balicea's genome-interactome [39 articles] Export

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	Comprehensive mapping of long-range interactions reveals folding principles of the human genome [My Copy] Science, Vol. 326 (2009), 289. by E. Lieberman-Aiden posted to whole-genomic systems-biology genome-structure genome-interactome comp-topology by balicea on 2009-10-09 04:08:54 as
	Protein–protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach [My Copy] Physical Biology, Vol. 2, No. 2. (June 2005), S24. by Ozlem Keskin, Buyong Ma, Kristina Rogale, K. Gunasekaran, Ruth Nussinov posted to genome-interactome reviews systems-biology by balicea on 2009-05-01 15:42:07 as along with 2 people laurabailey henschel
	Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases [My Copy] BMC Bioinformatics, Vol. 8 (04 October 2007), 372. by Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan posted to evolutionary-proteomics functional-genome gene-gene genome-interactome informatics networks systems-biology by balicea on 2008-12-30 21:39:37 as along with 6 people and 1 group turnersd fhalbrit daforerog guhjy jfr shikin GeneGo
	A Bioinformatician's Guide to Metagenomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to ecophysiology genome-association genome-interactome genome-meta reviews by balicea on 2008-12-28 00:37:31 as along with 40 people and 8 groups ajsferreira CorinYeats sconlan jasontsai halinat hwright michaelbarton taylor73 esyoun bluto idoerg hpaces skembel inquil EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku Orengo Group Journal Picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	Chromosomal mapping and genomic organization of an evolutionarily conserved zinc finger gene ZNF277. [My Copy] Genomics, Vol. 66, No. 2. (1 June 2000), pp. 226-228. by H. Liang, W. Guo, L. Nagarajan posted to gene-zinc-finger genome-interactome genome-structure genome-transcriptome genome-variation genotype-to-phenotype molecular-signaling by balicea on 2008-12-25 21:21:29 as along with 1 person weiguo1111
	Genome-wide analyses of alternative splicing in plants: Opportunities and challenges [My Copy] Genome Research, Vol. 18 (2008), pp. 1381-1392. by W. B. Barbazuk, Y. Fu, K. M. Mcginnis posted to evolutionary-genomics genome-interactome genome-splicings genome-transcriptome reviews systems-biology whole-genomic by balicea on 2008-12-18 16:52:16 as
	Silenced RNA on the move. [My Copy] Nature, Vol. 438 (2005), pp. 433-435. by Dahm, Kiebler posted to bio-tech functional-genome genome-interactome genome-transcriptome reviews rna by balicea on 2008-12-17 20:30:39 as
	Regulatory activity revealed by dynamic correlations in gene expression noise [My Copy] Nature Genetics, Vol. 40, No. 12. (23 November 2008), pp. 1493-1498. by Mary J. Dunlop, Robert S. Cox, Joseph H. Levine, Richard M. Murray, Michael B. Elowitz posted to gene-expression genome-interactome genome-transcriptome regulatory-cascades stochastic by balicea on 2008-12-17 20:13:30 as along with 5 people ellarond jbhiatt erel10 balabu jjray
	An epigenetic role for maternally inherited piRNAs in transposon silencing. [My Copy] Science, Vol. 322, No. 5906. (2008), pp. 1387-1392. by J. Brennecke, C. D. Malone, A. A. Aravin, R. Sachidanandam, A. Stark, G. J. Hannon posted to animal-model bio-tech epigenetics evo-tech evolutionary-genomics functional-genome genome-interactome genome-transposon rna systems-biology by balicea on 2008-12-17 20:01:14 as
	Innovation and robustness in complex regulatory gene networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 34. (21 August 2007), pp. 13591-13596. by S. Ciliberti, O. C. Martin, A. Wagner posted to complexity evolutionary-genomics genome-association genome-interactome genome-prediction networks by balicea on 2008-12-15 20:42:51 as along with 12 people and 3 groups abhishek_tiwari mjoach ocs benjaminsb dakelley cmzmasek dlobo jmenche dpollard sebastien_vigneau zwang cisevol GEB EisenLab cis-regulatory-evolution
	Genes, Genetics, and Epigenetics: A Correspondence [My Copy] Science, Vol. 293, No. 5532. (10 August 2001), pp. 1103-1105. by Wu, J. R. Morris posted to epigenetics evolutionary-genomics functional-genome gene-expression genome-interactome genotype-to-phenotype reviews by balicea on 2008-12-09 18:38:04 as along with 1 person haroldp625
	Annotation of Mammalian Primary microRNAs [My Copy] BMC Genomics, Vol. 9 (27 November 2008), 564. by Harpreet, Sam Griffiths-Jones posted to genome-interactome genome-structure genome-variation informatics rna by balicea on 2008-11-28 05:49:26 as along with 8 people and 1 group jsatkosk jfr heliopais daforerog druvus pengchy ealloza sjung microRNA
	A domain interaction map based on phylogenetic profiling. [My Copy] Journal of molecular biology, Vol. 344, No. 5. (10 December 2004), pp. 1331-1346. by P. Pagel, P. Wong, D. Frishman posted to evolutionary-genomics genome-interactome phylogenetics systems-biology by balicea on 2008-11-27 06:47:59 as along with 1 person saket
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted to evolutionary-genomics evolutionary-proteomics functional-genome genome-interactome genome-structure genome-transcriptome systems-biology by balicea on 2008-11-27 06:46:32 as along with 6 people and 3 groups kgutwin grahamc markchen zwang cabbagesofdoom barry structural_bioinformatics McCammon Bioinformatics
	Modelling and analysis of gene regulatory networks [My Copy] Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780. by Guy Karlebach, Ron Shamir posted to gene-expression general-physiology genome-interactome genome-transcriptome networks reviews by balicea on 2008-09-30 21:36:42 as along with 14 people antonkratz agonzale cannin tklee aviad_work kaarsinogen thomaskelder fgibson druvus brianb nedwards dakelley guhjy tmmurali
	Discerning static and causal interactions in genome-wide reverse engineering problems. [My Copy] Bioinformatics (Oxford, England) (8 May 2008) by M Zampieri, N Soranzo, C Altafini posted to applied-math bio-stat evolutionary-genomics genome-interactome genotype-to-phenotype modeling-and-simulation phenotype-to-genotype by balicea on 2008-08-04 22:23:43 as along with 6 people dolchan rdiaz roys guhjy tmmurali verdicchio
	Cell and environment interactions in tumor microregions: the multicell spheroid model. [My Copy] Science (New York, N.Y.), Vol. 240, No. 4849. (8 April 1988), pp. 177-184. by R. M. Sutherland posted to cell-models ecophysiology gene-gene genome-interactome genotype-to-phenotype systems-biology by balicea on 2008-07-28 01:31:07 as along with 1 person bakakaj
	Gene by environment interactions. [My Copy] Genetic epidemiology, Vol. 31 Suppl 1 (2007) by R. C. Culverhouse, B. K. Suarez, L. Beckmann, et al.P. Chen, Y. S. Chen, Y. F. Chiu, J. Chang-Claude, A. Dempfle, R. Hein, R. Kazma, J. J. Lebrec, S. Lee, S. Lim, B. S. Maher, T. Park, H. Perdry, K. S. Wang, P. P. Wolkow, W. Xu posted to bio-stat cross-talk ecophysiology epigenetics evolutionary-genomics gene-gene genome-interactome genotype-to-phenotype reviews by balicea on 2008-07-22 04:04:38 as along with 1 person guhjy
	The use of logic relationships to model colon cancer gene expression networks with mRNA microarray data. [My Copy] Journal of biomedical informatics, Vol. 41, No. 4. (August 2008), pp. 530-543. by X. Ruan, J. Wang, H. Li, R. E. Perozzi, E. F. Perozzi posted to biological-inspired-modeling cell-models diseaseomics gene-expression gene-gene genome-interactome modeling-and-simulation networks rna by balicea on 2008-07-17 15:12:17 as along with 1 person jfr
	Conserved and Differential Effects of Dietary Energy Intake on the Hippocampal Transcriptomes of Females and Males [My Copy] PLoS ONE, Vol. 3, No. 6. (11 June 2008), e2398. by Bronwen Martin, Michele Pearson, Randall Brenneman, et al.Erin Golden, Alex Keselman, Titilola Iyun, Olga D. Carlson, Josephine M. Egan, Kevin G. Becker, William Wood, Vinayakumar Prabhu, Rafael de Cabo, Stuart Maudsley, Mark P. Mattson posted to adaptive-systems brain-anatomy cell-models genome-interactome genome-transcriptome molecular-general neuro-chem sex-differentiation by balicea on 2008-07-01 04:02:39 as along with 1 group Fasting, food and evolution
	A matter of timing: microRNA-controlled temporal identities in worms and flies [My Copy] Genes Dev., Vol. 22, No. 12. (15 June 2008), pp. 1572-1576. by Manfred Frasch posted to animal-model cell-models development genome-interactome genome-transcriptome rna time-course time-dynamics by balicea on 2008-06-29 21:28:56 as along with 4 people and 1 group thegoose2 valeriehilgers tharris emptyhb C. elegans / WormBase
	An in Vivo Map of the Yeast Protein Interactome [My Copy] Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470. by Kirill Tarassov, Vincent Messier, Christian R. Landry, et al.Stevo Radinovic, Mercedes M. Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W. Michnick posted to animal-model evolutionary-proteomics genome-interactome informatics systems-biology by balicea on 2008-06-27 05:09:07 as along with 8 people semin roys ocs carlk thomaskelder Petersarkies renatomilani zwang
	Predicting disease genes using protein-protein interactions. [My Copy] Journal of medical genetics, Vol. 43, No. 8. (August 2006), pp. 691-698. by M. Oti, B. Snel, M. A. Huynen, H. G. Brunner posted to diseaseomics evolutionary-proteomics gene-gene genome-interactome genome-prediction informatics by balicea on 2008-06-26 05:05:20 as along with 8 people daforerog saket diamantis winterschlaefer bicko jiny svdate xingxu
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted to diseaseomics evolutionary-proteomics genome-interactome genome-transcriptome immunity informatics networks by balicea on 2008-06-19 16:38:28 as along with 27 people shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	Genes and causation [My Copy] Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3001-3015. by Denis Noble posted to evolutionary-genomics functional-genome gene-expression gene-gene genome-association genome-interactome genome-structure methods modeling-and-simulation by balicea on 2008-06-19 16:34:05 as along with 6 people abhishek_tiwari brocktice adriandefroment stringertheory pylikosk guhjy
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods (2008) posted to evolutionary-genomics evolutionary-proteomics genome-interactome genome-sequencing genome-structure methods microarray reviews by balicea on 2008-06-16 04:54:48 as along with 1 person guhjy
	The coming of age for Piwi proteins. [My Copy] Molecular cell, Vol. 26, No. 5. (8 June 2007), pp. 603-609. by Anita G. Seto, Robert E. Kingston, Nelson C. Lau posted to evolutionary-proteomics functional-genome genome-interactome molecular-general molecular-signaling regulatory-cascades reviews rna by balicea on 2008-06-16 03:58:45 as along with 2 people guhjy zhanghuiqiong
	A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. [My Copy] Dev Cell, Vol. 10, No. 6. (June 2006), pp. 797-807. by T. Sandmann, L. J. Jensen, J. S. Jakobsen, et al.M. M. Karzynski, M. P. Eichenlaub, P. Bork, E. E. Furlong posted to evo-devo evolutionary-genomics evolutionary-proteomics genome-interactome genome-transcriptome molecular-signaling musculoskeletal_systems regulatory-cascades by balicea on 2008-06-16 03:55:19 as along with 4 people and 1 group lp2 daveGerrard larsjuhljensen roys BergmanLab
	piRNAs--the ancient hunters of genome invaders. [My Copy] Genes Dev, Vol. 21, No. 14. (15 July 2007), pp. 1707-1713. by J. V. Hartig, Y. Tomari, K. Förstemann posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics functional-genome genome-interactome molecular-general molecular-signaling reviews rna by balicea on 2008-06-16 03:52:18 as along with 5 people and 1 group sebastien_vigneau N0131826 cabbagezs dpollard zhanghuiqiong RockmanLab
	A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae [My Copy] Mol Syst Biol, Vol. 3 (31 July 2007) by Chris Grilly, Jesse Stricker, Wyming L. Pang, Matthew R. Bennett, Jeff Hasty posted to functional-genome gene-expression genome-interactome networks by balicea on 2008-06-12 05:03:53 as along with 5 people MarcJungbluth mjsousa zwang kfm9876 austin
	Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W341-346. by Fatima Al-Shahrour, Jose Carbonell, Pablo Minguez, et al.Stefan Goetz, Ana Conesa, Joaquin Tarraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquin Dopazo posted to bio-stat evolutionary-genomics evolutionary-proteomics functional-genome genome-interactome genome-transcriptome informatics by balicea on 2008-06-01 07:06:40 as along with 3 people sgoetz bertelsen neils
	Estimating the size of the human interactome [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6959-6964. by Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, et al.Ronald Stewart, Hyeong J. An, Michael Lappe, Carsten Wiuf posted to applied-math bio-stat gene-gene genome-interactome informatics systems-biology by balicea on 2008-06-01 06:55:29 as along with 23 people and 1 group aelef thegoose2 bicko tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom marck friendpine brianb roys Evangelia dragonrez bpcusack C. elegans / WormBase
	Mutation of miRNA target sequences during human evolution [My Copy] Trends in Genetics, Vol. 24, No. 6. (8 June 2008), pp. 262-265. by P. Gardner, J. Vinther posted to evolutionary-genomics genome-interactome genome-structure by balicea on 2008-05-28 19:02:02 as along with 4 people and 1 group ppgardne valeriehilgers heliopais ealloza microRNA
	'Deep phenotyping': characterizing populations in the era of genomics and systems biology. [My Copy] Current opinion in lipidology, Vol. 19, No. 2. (April 2008), pp. 151-157. by R. P. Tracy posted to genome-interactome genome-variation genotype-to-phenotype reviews systems-biology by balicea on 2008-05-06 16:58:39 as along with 1 person guhjy
	Everything you wanted to know about small RNA but were afraid to ask [My Copy] Laboratory Investigation, Vol. doi: 10.1038/labinvest.2008.32 (2008) by S. D. Boyd posted to evo-tech gene-gene genome-interactome genome-structure genome-variation genotype-to-phenotype methods neuro-tech rna by balicea on 2008-05-01 21:10:06 as
	Multiplex amplification of large sets of human exons. [My Copy] Nature methods, Vol. 4, No. 11. (14 November 2007), pp. 931-936. by Gregory J. Porreca, Kun Zhang, Jin Billy B. Li, et al.Bin Xie, Derek Austin, Sara L. Vassallo, Emily M. LeProust, Bill J. Peck, Christopher J. Emig, Fredrik Dahl, Yuan Gao, George M. Church, Jay Shendure posted to evolutionary-genomics evolutionary-proteomics genome-interactome genome-splicings genome-variation by balicea on 2008-02-02 22:28:13 as along with 4 people jbhiatt slevy03 guhjy caseybrown
	Psoriasis is associated with increased -defensin genomic copy number. [My Copy] Nature, Vol. 40, No. 1. (2008), pp. 23-25. posted to copy-number diseaseomics evolutionary-genomics evolutionary-proteomics genome-interactome genome-variation genotype-to-phenotype rna by balicea on 2008-01-25 19:36:31 as
	The Human Connectome: A Structural Description of the Human Brain [My Copy] PLoS Comput Biol, Vol. 1, No. 4. (30 September 2005), e42. by Olaf Sporns, Giulio Tononi, Rolf Kötter posted to brain-anatomy general-physiology genome-interactome informatics neuro-connectivity neuro-tech systems-biology by balicea on 2008-01-25 05:43:26 as along with 15 people and 2 groups knuu jclau adrianna Bolozna flieder yonghe librain dpf carlk pbellec dolhuis josepe suizan bandrewfox jotwin Complex_Brain_Networks SNE
	High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 934-939. by David Juan, Florencio Pazos, Alfonso Valencia posted to coevolution evolutionary-genomics genome-interactome informatics networks systems-biology whole-genomic by balicea on 2008-01-22 19:41:32 as along with 18 people and 1 group dfdong ptrobajo biomcgary qluo winterschlaefer marti tmmurali brant sebastien_vigneau bluto cjeans aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen

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brain-anatomy	470
evolution	447
cog-neuro	430
movement-science	419
operational-neuro	384
modeling-and-simulation	326
animal-model	313
neuro-connectivity	301
gene-expression	291
control-theory	266
neuro-coding	256
adaptive-systems	254
perception	242
complexity	234
learning-and-memory	234
evolutionary-genomics	229
brain-machine-interface	227
behavior	226
neuroplasticity	224
applied-math	214
sensory-systems	213
informatics	204
networks	200
biological-inspired-modeling	187
development	180
ecophysiology	172
molecular-signaling	170
molecular-general	163
reviews	158
musculoskeletal_systems	157
genome-variation	143
systems-biology	138
spatial-cognition	133
morphogenesis	129
robotics	128
multisensory-integration	123
genotype-to-phenotype	120
neuro-tech	120
neuroethology	111
general-physiology	106
eeg-components	104
neuro-chem	100
general-interfaces	99
neuro-timing	98
evolvability	97
genome-structure	96
regulatory-cascades	91
neuro-sync	90
regeneration	78
neuro-computation	77
whole-genomic	76
evolutionary-proteomics	74
methods	74
neuro-mechanics	72
sensor-fusion	70
time-oriented-science	64
diseaseomics	59
time-dynamics	57
virtual-environment	56
sensor-tech	55
bistability	53
growth-regulation	52
alife	51
cell-models	49
evolution-of-intelligence	47
synaptic-complexity	47
evo-devo	46
functional-genome	46
genome-association	46
microarray	45
phylogeny	45
neuro-disorders	44
physiological-remodeling	41
gene-gene	39
genome-interactome	39
cultural-evolution	38
ergonomics	38
bio-stat	36
heredity	36
time-course	34
comparative-neuro	33
performance-augmentation	33
nat-selection-tests	32
evo-computation	30
genome-sequencing	30
genome-transcriptome	30
neuro-evolution	30
biological-mechanics	29
bme	28
multimodal-integration	27
rna	27
wavelets	27
evo-tech	26
neuro-spike	25
robustness	24
stem-cells	24
pop-gen	23
attention	22
information-theory	21
biological-rhythms	20
genome-prediction	20
epigenetics	19
graph-theory	19
bio-tech	18
copy-number	18
game-theory	18
machine-learning	18
combinatorics	17
homeotic-theory	16
neuro-genetics	16
coevolution	14
neuro-morphic	14
phenotype-to-genotype	14
genome-splicings	13
neuro-rehabilitation	13
neuro-hormonal	12
tissue-mechanics	12
genome-transposon	11
cross-talk	10
event-detection	10
in-vitro	10
real-time-monitoring	10
immunity	9
transgene-models	9
anthropometry	8
artificial-gravity	8
mems	8
neuro-consciousness	8
switching-examples	8
aging	7
enviro-switching	7
metabolomics	7
speciation	7
transmission-dynamics	7
bio-astro	6
evo-domestication	6
exercise	6
sleep	6
teaching	6
cell-reprogramming	5
earth-science	5
information-fusion	5
nano-general	5
phylogenetics	5
workspaces	5
planet-model	4
reproduction	4
sex-differentiation	4
stochastic	4
allometric-scaling	3
bio-bone	3
bio-cancer	3
comp-ontology	3
neuro-peptidomics	3
orthologs-paralogs	3
archaea	2
cell-automata	2
comp-databases	2
dynamic-walking	2
evo-capacitance	2
excitable-media	2
hpc	2
physics-general	2
size-shape	2
soft-active-materials	2
symbiosis	2
apoptosis	1
cell-model	1
comp-topology	1
constructal-theory	1
gene-duplication	1
gene-zinc-finger	1
genome-meta	1
genome-senescence	1
genome-snp	1
interferon	1
kinetics	1
micro-mechanics	1
myelin	1
neutral-spaces	1
pluripotency	1

balicea's genome-interactome [39 articles] Export

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