balajis's nsf2007 [29 articles] Export

Recent papers added to balajis's library classified by the tag nsf2007. You can also see everyone's nsf2007.

	Creation and implications of a phenome-genome network. [My Copy] Nature biotechnology, Vol. 24, No. 1. (10 January 2006), pp. 55-62. by Atul J. Butte, Isaac S. Kohane posted to nsf2007 by balajis on 2007-03-05 16:55:28 as along with 10 people and 2 groups bertelsen daforerog BioGeek bpb okarsligil wnpx tag elsiatcase eukfn guhjy Bioinformatics metric_embeddings
	An Integrative Genomic Approach to Uncover Molecular Mechanisms of Prokaryotic Traits [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e159. by Yang Liu, Jianrong Li, Lee Sam, Chern-Sing Goh, Mark Gerstein, Yves A. Lussier posted to nsf2007 by balajis on 2007-03-05 16:55:01 as along with 2 people aswin totolee
	A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes [My Copy] Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 109-115. by Kam Jim, Kush Parmar, Mona Singh, Saeed Tavazoie posted to nsf2007 by balajis on 2007-03-05 16:54:19 as
	'Conserved hypothetical' proteins: prioritization of targets for experimental study. [My Copy] Nucleic Acids Res, Vol. 32, No. 18. (2004), pp. 5452-5463. by M. Y. Galperin, E. V. Koonin posted to nsf2007 by balajis on 2007-03-05 16:52:32 as along with 3 people and 2 groups ana dayjm bakakaj structural_bioinformatics Bioinformatics
	STRING 7--recent developments in the integration and prediction of protein interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by C. von Mering, L. J. Jensen, M. Kuhn, et al.S. Chaffron, T. Doerks, B. Krüger, B. Snel, P. Bork posted to nsf2007 by balajis on 2007-03-05 16:50:25 as along with 16 people anf dragonrez druvus Cortel wenhui chad_davis guhjy kuhn fisherp raiyar massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
	Identification and characterization of novel competence genes comA and exbB involved in natural genetic transformation of Pseudomonas stutzeri. [My Copy] Res Microbiol, Vol. 152, No. 5. (June 2001), pp. 451-460. by S. Graupner, W. Wackernagel posted to nsf2007 by balajis on 2007-03-05 15:57:39 as along with 1 person nuke2005
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted to nsf2007 by balajis on 2007-03-05 14:26:26 as along with 34 people and 3 groups JeremyZucker daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
	The comprehensive updated regulatory network of Escherichia coli K-12. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (6 January 2006) by Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, et al.Martin Peralta-Gil, Monica I. Penaloza-Spinola, Agustino Martinez-Antonio, Peter D. Karp, Julio Collado-Vides posted to nsf2007 by balajis on 2007-03-03 23:16:10 as along with 2 people discreteonyxorb dquest
	A genomic perspective on protein families. [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 631-637. by R. L. Tatusov, E. V. Koonin, D. J. Lipman posted to nsf2007 by balajis on 2007-03-03 23:15:32 as along with 7 people coela bjorns nuke2005 AaronDarling ruvido ninch Ema
	The UCSC genome browser database: update 2007. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by R. M. Kuhn, D. Karolchik, A. S. Zweig, et al.H. Trumbower, D. J. Thomas, A. Thakkapallayil, C. W. Sugnet, M. Stanke, K. E. Smith, A. Siepel, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, J. S. Pedersen, F. Hsu, A. S. Hinrichs, R. A. Harte, M. Diekhans, H. Clawson, G. Bejerano, G. P. Barber, R. Baertsch, D. Haussler, W. J. Kent posted to nsf2007 by balajis on 2007-03-03 23:15:09 as along with 2 people miguel olympos
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong D. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted to nsf2007 by balajis on 2007-03-03 23:14:05 as along with 29 people and 2 groups colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
	Towards a genome-based taxonomy for prokaryotes. [My Copy] J Bacteriol, Vol. 187, No. 18. (September 2005), pp. 6258-6264. by K. T. Konstantinidis, J. M. Tiedje posted to nsf2007 by balajis on 2007-03-03 23:10:40 as along with 2 people and 1 group treangen gelack iSEEM
	Bergey's Manual of Systematic Bacteriology, Vol. 2 (Parts A, B & C; Three-Volume Set) [My Copy] (25 August 2005) by G. Garrity posted to nsf2007 by balajis on 2007-03-03 23:09:25 as
	The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by J. R. Cole, B. Chai, R. J. Farris, et al.Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, G. M. Garrity, J. M. Tiedje posted to nsf2007 by balajis on 2007-03-03 22:33:48 as along with 1 person wenhan
	Estimating the number of clusters in a dataset via the gap statistic [My Copy] (2000) by R. Tibshirani, G. Walther, T. Hastie posted to nsf2007 by balajis on 2007-03-03 22:32:31 as along with 6 people saket archroad aviad_work sugarexpletive ykuoka frohike
	The ORFanage: an ORFan database. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by N. Siew, Y. Azaria, D. Fischer posted to nsf2007 by balajis on 2007-03-03 22:26:54 as
	The Biomolecular Interaction Network Database and related tools 2005 update. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by C. Alfarano, C. E. Andrade, K. Anthony, et al.N. Bahroos, M. Bajec, K. Bantoft, D. Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, I. Donaldson, D. Dorairajoo, M. J. Dumontier, M. R. Dumontier, V. Earles, R. Farrall, H. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, R. Haw, A. Hrvojic, L. Hurrell, R. Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, B. Parker, G. Pintilie, R. Pirone, J. J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, K. Snyder, R. Stasiuk, D. Strumpf, B. Tuekam, S. Tao, Z. Wang, M. White, R. Willis, C. Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, S. Zhang, K. Zheng, T. Pawson, B. F. Ouellette, C. W. Hogue posted to nsf2007 by balajis on 2007-03-03 22:24:01 as along with 7 people and 3 groups hardi alaninmcr yas zlu frohike dagmar dragonrez T_lab dIEMoSIRIS compneur
	DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 303-305. by Ioannis Xenarios, Lukasz Salwínski, Xiaoqun Joyce J. Duan, Patrick Higney, Sul-Min M. Kim, David Eisenberg posted to nsf2007 by balajis on 2007-03-03 22:23:40 as along with 6 people chica mgomes nuke2005 wnpx gurkanbebek carlk
	Cell type-specific phosphorylation and proteolysis of a transcriptional regulator controls the G1-to-S transition in a bacterial cell cycle. [My Copy] Cell, Vol. 90, No. 3. (8 August 1997), pp. 415-424. by I. J. Domian, K. C. Quon, L. Shapiro posted to nsf2007 by balajis on 2007-03-03 22:22:02 as
	Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data [My Copy] In Proc. 18th International Conf. on Machine Learning (2001), pp. 282-289. by John Lafferty, Andrew Mccallum, Fernando Pereira posted to nsf2007 by balajis on 2007-03-03 22:19:35 as along with 26 people and 5 groups kabus pprett ttylenda jkominek krisl mehrbod davidr halacsy unnonouno buescher76 wcohen sids j3xucite knmnyn student_t dwf bundschu johnkork koji_matsuda mkolar markusd vlachmore kohei-h oyen jmackay idornescu Information Extraction oktave-labs generif_paper Statistical Machine Learning WLV-RGCL
	Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by C. J. Wolfe, I. S. Kohane, A. J. Butte posted to nsf2007 by balajis on 2007-03-03 22:15:10 as along with 3 people maryee srp33 dragonrez
	Detecting conserved interaction patterns in biological networks. [My Copy] J Comput Biol, Vol. 13, No. 7. (September 2006), pp. 1299-1322. by M. Koyutürk, Y. Kim, S. Subramaniam, W. Szpankowski, A. Grama posted to nsf2007 by balajis on 2007-03-03 22:13:14 as along with 5 people and 1 group sergiun babakap cswinburne massivemayhem mirzazadeh Bioinformatics
	Integrated Protein Interaction Networks for 11 Microbes [My Copy] : Research in Computational Molecular Biology (2006), pp. 1-14. by Balaji S. Srinivasan, Antal F. Novak, Jason A. Flannick, Serafim Batzoglou, Harley H. Mcadams posted to nsf2007 by balajis on 2007-03-03 22:10:26 as along with 2 people nedwards carlk
	The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. [My Copy] Nucleic acids research, Vol. 33, No. 17. (2005), pp. 5691-5702. by Ross Overbeek, Tadhg Begley, Ralph M. Butler, et al.Jomuna V. Choudhuri, Han-Yu Y. Chuang, Matthew Cohoon, Valérie de Crécy-Lagard, Naryttza Diaz, Terry Disz, Robert Edwards, Michael Fonstein, Ed D. Frank, Svetlana Gerdes, Elizabeth M. Glass, Alexander Goesmann, Andrew Hanson, Dirk Iwata-Reuyl, Roy Jensen, Neema Jamshidi, Lutz Krause, Michael Kubal, Niels Larsen, Burkhard Linke, Alice C. McHardy, Folker Meyer, Heiko Neuweger, Gary Olsen, Robert Olson, Andrei Osterman, Vasiliy Portnoy, Gordon D. Pusch, Dmitry A. Rodionov, Christian Rückert, Jason Steiner, Rick Stevens, Ines Thiele, Olga Vassieva, Yuzhen Ye, Olga Zagnitko, Veronika Vonstein posted to nsf2007 by balajis on 2007-03-03 22:01:09 as along with 5 people nyyu coela mbeeby barriot jwortman
	SWISS-2DPAGE, ten years later [My Copy] PROTEOMICS, Vol. 4, No. 8. (2004), pp. 2352-2356. by Christine Hoogland, Khaled Mostaguir, Jean-Charles Sanchez, Denis F. Hochstrasser, Ron D. Appel posted to nsf2007 by balajis on 2007-03-03 20:08:54 as along with 1 person brianb
	IntAct--open source resource for molecular interaction data. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by S. Kerrien, Y. Alam-Faruque, B. Aranda, et al.I. Bancarz, A. Bridge, C. Derow, E. Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, L. Montecchi-Palazzi, S. Orchard, J. Risse, K. Robbe, B. Roechert, D. Thorneycroft, Y. Zhang, R. Apweiler, H. Hermjakob posted to nsf2007 by balajis on 2007-03-02 23:30:04 as along with 2 people Cortel massivemayhem
	Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales. [My Copy] Genome Biol, Vol. 3, No. 12. (2002) by B. Dombrecht, K. Marchal, J. Vanderleyden, J. Michiels posted to nsf2007 by balajis on 2007-03-02 23:20:46 as along with 1 person and 1 group adria TNT
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to nsf2007 by balajis on 2006-12-31 23:29:22 as along with 22 people and 2 groups cerca hagechouchin443 aelef Robinder lfriedl opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to nsf2007 thesis by balajis on 2006-04-24 10:28:32 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc

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balajis's nsf2007 [29 articles] Export

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