence	9
epidemiology	8
model	7
proteomics	6
vfr	6
bioinformatics	5
single-cell	5
statistics	5
algr	4
amplification	4
coinfection	4
cupa	4
genom	4
haem	4
hydrogen-peroxide	4
infection	4
lettuce	4
mutant	4
anhydrase	3
bioluminescence	3
genotyping	3
ivet	3
lps	3
mds	3
pca	3
plant	3
plasmid	3
ribosomal	3
salmonella	3
sigma-factor	3
acute	2
algu	2
betaine	2
burkholderia	2
carbonic	2
interacitons	2
metabolism	2
pa14	2
protoanemonin	2
prrf	2
pseudomonas	2
pyruvate	2
rna	2
sulfate	2
t4bss	2
tonb	2
16s	1
acinetobacter	1
antibiotic	1
bacillus	1
bioconductor	1
cha	1
corneal	1
cyclic-gmp	1
eburst	1
ecf	1
ecoli	1
flagellin	1
galu	1
gfp	1
glycigen	1
icmp	1
keratitis	1
kt2440	1
lux	1
membrane	1
nano	1
nubiotics	1
osmoregulation	1
pa4063	1
papi	1
phenazine	1
phosphorylase	1
pili	1
population	1
protease	1
ptxr	1
putida	1
qscr	1
soxr	1
sputum	1
staphylococcus	1
transport	1
tumor	1
xanthomonas	1

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