balicea's genome-sequencing [30 articles] Export

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	Integrative annotation of 21,037 human genes validated by full-length cDNA clones. [My Copy] PLoS Biol, Vol. 2, No. 6. (June 2004) by T. Imanishi, T. Itoh, Y. Suzuki, et al.C. O'Donovan, S. Fukuchi, K. O. Koyanagi, R. A. Barrero, T. Tamura, Y. Yamaguchi-Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, K. Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, J. Thierry-Mieg, D. Thierry-Mieg, J. Ashurst, L. Jia, M. Nakao, M. A. Thomas, N. Mulder, Y. Karavidopoulou, L. Jin, S. Kim, T. Yasuda, B. Lenhard, E. Eveno, Y. Suzuki, C. Yamasaki, J. Takeda, C. Gough, P. Hilton, Y. Fujii, H. Sakai, S. Tanaka, C. Amid, M. Bellgard, M. d. e. . F. Bonaldo, H. Bono, S. K. Bromberg, A. J. Brookes, E. Bruford, P. Carninci, C. Chelala, C. Couillault, S. J. de Souza, M. A. Debily, M. D. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, K. Fukami-Kobayashi, G. R. Gopinath, E. Graudens, Y. Hahn, M. Han, Z. G. Han, K. Hanada, H. Hanaoka, E. Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, A. Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, K. Kimura, B. Korn, V. Kuryshev, I. Makalowska, T. Makino, S. Mano, R. Mariage-Samson, J. Mashima, H. Matsuda, H. W. Mewes, S. Minoshima, K. Nagai, H. Nagasaki, N. Nagata, R. Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, T. Otsuki, D. Piatier-Tonneau, A. Poustka, S. X. Ren, N. Saitou, K. Sakai, S. Sakamoto, R. Sakate, I. Schupp, F. Servant, S. Sherry, R. Shiba, N. Shimizu, M. Shimoyama, A. J. Simpson, B. Soares, C. Steward, M. Suwa, M. Suzuki, A. Takahashi, G. Tamiya, H. Tanaka, T. Taylor, J. D. Terwilliger, P. Unneberg, V. Veeramachaneni, S. Watanabe, L. Wilming, N. Yasuda, H. S. Yoo, M. Stodolsky, W. Makalowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, J. Quackenbush, Y. Okazaki, Y. Hayashizaki, W. Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Z. Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. L. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano posted to genome-prediction genome-sequencing methods systems-biology whole-genomic by balicea on 2008-12-28 07:19:37 as along with 3 people and 1 group Cortel kaspermunch raylim Bioinformatics
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted to functional-genome genome-prediction genome-sequencing genome-structure genome-transcriptome informatics rna by balicea on 2008-12-25 21:27:31 as along with 20 people and 1 group hzoltan cthachuk GustavoLacerda jamselem n00c jonilaserson ghattem nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy fhalbrit GeeSharpMinor natstreet druvus neils SIMR bioinformatics
	A genome-wide screen for noncoding elements important in primate evolution [My Copy] BMC Evolutionary Biology, Vol. 8 (23 January 2008), 17. by Eliot C. Bush, Bruce T. Lahn posted to animal-model evolutionary-genomics genome-sequencing genome-structure by balicea on 2008-12-18 16:31:14 as along with 2 people and 1 group provero cisevol cis-regulatory-evolution
	Tissue-driven hypothesis of genomic evolution and sequence-expression correlations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 February 2007), pp. 2779-2784. by Xun Gu, Zhixi Su posted to cell-models evolutionary-genomics functional-genome gene-expression genome-association genome-sequencing systems-biology by balicea on 2008-07-29 05:04:46 as along with 7 people aktas jeremymiller xwbcn gpalidwor shigepong cjeans ghattem
	Pyrosequencing sheds light on DNA sequencing. [My Copy] Genome research, Vol. 11, No. 1. (1 January 2001), pp. 3-11. by M. Ronaghi posted to evo-tech genome-sequencing methods by balicea on 2008-07-21 19:55:29 as along with 7 people and 1 group seb1 dzunkova tpreeprem mariakmejia kieran101 darioacha bozdagd gatech-compgenomics
	PALEONTOLOGY: New Tricks with Old Bones [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 211-212. by Rachel Mackelprang, Edward M. Rubin posted to bio-bone general-physiology genome-sequencing methods by balicea on 2008-07-17 15:08:49 as along with 1 person jmeppley
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to gene-expression genome-sequencing genome-splicings genome-transcriptome genome-variation systems-biology by balicea on 2008-07-12 05:49:09 as along with 28 people and 2 groups hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor djkt ArtemPankin zwang BenosLab Khavkin's lab
	The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases [My Copy] Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1011-1019. by Karen Usdin posted to functional-genome gene-expression genome-sequencing genome-structure by balicea on 2008-07-01 20:19:03 as along with 6 people robfsouza YukaH coela druvus Neeperando dchughes
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to genome-prediction genome-sequencing informatics reviews whole-genomic by balicea on 2008-07-01 20:14:39 as along with 18 people and 1 group n00c mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali stajich reyez lp2 GustavoLacerda tharris caseybrown dchughes hpaces serdarbozdag jfr Mycology
	Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals [My Copy] Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029. by Ines Hellmann, Yuan Mang, Zhiping Gu, et al.Peter Li, de La, Andrew G. Clark, Rasmus Nielsen posted to evolutionary-genomics genome-sequencing genome-variation pop-gen whole-genomic by balicea on 2008-07-01 20:03:46 as along with 5 people jasontsai djkt APRegier Neeperando serdarbozdag
	Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109. by Ke Hao, Eric E. Schadt, John D. Storey posted to genome-association genome-prediction genome-sequencing microarray molecular-general whole-genomic by balicea on 2008-06-30 01:54:51 as along with 6 people noushin jfr brianb Stew caseybrown guhjy
	Genetics. A ruff theory of evolution: gene stutters drive dog shape. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5705. (24 December 2004) by E. Pennisi posted to animal-model evo-domestication evolution evolutionary-genomics evolvability functional-genome genome-sequencing genome-structure genome-variation reviews by balicea on 2008-06-22 05:50:10 as along with 1 person jphekman
	EagleView: A genome assembly viewer for next-generation sequencing technologies [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1538-1543. by Weichun Huang, Gabor Marth posted to evo-tech functional-genome genome-sequencing informatics systems-biology by balicea on 2008-06-19 17:00:25 as along with 15 people Thaverkamp imaginatio hpaces darian n00c xingxu natstreet abizar druvus bcondon fpattyn APRegier Neeperando GustavoLacerda guhjy
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods (2008) posted to evolutionary-genomics evolutionary-proteomics genome-interactome genome-sequencing genome-structure methods microarray reviews by balicea on 2008-06-16 04:54:48 as along with 1 person guhjy
	Predicting failure rate of PCR in large genomes [My Copy] Nucl. Acids Res. (20 May 2008), gkn290. by Reidar Andreson, Tonu Mols, Maido Remm posted to functional-genome genome-prediction genome-sequencing informatics methods systems-biology by balicea on 2008-06-15 04:36:47 as along with 6 people daforerog maximilianh druvus wisdom_love niallhaslam guhjy
	Getting Up Close and Personal with Your Genome [My Copy] Cell, Vol. 133, No. 5. (30 May 2008), pp. 753-756. by Laura Bonetta posted to genome-prediction genome-sequencing reviews by balicea on 2008-06-03 03:10:02 as along with 2 people misonneh neils
	Methylation analysis of a marsupial X-linked CpG island by bisulfite genomic sequencing [My Copy] Genome Res., Vol. 6, No. 2. (1 February 1996), pp. 114-123. by Daf Loebel, Pg Johnston posted to epigenetics genome-sequencing sex-differentiation by balicea on 2008-06-01 07:09:50 as along with 2 people and 2 groups joepickrell sebastien_vigneau Imprinting X-chromosome inactivation
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to evo-tech genome-sequencing genome-variation informatics neuro-tech by balicea on 2008-05-01 21:08:23 as along with 15 people and 4 groups n00c GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to general-physiology genome-sequencing genome-structure genome-variation whole-genomic by balicea on 2008-05-01 19:08:11 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Molecular evolutionary clock and the neutral theory [My Copy] Journal of Molecular Evolution, Vol. 26, No. 1. (1 November 1987), pp. 24-33. by Motoo Kimura posted to evo-computation evolution evolutionary-genomics genome-sequencing genome-structure genome-variation by balicea on 2008-02-15 02:38:19 as along with 2 people ankur_iitg chrys
	Primate molecular divergence dates [My Copy] Molecular Phylogenetics and Evolution, Vol. 41, No. 2. (November 2006), pp. 384-394. by Michael E. Steiper, Nathan M. Young posted to evolution evolutionary-genomics genome-sequencing genome-structure genome-variation molecular-general by balicea on 2008-02-15 02:37:18 as along with 3 people and 3 groups aprasad dchughes nickluscombe G4ID EBI-regulation Genetics-of-Gambling
	Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution. [My Copy] Nature, Vol. 39, No. 11. (2007), pp. 1361-1368. posted to copy-number evolution evolutionary-genomics genome-sequencing genome-structure genome-variation by balicea on 2008-01-25 19:38:11 as
	Recent segmental duplications in the human genome. [My Copy] Science, Vol. 297, No. 5583. (9 August 2002), pp. 1003-1007. by J. A. Bailey, Z. Gu, R. A. Clark, et al.K. Reinert, R. V. Samonte, S. Schwartz, M. D. Adams, E. W. Myers, P. W. Li, E. E. Eichler posted to evolution evolutionary-genomics genome-sequencing genome-structure genome-variation by balicea on 2008-01-25 19:34:39 as along with 5 people dakelley APRegier daed pcahan1 bioguru2000
	Essential genes of a minimal bacterium [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 425-430. by John I. Glass, Nacyra Assad-Garcia, Nina Alperovich, et al.Shibu Yooseph, Matthew R. Lewis, Mahir Maruf, Clyde A. Hutchison, Hamilton O. Smith, Craig J. Venter posted to alife animal-model archaea genome-sequencing genome-structure genome-variation methods by balicea on 2008-01-25 19:21:38 as along with 11 people and 2 groups Scis0000002 azazello jwm JKelly555 hillevi famoreira nurban westoll kevinchannon stringertheory mcox Radiation_Damage Stressosome
	Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons [My Copy] Human Mutation, Vol. 28, No. 2. (2007), pp. 99-130. by Hildegard Kehrer-Sawatzki, David N. Cooper posted to animal-model comparative-neuro evolution evolutionary-genomics genome-sequencing genome-structure by balicea on 2008-01-25 05:45:29 as along with 6 people and 2 groups bpb dchughes sebastien_vigneau jpdemuth pradiptaray hpaces G4ID Genetics-of-Gambling
	Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 21. (15 October 2002), pp. 13636-13641. by C. Dasilva, H. Hadji, C. Ozouf-Costaz, et al.S. Nicaud, O. Jaillon, J. Weissenbach, H. Roest Crollius posted to animal-model genome-sequencing genome-structure genome-transposon genome-variation whole-genomic by balicea on 2008-01-22 17:04:39 as along with 1 person timflutre
	Extensive low-affinity transcriptional interactions in the yeast genome. [My Copy] Genome Res (29 June 2006) by Amos Tanay posted to animal-model evo-computation evolutionary-proteomics gene-expression gene-gene genome-association genome-sequencing genome-structure genome-variation genotype-to-phenotype informatics systems-biology by balicea on 2008-01-22 00:21:45 as along with 6 people and 2 groups devin indigoviolet dpollard koller lusk emptyhb TranscriptionalRegulationWithThermodynamicModels EisenLab
	Practical Strategies for Discovering Regulatory DNA Sequence Motifs [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (28 April 2006), e36. by Kenzie D. MacIsaac, Ernest Fraenkel posted to evolutionary-genomics genome-sequencing genome-structure genome-variation genotype-to-phenotype growth-regulation homeotic-theory informatics systems-biology by balicea on 2008-01-21 19:51:16 as along with 17 people and 2 groups Jporci leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin bryankr ana chad_davis hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
	ARACHNE: A Whole-Genome Shotgun Assembler [My Copy] Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189. by Serafim Batzoglou, David B. Jaffe, Ken Stanley, et al.Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P. Mesirov, Eric S. Lander posted to genome-sequencing informatics whole-genomic by balicea on 2008-01-16 03:21:54 as along with 11 people and 3 groups natstreet dakelley bpb dayjm balajis indigoviolet ccr azazello wenhan tpreeprem Neeperando EisenLab MBLAB gatech-compgenomics
	454 sequencing put to the test using the complex genome of barley [My Copy] BMC Genomics, Vol. 7, No. 1. (26 October 2006), 275. by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy Close, Beat Keller, Nils Stein posted to evo-tech genome-sequencing genome-structure genome-variation methods reviews whole-genomic by balicea on 2008-01-16 03:14:38 as along with 8 people and 3 groups n00c orzenil GustavoLacerda jmeppley ghattem azazello cisevol tpreeprem MBLAB BergmanLab gatech-compgenomics

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brain-anatomy	470
evolution	447
cog-neuro	430
movement-science	419
operational-neuro	384
modeling-and-simulation	326
animal-model	313
neuro-connectivity	301
gene-expression	291
control-theory	266
neuro-coding	256
adaptive-systems	254
perception	242
complexity	234
learning-and-memory	234
evolutionary-genomics	229
brain-machine-interface	227
behavior	226
neuroplasticity	224
applied-math	214
sensory-systems	213
informatics	204
networks	200
biological-inspired-modeling	187
development	180
ecophysiology	172
molecular-signaling	170
molecular-general	163
reviews	158
musculoskeletal_systems	157
genome-variation	143
systems-biology	138
spatial-cognition	133
morphogenesis	129
robotics	128
multisensory-integration	123
neuro-tech	120
genotype-to-phenotype	120
neuroethology	111
general-physiology	106
eeg-components	104
neuro-chem	100
general-interfaces	99
neuro-timing	98
evolvability	97
genome-structure	96
regulatory-cascades	91
neuro-sync	90
regeneration	78
neuro-computation	77
whole-genomic	76
methods	74
evolutionary-proteomics	74
neuro-mechanics	72
sensor-fusion	70
time-oriented-science	64
diseaseomics	59
time-dynamics	57
virtual-environment	56
sensor-tech	55
bistability	53
growth-regulation	52
alife	51
cell-models	49
synaptic-complexity	47
evolution-of-intelligence	47
functional-genome	46
evo-devo	46
genome-association	46
microarray	45
phylogeny	45
neuro-disorders	44
physiological-remodeling	41
gene-gene	39
genome-interactome	39
ergonomics	38
cultural-evolution	38
bio-stat	36
heredity	36
time-course	34
comparative-neuro	33
performance-augmentation	33
nat-selection-tests	32
genome-sequencing	30
genome-transcriptome	30
neuro-evolution	30
evo-computation	30
biological-mechanics	29
bme	28
wavelets	27
multimodal-integration	27
rna	27
evo-tech	26
neuro-spike	25
robustness	24
stem-cells	24
pop-gen	23
attention	22
information-theory	21
biological-rhythms	20
genome-prediction	20
epigenetics	19
graph-theory	19
copy-number	18
bio-tech	18
game-theory	18
machine-learning	18
combinatorics	17
neuro-genetics	16
homeotic-theory	16
neuro-morphic	14
phenotype-to-genotype	14
coevolution	14
genome-splicings	13
neuro-rehabilitation	13
neuro-hormonal	12
tissue-mechanics	12
genome-transposon	11
in-vitro	10
cross-talk	10
event-detection	10
real-time-monitoring	10
immunity	9
transgene-models	9
switching-examples	8
neuro-consciousness	8
artificial-gravity	8
anthropometry	8
mems	8
transmission-dynamics	7
aging	7
metabolomics	7
enviro-switching	7
speciation	7
bio-astro	6
exercise	6
teaching	6
sleep	6
evo-domestication	6
earth-science	5
phylogenetics	5
cell-reprogramming	5
workspaces	5
information-fusion	5
nano-general	5
sex-differentiation	4
planet-model	4
stochastic	4
reproduction	4
bio-cancer	3
orthologs-paralogs	3
bio-bone	3
allometric-scaling	3
comp-ontology	3
neuro-peptidomics	3
comp-databases	2
size-shape	2
soft-active-materials	2
symbiosis	2
archaea	2
evo-capacitance	2
excitable-media	2
hpc	2
cell-automata	2
dynamic-walking	2
physics-general	2
interferon	1
pluripotency	1
gene-zinc-finger	1
cell-model	1
constructal-theory	1
micro-mechanics	1
gene-duplication	1
comp-topology	1
genome-snp	1
genome-senescence	1
kinetics	1
apoptosis	1
myelin	1
genome-meta	1
neutral-spaces	1

balicea's genome-sequencing [30 articles] Export

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