balabu's library 280 articles Export

	Live cell imaging distinguishes bona fide human iPS cells from partially reprogrammed cells [My Copy] Nat Biotech, Vol. 27, No. 11. (11 October 2009), pp. 1033-1037. by Elayne M. Chan, Sutheera Ratanasirintrawoot, In-Hyun Park, et al.Philip D. Manos, Yuin-Han Loh, Hongguang Huo, Justine D. Miller, Odelya Hartung, Junsung Rho, Tan A. Ince, George Q. Daley, Thorsten M. Schlaeger posted to stem_cell differentiation by balabu on 2009-11-06 20:00:40 as
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to regulatory_landscape development by balabu on 2009-11-05 13:53:55 as along with 10 people emptyhb toszko roys inesdesantiago fenghezi iskathy djkt megraw TRHvidsten pedrobeltrao
	DNA methylation is a guardian of stem cell self-renewal and multipotency [My Copy] Nat Genet, Vol. 41, No. 11. (01 November 2009), pp. 1164-1166. by Laurraine-Marcelle Gereige, Hanna K. A. Mikkola posted to stem_cell epigenetics by balabu on 2009-10-28 18:57:48 as
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to network by balabu on 2009-10-22 20:27:51 as along with 69 people and 9 groups nurban ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim GEB Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
	A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 442-446. by Paul J. Choi, Long Cai, Kirsten Frieda, X. Sunney Xie posted to noise by balabu on 2009-10-22 20:26:23 as along with 11 people and 1 group yyfwuhan pkm stasaki jbhiatt lflorez jonesn cactus alexknight margaritis jjray samjlord moernerlab
	Stochastic switching as a survival strategy in fluctuating environments [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475. by Murat Acar, Jerome T. Mettetal, Alexander van Oudenaarden posted to oscillation noise by balabu on 2009-10-22 20:24:41 as along with 13 people and 1 group lbnc stefanjanusz A_Olympia operon jjray gokhan dbikard margaritis bootsy qwermish fjvico osilander brianb GEB
	Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better [My Copy] PLoS Biol, Vol. 2, No. 12. (14 December 2004), e439. by Joel E. Cohen posted to philosophical by balabu on 2009-10-22 20:24:00 as along with 42 people and 14 groups pick600 jsvoboda tkf jorisslob arne beete rklancer BioGeek betainverse korakot cito pete hamish karbak A_Olympia beccaf22 rmj001 devin dsquared nozeresc DineshGaitonde macowell marimo bpb grzegorz cmmorel bayesian piscinero marcius eckart_bindewald eweaver wnpx dullhunk caporaso mmt xinian jrbanga bpcusack quianominorleo jn221 grahamc joseph_x_zhou dIEMoSIRIS Philosophy_of_Information Blog_and_Wiki_Research Fluid-Mechanics-and-Thermal-Science-Research MathBio EisenLab Computational_Systems_Biology XMLDataManagement biomedical-nlp BUiGEM BioinfoCIPF SGU-CIPF bioNetwork_sysBio biophysics
	Enhancement of cellular memory by reducing stochastic transitions [My Copy] Nature, Vol. 435, No. 7039., pp. 228-232. by Murat Acar, Attila Becskei, Alexander v. van Oudenaarden posted to noise network by balabu on 2009-10-22 20:23:01 as along with 7 people and 1 group jjray rklancer crmind balicea dbikard mhucka kfm9876 SynBioSys
	Programming gene expression with combinatorial promoters. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Robert Sidney S. Cox, Michael G. Surette, Michael B. Elowitz posted to synthetic network by balabu on 2009-10-22 20:22:25 as along with 16 people and 3 groups Synthetic_Biology_Literature Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to translation by balabu on 2009-10-22 20:22:09 as along with 32 people and 1 group yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela polivares rpatward lizbiogen jdbowes operon jasontsai absterga jbhiatt jjray kshundyak zwang friendpine BergmanLab
	Precise Temporal Modulation in the Response of the SOS DNA Repair Network in Individual Bacteria [My Copy] PLoS Biol, Vol. 3, No. 7. (21 June 2005), e238. by Nir Friedman, Shuki Vardi, Michal Ronen, Uri Alon, Joel Stavans posted to timing noise network by balabu on 2009-10-22 20:21:44 as along with 9 people and 1 group dbikard yyfwuhan jjray cambray rklancer madhadron nickluscombe comb RyanGray EBI-regulation
	Noise Propagation in Gene Networks [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969. by Juan M. Pedraza, Alexander van Oudenaarden posted to noise by balabu on 2009-10-22 20:21:06 as along with 17 people boko4ikameto winterschlaefer cjryan jimeet rklancer snuppepuppan JKelly555 samal madhadron jiyu mhucka timflutre margaritis brianb suizan jiny dylanwalker
	Negative autoregulation speeds the response times of transcription networks. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793. by N. Rosenfeld, M. B. Elowitz, U. Alon posted to network by balabu on 2009-10-22 20:20:33 as along with 5 people Antoine_Decrulle rklancer jjray bayesian margaritis
	Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops [My Copy] Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129. by Tony Y. Tsai, Yoon S. Choi, Wenzhe Ma, Joseph R. Pomerening, Chao Tang, James E. Ferrell posted to oscillation network by balabu on 2009-10-22 20:20:06 as along with 11 people and 3 groups jjray jasonpark1 t_richardson agonzale margaritis madhadron Borelli kentsis caseybrown stringertheory dbikard Synthetic Biology BP205 SynBioSys
	A synthetic oscillatory network of transcriptional regulators. [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338. by M. B. Elowitz, S. Leibler posted to synthetic by balabu on 2009-10-22 20:19:30 as along with 22 people and 1 group stharward dbikard dannya222 abhishek_tiwari adamnellis sjayanthi jasonpark1 cjryan ClaireFB mattions rklancer dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar Borelli BP205
	Regulation of noise in the expression of a single gene. [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 69-73. by E. M. Ozbudak, M. Thattai, I. Kurtser, A. D. Grossman, A. van Oudenaarden posted to noise by balabu on 2009-10-22 20:19:11 as along with 14 people pkm roys rklancer rahmilale dbikard mhucka margaritis kfm9876 vladimirov jiny dylanwalker klo austin jjray
	Stochastic Gene Expression in a Single Cell [My Copy] Science, Vol. 297, No. 5584. (16 August 2002), pp. 1183-1186. by Michael B. Elowitz, Arnold J. Levine, Eric D. Siggia, Peter S. Swain posted to noise by balabu on 2009-10-22 20:18:51 as along with 23 people and 2 groups struanmurray yyfwuhan dbikard pkm cjryan ClaireFB wilvc madhadron cottrell mmt litam mhucka timflutre margaritis roland_ewald ptupper mjoach tvdbulck jiny balicea dylanwalker jjray austin dIEMoSIRIS MoSi-Rostock
	Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 512-522. by Tolga Çaatay, Marc Turcotte, Michael B. Elowitz, Jordi Garcia-Ojalvo, Gürol M. Süel posted to noise network differentiation by balabu on 2009-10-22 20:18:17 as along with 1 person mstumpf
	Systems biology of stem cell fate and cellular reprogramming [My Copy] Nat Rev Mol Cell Biol, Vol. 10, No. 10. (09 September 2009), pp. 672-681. by Ben D. MacArthur, Avi Ma'ayan, Ihor R. Lemischka posted to tristable stem_cell by balabu on 2009-09-25 19:02:26 as along with 1 person leliavski
	Developmental biology: Rise of the source\|[ndash]\|sink model [My Copy] Nature, Vol. 461, No. 7263. (23 September 2009), pp. 480-481. by Alexander F. Schier, Daniel Needleman posted to spatial development by balabu on 2009-09-24 14:00:51 as
	Noise Management by Molecular Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (18 September 2009), e1000506. by Frank J. Bruggeman, Nils Blüthgen, Hans V. Westerhoff posted to noise by balabu on 2009-09-19 20:27:30 as along with 4 people josepe bayesian jjray scmelton
	Engineering the Salmonella type III secretion system to export spider silk monomers. [My Copy] Molecular systems biology, Vol. 5 (15 September 2009) by Daniel M. Widmaier, Danielle Tullman-Ercek, Ethan A. Mirsky, et al.Rena Hill, Sridhar Govindarajan, Jeremy Minshull, Christopher A. Voigt posted to synthetic by balabu on 2009-09-15 18:55:56 as along with 2 people yyfwuhan grahamc
	Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000268. by Vijay Chickarmane, Tariq Enver, Carsten Peterson posted to differentiation stem_cell tristable by balabu on 2009-07-30 21:03:04 as along with 2 people samubernard akraemer
	Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells. [My Copy] PLoS biology, Vol. 7, No. 7. (7 July 2009), e1000149. by Tibor Kalmar, Chea Lim, Penelope Hayward, et al.Silvia Muñoz-Descalzo, Jennifer Nichols, Jordi Garcia-Ojalvo, Alfonso Martinez Arias posted to noise stem_cell by balabu on 2009-07-07 14:13:49 as along with 2 people and 1 group paszkows biomcgary cube_and_beyond
	Imaging stem-cell-driven regeneration in mammals [My Copy] Nature, Vol. 453, No. 7193. (14 May 2008), pp. 345-351. by Timm Schroeder posted to imaging stem_cell by balabu on 2009-06-16 15:16:14 as
	Spatio-Temporal Dynamics of Yeast Mitochondrial Biogenesis: Transcriptional and Post-Transcriptional mRNA Oscillatory Modules [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (12 June 2009), e1000409. by Gaëlle Lelandais, Yann Saint-Georges, Colette Geneix, Liza Al-Shikhley, Geneviève Dujardin, Claude Jacq posted to oscillation yeast by balabu on 2009-06-12 18:00:32 as along with 1 person neils
	Dynamics of the interlocked positive feedback loops explaining the robust epigenetic switching in Candida albicans [My Copy] Journal of Theoretical Biology, Vol. 258, No. 1. (07 May 2009), pp. 71-88. by K. Sriram, Sylvain Soliman, François Fages posted to tristable by balabu on 2009-06-06 22:23:56 as along with 1 person schwartzjmc
	Diversity-based, model-guided construction of synthetic gene networks with predicted functions [My Copy] Nat Biotech, Vol. 27, No. 5. (19 May 2009), pp. 465-471. by Tom Ellis, Xiao Wang, James J. Collins posted to synthetic by balabu on 2009-05-11 15:39:48 as along with 7 people boko4ikameto druvus dbikard jvb jbhiatt hryk dswan
	A quantitative estimation of the global translational activity in logarithmically growing yeast cells [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Tobias von der Haar posted to translation whole_yeast by balabu on 2009-04-22 22:12:54 as along with 1 person aramata
	A MicroRNA Imparts Robustness against Environmental Fluctuation during Development [My Copy] Cell, Vol. 137, No. 2. (17 April 2009), pp. 273-282. by Xin Li, Justin J. Cassidy, Catherine A. Reinke, Stephen Fischboeck, Richard W. Carthew posted to feedback modeling stem_cell stochastic by balabu on 2009-04-22 19:13:17 as along with 4 people and 2 groups heliopais avilella valeriehilgers daforerog microRNA Ensembl Compara citations
	Canalization of Gene Expression and Domain Shifts in the <italic>Drosophila</italic> Blastoderm by Dynamical Attractors [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000303. by Manu, Svetlana Surkova, Alexander V. Spirov, et al.Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz posted to fly modeling stem_cell stochastic by balabu on 2009-04-01 17:55:53 as along with 2 people JustinCrocker dolchan
	Capturing pluripotency. [My Copy] Cell, Vol. 132, No. 4. (22 February 2008), pp. 532-536. by J. Silva, A. Smith posted to stem_cell stochastic by balabu on 2009-03-31 17:38:07 as along with 1 person inesdesantiago
	Cell fates as high-dimensional attractor states of a complex gene regulatory network. [My Copy] Physical review letters, Vol. 94, No. 12. (1 April 2005) by S. Huang, G. Eichler, Y. Bar-Yam, D. E. Ingber posted to differentiation stem_cell stochastic by balabu on 2009-02-27 18:47:10 as along with 1 person jjray
	Multistable and multistep dynamics in neutrophil differentiation [My Copy] BMC Cell Biology, Vol. 7, No. 1. (2006) by Hannah Chang, Philmo Oh, Donald Ingber, Sui Huang posted to differentiation stem_cell by balabu on 2009-02-27 18:45:35 as along with 3 people jjray mikaelhuss john_ardelius
	Cross-repressive interactions of identity genes are essential for proper specification of cardiac and muscular fates in Drosophila [My Copy] Development, Vol. 129, No. 4. (15 February 2002), pp. 1037-1047. by Teresa Jagla, Yannick Bidet, Jean P. Da Ponte, Bernard Dastugue, Krzysztof Jagla posted to stem_cell tristable by balabu on 2009-02-27 16:22:50 as
	The fog-3 gene and regulation of cell fate in the germ line of Caenorhabditis elegans. [My Copy] Genetics, Vol. 139 (1995), pp. 561-577. by R. E. Ellis, J. E. Kimble posted to stem_cell tristable by balabu on 2009-02-27 16:21:51 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Epigenetic reprogramming and induced pluripotency [My Copy] Development, Vol. 136, No. 4. (15 February 2009), pp. 509-523. by Konrad Hochedlinger, Kathrin Plath posted to stem_cell stochastic by balabu on 2009-02-26 14:57:06 as
	Nodal signalling is involved in leftright asymmetry in snails [My Copy] Nature (21 December 2008) by Cristina Grande, Nipam H. Patel posted to asymmetry evolutioin by balabu on 2009-02-19 03:04:30 as
	Regulation of the bacterial cell cycle by an integrated genetic circuit [My Copy] Nature (29 November 2006) by Emanuele G. Biondi, Sarah J. Reisinger, Jeffrey M. Skerker, et al.Muhammad Arif, Barrett S. Perchuk, Kathleen R. Ryan, Michael T. Laub posted to synthetic by balabu on 2009-02-18 15:11:03 as along with 3 people balajis aswin cjeans
	Experimental tests of the roles of adaptation, chance, and history in evolution [My Copy] Science, Vol. 267, No. 5194. (6 January 1995), pp. 87-90. by M. Travisano, J. A. Mongold, A. F. Bennett, R. E. Lenski posted to evolutioin by balabu on 2009-02-17 17:34:35 as along with 1 person jjray
	Epigenetic regulation and the variability of gene expression [My Copy] Nature Genetics, Vol. 40, No. 2. (29 January 2008), pp. 141-147. by Jung K. Choi, Young-Joon Kim posted to noise stochastic by balabu on 2009-02-11 20:28:37 as along with 7 people hagechouchin443 Scis0000002 inesdesantiago bootsy epigenetics rschulz maralena
	Is Genetic Evolution Predictable? [My Copy] Science, Vol. 323, No. 5915. (6 February 2009), pp. 746-751. by David L. Stern, Virginie Orgogozo posted to evolutioin by balabu on 2009-02-09 19:58:21 as along with 12 people and 1 group emptyhb Scis0000002 anphony provero kshundyak pkonings Zephyrus jjray kaniko RamuAnandakrishnan zwang phoenixzxl R.E.A.D
	The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity [My Copy] Science, Vol. 323, No. 5915. (6 February 2009), pp. 741-746. by Christophe Fraser, Eric J. Alm, Martin F. Polz, Brian G. Spratt, William P. Hanage posted to evolutioin by balabu on 2009-02-09 16:25:42 as along with 16 people and 1 group marinard pkm kinestetika katholt jlgreen Katje dbikard anphony provero pkapoorvijay druvus kshundyak skembel ellakat jjray yonatanf iSEEM
	Genetic Dissection of Transcriptional Regulation in Budding Yeast [My Copy] Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755. by Rachel B. Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak posted to evolutioin whole_yeast by balabu on 2009-02-04 14:54:47 as along with 10 people and 3 groups RMGraze JAShapiro brant dpollard adepace oannes raiyar lp2 jo_davies mimulus_99 EisenLab Regulomics_UCHSC steinmetzlab
	THE GENETICS AND EVOLUTION OF FLUCTUATING ASYMMETRY [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 36, No. 1. (2005), pp. 1-21. by Larry J. Leamy, Christian P. Klingenberg posted to asymmetry development evolutioin stochastic by balabu on 2009-01-22 20:40:59 as
	The evolution of hierarchical gene regulatory networks [My Copy] Nat Rev Genet, Vol. 10, No. 2. (February 2009), pp. 141-148. by Douglas H. Erwin, Eric H. Davidson posted to evolutioin synthetic by balabu on 2009-01-16 16:40:55 as along with 10 people PabloMarin Scis0000002 erel10 ynaito dakelley wangbo natstreet druvus balicea Borelli
	Single-RNA counting reveals alternative modes of gene expression in yeast [My Copy] Nat Struct Mol Biol, Vol. 15, No. 12. (December 2008), pp. 1263-1271. by Daniel Zenklusen, Daniel R. Larson, Robert H. Singer posted to stochastic yeast by balabu on 2009-01-05 16:43:52 as along with 1 person burnettjc
	The Evolution of Combinatorial Gene Regulation in Fungi [My Copy] PLoS Biology, Vol. 6, No. 2. (1 February 2008), e38. by Brian B. Tuch, David J. Galgoczy, Aaron D. Hernday, Hao Li, Alexander D. Johnson posted to evolutioin yeast by balabu on 2008-12-19 14:22:31 as along with 3 people and 1 group stajich biomcgary cmzmasek Mycology
	Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5875. (25 April 2008), pp. 539-543. by Tom Walsh, Jon M. McClellan, Shane E. McCarthy, et al.Anjené M. Addington, Sarah B. Pierce, Greg M. Cooper, Alex S. Nord, Mary Kusenda, Dheeraj Malhotra, Abhishek Bhandari, Sunday M. Stray, Caitlin F. Rippey, Patricia Roccanova, Vlad Makarov, B. Lakshmi, Robert L. Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E. Eichler, Paul S. Meltzer, Stanley F. Nelson, Andrew B. Singleton, Ming K. Lee, Judith L. Rapoport, Mary-Claire C. King, Jonathan Sebat posted to development disease neuroscience by balabu on 2008-12-19 14:18:09 as along with 13 people and 1 group daforerog jbhiatt yun_li mbolding waszak sekulerlab GustavoLacerda MWagner applebyb giovanni djkt lisa1 renatomilani VisionLab
	Functional organisation of Escherichia coli transcriptional regulatory network [My Copy] Journal of Molecular Biology, Vol. 381, No. 1. (1 August 2008), pp. 238-247. by Agustino Martínez-Antonio, Sarath C. Janga, Denis Thieffry posted to evolutioin network by balabu on 2008-12-16 23:13:43 as along with 2 people jjray maralena

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noise	69
stochastic	40
evolutioin	26
spatial	23
stem_cell	20
yeast	19
synthetic	18
bistable	15
mapk	13
network	13
differentiation	10
microrna	9
modeling	9
toggle	9
algorithm	8
collins	8
general_model	8
oscillation	8
whole_yeast	8
development	7
nuclear	7
signaling	7
translation	6
elowitz	5
fly	5
gfp	5
timing	5
tristable	5
celldivision	4
neuroscience	4
noise_frequency	4
oudenaarden	4
wavelet	4
worm	4
aging-variation	3
asymmetry	3
cancer	3
cys	3
massspec	3
paulsson	3
bottleneck	2
cellbio	2
chemotaxis	2
crosstalk	2
disease	2
dynamics	2
ecoli	2
epigenetics	2
exptools	2
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kholodenko	1
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microfluidics	1
philosophical	1
queue	1
regulatory_landscape	1
schaffer_arkin	1
sde	1
software	1
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sysbio	1
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balabu's library 280 articles Export

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