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balicea's phylogeny [43 articles]

Recent papers added to balicea's library classified by the tag phylogeny. You can also see everyone's phylogeny.
  • Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans.
    Genetics, Vol. 167, No. 2. (June 2004), pp. 867-877.
    by MW Hahn, MV Rockman, N Soranzo, DB Goldstein, GA Wray
    posted to regulatory-cascades pop-gen phylogeny phylogenetics nat-selection-tests genotype-to-phenotype genome-variation by balicea on 2008-08-07 16:47:05 as ** along with 2 people and 1 group pradiptaray cisevol cis-regulatory-evolution
  • Do viruses form lineages across different domains of life?
    Research in microbiology, Vol. 154, No. 4. (May 2003), pp. 231-236.
    by DH Bamford
    posted to phylogeny evolution bio-astro by balicea on 2008-07-29 18:07:01 as ** along with 1 person jwm
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to reviews phylogeny phylogenetics genome-structure evolvability evolutionary-genomics animal-model by balicea on 2008-07-29 05:00:44 as ** along with 18 people and 6 groups cisevol isimpson CharlesM PetrovLab operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 hpaces caseybrown emptyhb urgi noor Drosophila-Genetics-Genomics-2008 BergmanLab Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology
  • Compositional constraints and genome evolution.
    Journal of molecular evolution, Vol. 24, No. 1-2. (1986), pp. 1-11.
    by G Bernardi, G Bernardi
    posted to phylogeny genome-variation genome-structure evolvability evolutionary-genomics evolution by balicea on 2008-06-29 21:42:07 as ** along with 1 person karfunkel
  • A new method to estimate relatedness from molecular markers
    Molecular Ecology, Vol. 15, No. 6. (2006), pp. 1657-1667.
    by J Fernandez, MA Toro
    posted to phylogeny methods genome-structure evo-tech evolutionary-genomics evolution by balicea on 2008-06-23 04:02:14 as ** along with 2 people and 1 group sibs cmm FAB-lab
  • The prokaryotic tree of life: past, present...and future?
    Trends in Ecology & Evolution, Vol. 23, No. 5. (May 2008), pp. 276-281.
    by James O Mcinerney, James A Cotton, Davide Pisani
    posted to phylogeny evolvability evolution-of-intelligence evolutionary-proteomics evolutionary-genomics evolution evo-devo evo-computation alife by balicea on 2008-06-16 03:46:08 as ** along with 2 people and 2 groups jlgreen zwang iSEEM Green Lab
  • Evolutionary expansion and anatomical specialization of synapse proteome complexity.
    Nature neuroscience (8 June 2008)
    by Richard D D Emes, Andrew J J Pocklington, Christopher N G N Anderson, Alex Bayes, Mark O O Collins, Catherine A A Vickers, Mike D R D Croning, Bilal R R Malik, Jyoti S S Choudhary, J Douglas D Armstrong, Seth G N G Grant
    posted to synaptic-complexity phylogeny neuro-computation molecular-signaling evolvability evolution-of-intelligence evolutionary-proteomics evolution comparative-neuro brain-anatomy animal-model by balicea on 2008-06-15 04:50:28 as **** along with 2 people and 1 group brian sekulerlab VisionLab
  • Dopamine Innervation in the Thalamus: Monkey versus Rat.
    Cerebral cortex (New York, N.Y. : 1991) (11 June 2008)
    by Miguel Ángel A García-Cabezas, Patricia Martínez-Sánchez, Miguel Ángel A Sánchez-González, Miguel Garzón, Carmen Cavada
    posted to phylogeny neuro-chem comparative-neuro brain-anatomy animal-model by balicea on 2008-06-15 04:47:50 as ** along with 1 person nishiokov
  • Evidence, mechanisms and models for the inheritance of acquired characters
    Journal of Theoretical Biology, Vol. 158, No. 2. (21 September 1992), pp. 245-268.
    by Eva Jablonka, Michael Lachmann, Marion J Lamb
    posted to reviews phylogeny genome-association evolvability evolution-of-intelligence evolutionary-genomics evolution evo-devo cultural-evolution by balicea on 2008-06-15 04:41:23 as ** along with 1 person tomhebbron
  • Large scale genotype-phenotype correlation analysis based on phylogenetic trees.
    Bioinformatics (31 January 2007)
    by Farhat Habib, Andrew D D Johnson, Ralf Bundschuh, Daniel Janies
    posted to phylogeny informatics genotype-to-phenotype bio-stat applied-math by balicea on 2008-06-02 17:43:21 as ** along with 4 people farhat smbe2008 djkt shigepong
  • Loss of LINE-1 Activity in the Megabats
    Genetics, Vol. 178, No. 1. (1 January 2008), pp. 393-404.
    by Michael A Cantrell, Luann Scott, Celeste J Brown, Armando R Martinez, Holly A Wichman
    posted to animal-model evolution evolutionary-genomics gene-expression genome-structure genome-transposon genome-variation phylogeny by balicea on 2008-01-22 19:39:21 as *** along with 1 person aprasad
  • A phylogenetic approach to cultural evolution.
    Trends in Ecology and Evolution, Vol. 20, No. 3. (2005), pp. 116-121.
    by R Mace, CJ Holden
    posted to behavior cultural-evolution phylogeny by balicea on 2008-01-22 19:26:49 as ***
  • Emergence of young human genes after a burst of retroposition in primates.
    PLoS Biology, Vol. 3, No. 11. (2005), e357.
    by AC Marques, I Dupanloup, N Vinckenbosch, A Reymond, H Kaessmann
    posted to comparative-neuro evolution evolutionary-genomics evolvability genome-association genome-transposon genome-variation phylogeny by balicea on 2008-01-22 18:47:16 as ***
  • Sexual Selection and the Adaptive Evolution of Mammalian Ejaculate Proteins
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 207-219.
    by Steven A Ramm, Peter L Oliver, Chris P Ponting, Paula Stockley, Richard D Emes
    posted to evolution evolutionary-genomics evolutionary-proteomics evolvability gene-expression neuro-chem neuro-genetics phylogeny reproduction by balicea on 2008-01-22 18:26:43 as *** along with 2 people stevanspringer renatomilani
  • Evolution of Duplicate Gene Expression in Polyploid and Hybrid Plants
    J Hered, Vol. 98, No. 2. (1 March 2007), pp. 136-141.
    by Keith L Adams
    posted to evolution evolutionary-genomics gene-expression genome-structure genome-variation heredity phylogeny by balicea on 2008-01-22 17:09:42 as *** along with 5 people and 1 group dandaman cmm echinotrix TaqSys natstreet FAB-lab
  • Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Manuel Irimia, Jakob Rukov, David Penny, Scott Roy
    posted to evolution evolutionary-genomics evolutionary-proteomics evolvability genome-splicings phylogeny by balicea on 2008-01-22 02:49:21 as *** along with 1 person stajich
  • Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study
    Genome Biology, Vol. 8 (08 November 2007), R236.
    by Arjun Bhutkar, William M Gelbart, Temple F Smith
    posted to evolution evolutionary-genomics genome-structure genome-variation phylogeny whole-genomic by balicea on 2008-01-20 04:37:22 as *** along with 5 people and 1 group isimpson indigoviolet dpollard maximilianh hpaces EisenLab
  • Adaptive and phylogenetic influences on musculoskeletal design in cercopithecine primates.
    Journal of Experimental Biology, Vol. 205 (2002), pp. 3399-3412.
    by JD Polk
    posted to animal-model evolvability movement-science musculoskeletal_systems neuro-mechanics phylogeny by balicea on 2008-01-16 20:00:55 as ***
  • Genetic distance and species formation in evolving populations
    Journal of Molecular Evolution, Vol. 35, No. 5. (1 November 1992), pp. 454-465.
    by Paul G Higgs, Bernard Derrida
    posted to evolution evolutionary-genomics phylogeny speciation by balicea on 2008-01-14 20:50:31 as *** along with 1 person and 1 group kinestetika microbiology_nijmegen
  • Multiple genome rearrangement and breakpoint phylogeny.
    J Comput Biol, Vol. 5, No. 3. (1998), pp. 555-570.
    by D Sankoff, M Blanchette
    posted to evolution evolutionary-genomics genome-structure genome-variation phylogeny whole-genomic by balicea on 2008-01-14 19:10:14 as *** along with 1 person maximilianh
  • An information-based sequence distance and its application to whole mitochondrial genome phylogeny
    Bioinformatics, Vol. 17, No. 2. (1 February 2001), pp. 149-154.
    by Ming Li, Jonathan H Badger, Xin Chen, Sam Kwong, Paul Kearney, Haoyong Zhang
    posted to evo-computation evolution evolutionary-genomics genome-variation informatics information-theory phylogeny by balicea on 2008-01-09 18:20:59 as *** along with 1 person karipuf
  • Mathematical Models of Social Evolution: A Guide for the Perplexed
    (15 March 2007)
    by Richard Mcelreath, Robert Boyd
    posted to behavior cultural-evolution evolution evolution-of-intelligence learning-and-memory phylogeny by balicea on 2008-01-02 07:33:44 as *** along with 2 people and 2 groups heintz jvf666 folk_epistemology CBBL
  • A phylogenetic approach to cultural evolution.
    Trends Ecol Evol, Vol. 20, No. 3. (March 2005), pp. 116-121.
    by R Mace, CJ Holden
    posted to behavior coevolution cultural-evolution evolution evolution-of-intelligence learning-and-memory phylogeny by balicea on 2008-01-02 07:29:37 as *** along with 2 people scis0000001 larios
  • Towards a unified science of cultural evolution.
    Behav Brain Sci, Vol. 29, No. 4. (August 2006), pp. 329-347.
    by Alex Mesoudi, Andrew Whiten, Kevin N N Laland
    posted to behavior coevolution cultural-evolution evolution evolution-of-intelligence evolvability learning-and-memory modeling-and-simulation phylogeny by balicea on 2008-01-02 07:28:05 as *** along with 3 people and 1 group fcummins heintz larios folk_epistemology
  • Evolutionarily conserved genes preferentially accumulate introns.
    Genome Res (10 May 2007)
    by Liran Carmel, Igor B B Rogozin, Yuri I I Wolf, Eugene V V Koonin
    posted to evolution evolutionary-genomics evolvability genome-variation nat-selection-tests phylogeny systems-biology whole-genomic by balicea on 2007-12-31 08:27:05 as *** along with 5 people and 2 groups dchughes djkt lilou cabbagezs xingxu G4ID Genetics-of-Gambling
  • The developmental genetics of homology
    Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 473-479.
    by Günter P Wagner
    posted to development evo-devo genotype-to-phenotype growth-regulation phylogeny by balicea on 2007-12-31 08:22:53 as *** along with 3 people and 2 groups skhadar dchughes zwang G4ID Genetics-of-Gambling
  • Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e247.
    by Jingchun Zhu, Zachary J Sanborn, Mark Diekhans, Craig B Lowe, Tom H Pringle, David Haussler
    posted to comparative-neuro evolution evolutionary-genomics genome-variation heredity informatics phylogeny whole-genomic by balicea on 2007-12-27 00:04:38 as *** along with 5 people bpcusack djkt grahamc wenhan nklee
  • OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
    Genome Research, Vol. 13 (2003), pp. 2178-2189.
    by L Li, CJ Stoeckert, DS Roos
    posted to evolution evolutionary-genomics genome-variation orthologs-paralogs phylogeny whole-genomic by balicea on 2007-12-26 07:20:27 as ***
  • Why are olfactory systems of different animals so similar?
    Brain Behav Evol, Vol. 59, No. 5-6. (2002), pp. 273-293.
    by HL Eisthen
    posted to comparative-neuro evolution evolvability phylogeny sensory-systems by balicea on 2007-12-10 18:55:35 as *** along with 1 person yama_tah
  • Fast Recovery of evolutionary trees with thousands of nodes.
    Journal of Computational Biology, Vol. 9, No. 2. (2002), pp. 277-297.
    by M Csuros
    posted to combinatorics evolution evolutionary-genomics evolutionary-proteomics graph-theory modeling-and-simulation nat-selection-tests phylogeny by balicea on 2007-12-10 18:21:13 as ***
  • Trees within trees: genes and species, molecules and morphology.
    Systematic Biology, Vol. 46, No. 3. (1997), pp. 537-553.
    by JJ Doyle
    posted to comparative-neuro evolution modeling-and-simulation nat-selection-tests phylogeny by balicea on 2007-12-10 18:15:49 as ***
  • Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution
    PLoS Biology, Vol. 2, No. 7. (2004), 0937.
    by A Fortna, Y Kim, E Maclaren, K Marshall, G Hahn, L Meltesen, M Brenton, R Hink, S Burgers, T Hernandez-Boussard, A Karimpour-Fard, D Glueck, L Mcgavran, R Berry, J Pollack, JM Sikela
    posted to comparative-neuro evolutionary-genomics phylogeny by balicea on 2007-10-24 14:58:26 as ***
  • Functionality of Intergenic Transcription: An Evolutionary Comparison
    PLoS Genetics, Vol. preprint, No. 2006. (1 August 2006)
    by Philipp Khaitovich, Janet Kelso, Henriette Franz, Johann Visagie, Thomas Giger, Sabrina Joerchel, Ekkehard Petzold, Richard E Green, Michael Lachmann, Svante Pääbo
    posted to evolution gene-expression general-physiology molecular-general molecular-signaling phylogeny by balicea on 2006-09-24 20:49:05 as ***
  • The genetic architecture of normal variation in human pigmentation: an evolutionary perspective and model
    Human Molecular Genetics, Vol. 15 (2006), pp. R176-R181.
    by B Mcevoy, S Beleza, MD Shriver
    posted to evolution molecular-general molecular-signaling phylogeny by balicea on 2006-09-24 20:35:08 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Molecular taxonomy of major neuronal classes in the adult mouse forebrain
    Nature Neuroscience, Vol. 9, No. 1. (20 December 2005), pp. 99-107.
    by Ken Sugino, Chris M Hempel, Mark N Miller, Alexis M Hattox, Peter Shapiro, Caizi Wu, Josh Z Huang, Sacha B Nelson
    posted to brain-anatomy gene-expression phylogeny by balicea on 2006-09-18 19:26:52 as *** along with 1 person and 1 group jeremymiller GeschwindLab
  • Haplotype-specific linkage disequilibrium patterns define the genetic topography of the human MHC
    Hum. Mol. Genet., Vol. 12, No. 6. (15 March 2003), pp. 647-656.
    by Tariq Ahmad, Matt Neville, Sara E Marshall, Alessandro Armuzzi, Kim Mulcahy-Hawes, Jonathan Crawshaw, Hiroe Sato, Khoon-Lin Ling, Martin Barnardo, Sue Goldthorpe, Robert Walton, Mike Bunce, Derek P Jewell, Ken I Welsh
    posted to evolution molecular-general phylogeny by balicea on 2006-09-07 18:54:14 as ***
  • Analysis of Variation and Speciation in the Closely Related Species Arabidopsis halleri and A. lyrata.
    Genetics, Vol. 166 (2004), pp. 373-388.
    by SE Ramos-Onsins, BE Stranger, T Mitchell-Oldsb, M Aguadea
    posted to animal-model molecular-general phylogeny by balicea on 2006-09-07 18:39:29 as ***
  • The challenges of modeling mammalian biocomplexity
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1268-1274.
    by Jeremy K Nicholson, Elaine Holmes, John C Lindon, Ian D Wilson
    posted to animal-model evolution modeling-and-simulation molecular-general phylogeny by balicea on 2006-08-31 21:41:55 as *** along with 2 people rklancer fishtank
  • A Hidden Markov Model approach to variation among sites in rate of evolution.
    Mol Biol Evol, Vol. 13, No. 1. (January 1996), pp. 93-104.
    by J Felsenstein, GA Churchill
    posted to applied-math evolution phylogeny by balicea on 2006-07-28 21:32:49 as ** along with 3 people gennaro zmasek tale
  • Algorithms for drawing graphs: an annotated bibliography
    Computational Geometry, Vol. 4, No. 5. (October 1994), pp. 235-282.
    by Giuseppe D Battista, Peter Eades, Roberto Tamassia, Ioannis G Tollis
    posted to informatics phylogeny by balicea on 2006-07-08 05:25:37 as *** along with 4 people and 1 group mslima nkorf blindAngle csacca Semantic-Social-Networks
  • An O(n log n) algorithm for the maximum agreement subtree problem ofr binary trees
    Siam Journal of Computing, Vol. 30, No. 5. (2 April 2000), pp. 1385-1404.
    by Richard Cole, Martin Farach-Colton, Ramesh Hariharan, Teresa Przytycka, Mikkel Thorup
    posted to applied-math evolution phylogeny by balicea on 2006-07-08 05:24:51 as *** along with 1 person blindAngle
  • Comparison of phylogenetic trees
    Mathematical Biosciences, Vol. 53, No. 1-2. (February 1981), pp. 131-147.
    by DF Robinson, LR Foulds
    posted to applied-math evolution phylogeny by balicea on 2006-07-08 05:22:33 as *** along with 2 people jmeppley blindAngle
  • The phylogeny of SARS coronavirus.
    Arch Virol, Vol. 149, No. 3. (March 2004), pp. 621-624.
    by AJ Gibbs, MJ Gibbs, JS Armstrong
    posted to evolution phylogeny biological-inspired-modeling by balicea on 2006-07-08 05:19:38 as *** along with 2 people jen_drake wzg188
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