baldigroup's library 38 articles Export

	A Burkholderia pseudomallei protein microarray reveals serodiagnostic and cross-reactive antigens [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 32. (11 August 2009), pp. 13499-13504. by Philip L. Felgner, Matthew A. Kayala, Adam Vigil, et al.Chad Burk, Rie Nakajima-Sasaki, Jozelyn Pablo, Douglas M. Molina, Siddiqua Hirst, Janet S. W. Chew, Dongling Wang, Gladys Tan, Melanie Duffield, Ron Yang, Julien Neel, Narisara Chantratita, Greg Bancroft, Ganjana Lertmemongkolchai, D. Huw Davies, Pierre Baldi, Sharon Peacock, Richard W. Titball posted to proteinmicroarray by baldigroup on 2009-08-19 00:53:16 as
	A genome-wide proteome array reveals a limited set of immunogens in natural infections of humans and white-footed mice with Borrelia burgdorferi. [My Copy] Infection and immunity, Vol. 76, No. 8. (August 2008), pp. 3374-3389. by A. G. Barbour, A. Jasinskas, M. A. Kayala, et al.D. H. Davies, A. C. Steere, P. Baldi, P. L. Felgner posted to microarray proteinmicroarray by baldigroup on 2009-04-02 17:34:58 as
	Lineage specificity of gene expression patterns. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 17. (27 April 2004), pp. 6508-6513. by Y. Kluger, D. P. Tuck, J. T. Chang, et al.Y. Nakayama, R. Poddar, N. Kohya, Z. Lian, A. Ben Nasr, H. R. Halaban, D. S. Krause, X. Zhang, P. E. Newburger, S. M. Weissman posted to microarray by baldigroup on 2009-04-01 21:19:47 as along with 4 people strands balicea yuval klo
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted to microarray by baldigroup on 2009-04-01 20:49:04 as along with 34 people and 3 groups antonkratz potatongy drungows colmryan jplatig rsaito Neeperando daforerog karinlag ronglais operon Borelli pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki jo_davies tvdbulck bozdagd roys kdl Bioinformatics BUiGEM
	Quality assessment and data analysis for microRNA expression arrays. [My Copy] Nucleic acids research, Vol. 37, No. 2. (1 February 2009), e17. by D. Sarkar, R. Parkin, S. Wyman, et al.A. Bendoraite, C. Sather, J. Delrow, A. K. Godwin, C. Drescher, W. Huber, R. Gentleman, M. Tewari posted to no-tag by baldigroup on 2009-02-18 02:18:40 as along with 6 people and 2 groups jfr Stew nuin ptrobajo guhjy giovenko microRNA Bioinformatics - CRUK
	Normalization and experimental design for ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (25 June 2007), 219. by Shouyong Peng, Artyom A. Alekseyenko, Erica Larschan, Mitzi I. Kuroda, Peter J. Park posted to chip-chip microarray normalization by baldigroup on 2008-08-27 21:20:20 as along with 7 people and 2 groups rschulz siebert guhjy kengg Stew yevishere caseybrown EisenLab Plantandetc
	A variance-stabilizing transformation for gene-expression microarray data. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by B. P. Durbin, J. S. Hardin, D. M. Hawkins, D. M. Rocke posted to microarray normalization by baldigroup on 2008-08-08 19:07:14 as along with 4 people dswan GeeSharpMinor j3xucite schuylrp
	DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2026-2034. by D. P. Kreil, N. A. Karp, K. S. Lilley posted to normalization by baldigroup on 2008-08-08 00:46:43 as along with 3 people and 1 group neils Fsilvestre urbo ecotoxurbo
	Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data [My Copy] Journal of Computational Biology, Vol. 7, No. 6. (December 2000), pp. 805-817. by Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, Leroy E. Hood posted to microarray normalization proteinmicroarray by baldigroup on 2008-03-24 13:29:24 as along with 1 person poirel
	Parameter estimation for the calibration and variance stabilization of microarray data [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 2, No. 1. (April 2003) by Wolfgang Huber, Anja von Heydebreck, Holger Sueltmann, Annemarie Poustka, Martin Vingron posted to microarray normalization proteinmicroarray by baldigroup on 2008-03-24 10:45:37 as
	A Model for Measurement Error for Gene Expression Arrays [My Copy] J Comput Biol, Vol. 8, No. 6. (2001), pp. 557-569. by D. Rocke, B. Durbin posted to microarray normalization proteinmicroarray by baldigroup on 2008-03-20 17:30:40 as along with 1 person joule
	Approximate variance-stabilizing transformations for gene-expression microarray data [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 966-972. by David M. Rocke, Blythe Durbin posted to microarray normalization proteinmicroarray by baldigroup on 2008-03-20 17:19:20 as
	ROCR: visualizing classifier performance in R [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3940-3941. by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted to auc evaluation machinelearning metrics roc rtool by baldigroup on 2008-03-20 04:53:53 as along with 4 people and 2 groups megraw ana balajis chad_davis structural_bioinformatics Bioinformatics
	Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 547-552. by D. H. Davies, X. Liang, J. E. Hernandez, et al.A. Randall, S. Hirst, Y. Mu, K. M. Romero, T. T. Nguyen, M. Kalantari-Dehaghi, S. Crotty, P. Baldi, L. P. Villarreal, P. L. Felgner posted to proteinmicroarray by baldigroup on 2008-03-17 00:03:50 as
	Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies. [My Copy] Methods Enzymol, Vol. 411 (2006), pp. 282-311. by T. E. Royce, J. S. Rozowsky, N. M. Luscombe, et al.O. Emanuelsson, H. Yu, X. Zhu, M. Snyder, M. B. Gerstein posted to microarray proteinmicroarray by baldigroup on 2008-03-16 22:51:34 as along with 1 person surajitray
	From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i508-518. by Suman Sundaresh, Arlo Randall, Berkay Unal, et al.Jeannine M. Petersen, John T. Belisle, Gill, Melanie Duffield, Richard W. Titball, Huw D. Davies, Philip L. Felgner, Pierre Baldi posted to microarray proteomics by baldigroup on 2008-03-03 03:48:06 as
	BindingDB: a web-accessible database of experimentally determined protein–ligand binding affinities [My Copy] Nucleic Acids Research, Vol. 35, No. 00. (January 2007), pp. D198-D201. by Tiqing Liu, Yuhmei Lin, Xin Wen, Robert N. Jorissen, Michael K. Gilson posted to chemdb cheminformatics chemoinformatics database by baldigroup on 2008-02-07 18:16:43 as
	The Binding Database: data management and interface design. [My Copy] Bioinformatics, Vol. 18, No. 1. (January 2002), pp. 130-139. by X. Chen, Y. Lin, M. Liu, M. K. Gilson posted to chemdb cheminformatics chemistry chemoinformatics database by baldigroup on 2008-02-07 17:20:11 as along with 1 person blackbart
	Identification of humoral immune responses in protein microarrays using DNA microarray data analysis techniques. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1760-1766. by S. Sundaresh, D. L. Doolan, S. Hirst, et al.Y. Mu, B. Unal, D. H. Davies, P. L. Felgner, P. Baldi posted to microarray proteomics by baldigroup on 2008-01-27 23:15:54 as along with 1 person and 2 groups breden FAB-lab SFUAntibodyResearch
	Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments. [My Copy] BMC bioinformatics, Vol. 7 (19 December 2006), 538. by Maureen A. Sartor, Craig R. Tomlinson, Scott C. Wesselkamper, Siva Sivaganesan, George D. Leikauf, Mario Medvedovic posted to microarray by baldigroup on 2008-01-27 21:37:59 as along with 3 people guhjy jfr shigepong
	A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes [My Copy] Bioinformatics, Vol. 17, No. 6. (1 June 2001), pp. 509-519. by Pierre Baldi, Anthony D. Long posted to microarray by baldigroup on 2008-01-27 21:31:06 as along with 10 people and 1 group dandaman gstiglic tvdbulck textoris lyongu dquest daniel_quest jeremymiller shigepong jo_davies GeschwindLab
	Variance stabilization applied to microarray data calibration and to the quantification of differential expression [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S96-104. by Wolfgang Huber, Anja von Heydebreck, Holger Sultmann, Annemarie Poustka, Martin Vingron posted to microarray normalization by baldigroup on 2008-01-27 21:22:40 as along with 2 people humburg fpattyn
	Ratio-based decisions and the quantitative analysis of cDNA microarray images [My Copy] Journal of Biomedical Optics, Vol. 2, No. 4. (1997), pp. 364-374. by Yidong Chen, Edward R. Dougherty, Michael L. Bittner posted to microarray normalization by baldigroup on 2008-01-23 20:05:31 as along with 1 person akdess
	SMILES 2. Algorithm for Generation of Unique SMILES Notation [My Copy] Journal of Chemical Information and Computer Science, Vol. 29, No. 2. (1989), pp. 97-101. by David Weininger, Arthur Weininger, Joseph L. Weininger posted to chemoinformatics smiles by baldigroup on 2008-01-15 18:13:27 as
	The Generation of a Unique Machine Description for Chemical Structures-A Technique Developed at Chemical Abstracts Service [My Copy] Journal of Chemical Documentation, Vol. 5, No. 2. (1965), pp. 107-113. by H. L. Morgan posted to cheminformatics fingerprint by baldigroup on 2008-01-15 18:06:03 as
	Effectiveness of graph-based and fingerprint-based similarity measures for virtual screening of 2D chemical structure databases [My Copy] Journal of Computer-Aided Molecular Design, Vol. 16, No. 1. (1 January 2002), pp. 59-71. by John W. Raymond, Peter Willett posted to chemistry chemoinformatics fingerprint by baldigroup on 2008-01-15 17:58:38 as
	On the Properties of Bit String-Based Measures of Chemical Similarity [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 38, No. 3. (1 May 1998), pp. 379-386. by Darren R. Flower posted to chemistry chemoinformatics fingerprint by baldigroup on 2008-01-15 17:55:56 as along with 1 person stharward
	A training algorithm for optimal margin classifiers [My Copy] In COLT '92: Proceedings of the fifth annual workshop on Computational learning theory (1992), pp. 144-152. by Bernhard E. Boser, Isabelle M. Guyon, Vladimir N. Vapnik posted to machinelearning svm by baldigroup on 2008-01-15 17:54:51 as along with 14 people and 1 group barmak7282 thefillm kira awg2 moonykily fiacobelli sohanz srp33 grzegorz chad_davis zoop xiaoyan2006 iggykay schulz VT_DLRL
	Graph kernels for chemical informatics [My Copy] Neural Networks, Vol. 18, No. 8. (October 2005), pp. 1093-1110. by L. Ralaivola, S. Swamidass, H. Saigo, P. Baldi posted to baldi chemoinformatics classification fingerprint kernels svm by baldigroup on 2008-01-15 17:48:32 as along with 2 people badi kuhn
	Support vector machines for large-scale regression problems [My Copy] (2000) by R. Collobert, S. Bengio posted to machinelearning prediction svm by baldigroup on 2008-01-15 17:45:59 as
	Evaluating Virtual Screening Methods: Good and Bad Metrics for the “Early Recognition” Problem [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 2. (1 March 2007), pp. 488-508. by Jean-Francois Truchon, Christopher I. Bayly posted to auac auc bedroc evaluation metrics roc virtualscreening by baldigroup on 2007-11-28 19:13:10 as along with 3 people BragilMassoud kmdaily sithmein
	Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005), pp. i359-368. by S. Joshua Swamidass, Jonathan Chen, Jocelyne Bruand, Peter Phung, Liva Ralaivola, Pierre Baldi posted to baldi cancer cheminformatics chemistry chemoinformatics classification fingerprint kernels molecules prediction search toxicity by baldigroup on 2007-11-28 19:00:45 as along with 1 person pablocarb
	Lossless Compression of Chemical Fingerprints Using Integer Entropy Codes Improves Storage and Retrieval [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 6. (1 November 2007), pp. 2098-2109. by Pierre Baldi, Ryan W. Benz, Daniel S. Hirschberg, S. Joshua Swamidass posted to baldi cheminformatics chemoinformatics compression eliasgamma fingerprint golomb lossless molecules search tanimoto by baldigroup on 2007-11-28 18:58:25 as along with 3 people pablocarb chemhack daevans
	Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints in Linear and Sublinear Time [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 2. (1 March 2007), pp. 302-317. by S. Joshua Swamidass, Pierre Baldi posted to baldi chemdb cheminformatics chemistry chemoinformatics fastsearch fingerprint search tanimoto tversky by baldigroup on 2007-11-28 18:54:55 as along with 2 people mijam christoph_steinbeck
	Mathematical Correction for Fingerprint Similarity Measures to Improve Chemical Retrieval. [My Copy] J Chem Inf Model (20 April 2007) by S J. Swamidass, Pierre Baldi posted to baldi chemdb cheminformatics chemistry chemoinformatics correction database fingerprint molecules search tanimoto by baldigroup on 2007-11-28 18:54:11 as along with 3 people pablocarb kuhn dullhunk
	ChemDB: a public database of small molecules and related chemoinformatics resources [My Copy] Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4133-4139. by Jonathan Chen, Joshua S. Swamidass, Jocelyne Bruand, Pierre Baldi posted to baldi chemdb cheminformatics chemistry chemoinformatics database molecules search by baldigroup on 2007-11-28 18:52:04 as
	One- to Four-Dimensional Kernels for Virtual Screening and the Prediction of Physical, Chemical, and Biological Properties [My Copy] Journal of Chemical Information Modelling, Vol. 47, No. 3. (2007), pp. 965-974. by Chloé-Agathe Azencott, Alexandre Ksikes, Joshua S. Swamidass, Jonathan H. Chen, Liva Ralaivola, Pierre Baldi posted to baldi chemdb cheminformatics chemistry chemoinformatics kernels prediction search virtualscreening by baldigroup on 2007-11-28 18:51:25 as
	ChemDB update full-text search and virtual chemical space [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2348-2351. by Jonathan H. Chen, Erik Linstead, S. Joshua Swamidass, Dennis Wang, Pierre Baldi posted to baldi chemdb cheminformatics chemistry chemoinformatics search by baldigroup on 2007-11-28 18:46:04 as along with 3 people guhjy kuhn massivemayhem

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baldigroup's library 38 articles Export

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