bandrewfox's library 58 articles Export

	Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data. [My Copy] BMC bioinformatics, Vol. 8 (25 October 2007), 412. by James J. Chen, Huey-Miin M. Hsueh, Robert R. Delongchamp, Chien-Ju J. Lin, Chen-An A. Tsai posted to microarray by bandrewfox on 2009-04-23 07:34:00 as along with 9 people daforerog surajitray lwaldron jfr shigepong GeeSharpMinor shikin giovenko guhjy
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to solexa by bandrewfox on 2009-04-23 07:23:33 as along with 46 people and 2 groups cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. [My Copy] BMC Genomics, Vol. 7 (2006) by Y. Wang, C. Barbacioru, F. Hyland, et al.W. Xiao, K. L. Hunkapiller, J. Blake, F. Chan, C. Gonzalez, L. Zhang, R. R. Samaha posted to microarray by bandrewfox on 2009-04-23 07:22:12 as along with 4 people mdharsee guhjy mayercd ghattem
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted to solexa by bandrewfox on 2009-04-23 07:15:59 as along with 14 people and 1 group hzoltan manduca jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 n00c ghattem xingxu cajunsushi SIMR bioinformatics
	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis [My Copy] Hum. Mol. Genet. (14 November 2008), ddn388. by Sergio E. Baranzini, Joanne Wang, Rachel A. Gibson, et al.Nicholas Galwey, Yvonne Naegelin, Frederik Barkhof, Ernst-Wilhelm Radue, Raija L. Lindberg, Bernard Uitdehaag, Michael R. Johnson, Aspasia Angelakopoulou, Leslie Hall, Jill C. Richardson, Rabinder K. Prinjha, Achim Gass, Jeroen J. Geurts, Jolijn Kragt, Madeleine Sombekke, Hugo Vrenken, Pamela Qualley, Robin R. Lincoln, Refujia Gomez, Stacy J. Caillier, Michaela F. George, Hourieh Mousavi, Rosa Guerrero, Darin T. Okuda, Bruce A. Cree, Ari Green, Emmanuelle Waubant, Douglas S. Goodin, Daniel Pelletier, Paul M. Matthews, Stephen L. Hauser, Ludwig Kappos, Chris H. Polman, Jorge R. Oksenberg posted to gwa by bandrewfox on 2009-04-23 06:58:01 as along with 2 people ivanek pkonings
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell Jones, Roderick Jensen, et al.Stephen Harris, Roger Perkins, Federico Goodsaid, Lei Guo, Lisa Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin Barbacioru, Vincent Bertholet, Xiaoxi Cao, Tzu M. Chu, Patrick Collins, Xiao H. Fan, Felix Frueh, James Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest Kawasaki, Quan Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron Peterson, Raj Puri, Richard Shippy, Zhenqiang Su, Yongming Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Wang, Janet Warrington, James Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell Wolfinger, Weida Tong posted to microarray by bandrewfox on 2009-04-23 06:42:04 as along with 16 people and 1 group mayercd Zephyrus daforerog oliviawi zufar lwaldron mdharsee shikin rdiaz jfr ugengma dswan guhjy GeeSharpMinor ptrobajo Jonesy Bioinformatics
	The current excitement about copy-number variation: how it relates to gene duplications and protein families. [My Copy] Current opinion in structural biology, Vol. 18, No. 3. (27 June 2008), pp. 366-374. by J. O. Korbel, P. M. Kim, X. Chen, et al.A. E. Urban, S. Weissman, M. Snyder, M. B. Gerstein posted to evolution by bandrewfox on 2008-10-17 23:07:40 as along with 7 people biovils jrvalcourt bcondon klo cabbagesofdoom Neeperando bpcusack
	Role of deficient type III interferon-λ production in asthma exacerbations [My Copy] Nature Medicine, Vol. 12, No. 9. (13 August 2006), pp. 1023-1026. by Marco Contoli, Simon D. Message, Vasile Laza-Stanca, et al.Michael R. Edwards, Peter A. B. Wark, Nathan W. Bartlett, Tatiana Kebadze, Patrick Mallia, Luminita A. Stanciu, Hayley L. Parker, Louise Slater, Anita Lewis-Antes, Onn M. Kon, Stephen T. Holgate, Donna E. Davies, Sergei V. Kotenko, Alberto Papi, Sebastian L. Johnston posted to il29 by bandrewfox on 2008-10-14 22:14:04 as
	Identification of a second group of type I IFNs in fish sheds light on IFN evolution in vertebrates. [My Copy] Journal of immunology (Baltimore, Md. : 1950), Vol. 179, No. 6. (15 September 2007), pp. 3859-3871. by J. Zou, C. Tafalla, J. Truckle, C. J. Secombes posted to evolution interferons by bandrewfox on 2008-08-20 21:33:26 as along with 1 person russberg
	Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system. [My Copy] Journal of immunology (Baltimore, Md. : 1950), Vol. 178, No. 7. (1 April 2007), pp. 4385-4394. by J. P. Levraud, P. Boudinot, I. Colin, et al.A. Benmansour, N. Peyrieras, P. Herbomel, G. Lutfalla posted to evolution interferons by bandrewfox on 2008-06-14 00:10:03 as along with 2 people russberg boudinot
	Interferons, interferon-like cytokines, and their receptors. [My Copy] Immunological reviews, Vol. 202 (December 2004), pp. 8-32. by S. Pestka, C. D. Krause, M. R. Walter posted to evolution interferons by bandrewfox on 2008-06-14 00:08:19 as along with 1 person AJCann
	Evolution of the Class 2 cytokines and receptors, and discovery of new friends and relatives. [My Copy] Pharmacology & therapeutics, Vol. 106, No. 3. (June 2005), pp. 299-346. by C. D. Krause, S. Pestka posted to evolution interferons by bandrewfox on 2008-06-14 00:05:04 as along with 1 person mtagaya
	Prediction of complete gene structures in human genomic DNA [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 78-94. by C. Burge posted to bioinformatics by bandrewfox on 2008-05-22 22:35:40 as along with 13 people and 2 groups viren4388 rshe jmartin49 Ayest pcahan1 indigoviolet kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso nklee Bioinformatics EisenLab
	A new method for predicting signal sequence cleavage sites. [My Copy] Nucleic acids research, Vol. 14, No. 11. (11 June 1986), pp. 4683-4690. by G. von Heijne posted to bioinformatics by bandrewfox on 2008-05-22 22:34:15 as
	Evolution of interferon genes. [My Copy] Interferon, Vol. 6 (1985), pp. 1-30. by T. Miyata, H. Hayashida, R. Kikuno, H. Toh, Y. Kawade posted to evolution interferons by bandrewfox on 2008-05-22 18:23:57 as
	Modulation of the human cytokine response by interferon lambda-1 (IFN-λ1/IL-29) [My Copy] Genes and Immunity, Vol. 8, No. current. (2007), pp. 13-20. by W. J. Jordan, J. Eskdale, M. Boniotto, M. Rodia, D. Kellner, G. Gallagher posted to il29 by bandrewfox on 2008-05-22 00:17:50 as
	The interferon system of teleost fish. [My Copy] Fish & shellfish immunology, Vol. 20, No. 2. (February 2006), pp. 172-191. by B. Robertsen posted to evolution il29 interferons review by bandrewfox on 2008-05-21 21:42:09 as
	IL-28 and IL-29: newcomers to the interferon family. [My Copy] Biochimie, Vol. 89, No. 6-7. (l 2007), pp. 729-734. by G. Uzé, D. Monneron posted to il29 review by bandrewfox on 2008-05-21 21:40:40 as along with 1 person mtagaya
	IFN-lambda: novel antiviral cytokines. [My Copy] Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, Vol. 26, No. 6. (June 2006), pp. 373-379. by N. Ank, H. West, S. R. Paludan posted to il29 review by bandrewfox on 2008-05-21 21:39:03 as along with 1 person mtagaya
	Role of the Interleukin (IL)-28 Receptor Tyrosine Residues for Antiviral and Antiproliferative Activity of IL-29/Interferon-lambda1: SIMILARITIES WITH TYPE I INTERFERON SIGNALING [My Copy] J. Biol. Chem., Vol. 279, No. 31. (30 July 2004), pp. 32269-32274. by Laure Dumoutier, Amel Tounsi, Thomas Michiels, Caroline Sommereyns, Sergei V. Kotenko, Jean-Christophe Renauld posted to il29 interferons by bandrewfox on 2008-05-21 21:36:22 as
	Matrices for detecting distant relationships [My Copy] In Atlas of protein sequences (1979), pp. 353-358. by R. Schwarz, M. Dayhoff edited by M. Dayhoff posted to evolution by bandrewfox on 2008-05-21 21:31:33 as
	Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. [My Copy] Mol Biol Evol, Vol. 10, No. 3. (May 1993), pp. 512-526. by K. Tamura, M. Nei posted to evolution by bandrewfox on 2008-05-21 21:26:15 as along with 1 person usagi-kirin
	MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 [My Copy] Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1596-1599. by Koichiro Tamura, Joel Dudley, Masatoshi Nei, Sudhir Kumar posted to bioinformatics evolution by bandrewfox on 2008-05-21 21:25:43 as along with 10 people vprieto forest2087 mount_misery daforerog BioNica usagi-kirin ryanraaum natstreet spinaltap526 sanchezbuelna
	Confidence Limits on Phylogenies: An Approach Using the Bootstrap [My Copy] Evolution, Vol. 39, No. 4. (1985), pp. 783-791. by Joseph Felsenstein posted to evolution by bandrewfox on 2008-05-21 21:20:49 as along with 3 people margamvm forest2087 timflutre
	The neighbor-joining method: a new method for reconstructing phylogenetic trees. [My Copy] Molecular biology and evolution, Vol. 4, No. 4. (1 July 1987), pp. 406-425. by N. Saitou, M. Nei posted to evolution by bandrewfox on 2008-05-21 21:18:49 as along with 17 people and 1 group vtraag qiang parnell esyoun forest2087 aprasad mount_misery cawelsh9 cen4ik sandra_yu greger_halltorp taka gelack BioNica usagi-kirin ArtemPankin Auger Dead 60's
	Interleukin 20: discovery, receptor identification, and role in epidermal function. [My Copy] Cell, Vol. 104, No. 1. (12 January 2001), pp. 9-19. by H. Blumberg, D. Conklin, W. F. Xu, et al.A. Grossmann, T. Brender, S. Carollo, M. Eagan, D. Foster, B. A. Haldeman, A. Hammond, H. Haugen, L. Jelinek, J. D. Kelly, K. Madden, M. F. Maurer, J. Parrish-Novak, D. Prunkard, S. Sexson, C. Sprecher, K. Waggie, J. West, T. E. Whitmore, L. Yao, M. K. Kuechle, B. A. Dale, Y. A. Chandrasekher posted to 4hb bioinformatics by bandrewfox on 2008-05-21 21:10:09 as
	Sequence conservation in families whose members have little or no sequence similarity: the four-helical cytokines and cytochromes. [My Copy] J Mol Biol, Vol. 322, No. 1. (6 September 2002), pp. 205-233. by E. E. Hill, V. Morea, C. Chothia posted to cytokine structure by bandrewfox on 2008-05-21 20:55:44 as along with 1 person tjimenez
	Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution? [My Copy] The EMBO journal, Vol. 20, No. 19. (1 October 2001), pp. 5354-5360. by M. J. Betts, R. Guigó, P. Agarwal, R. B. Russell posted to 4hb cytokine intron-phases by bandrewfox on 2008-05-21 20:49:55 as along with 1 person bpcusack
	The Pfam protein families database. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 276-280. by A. Bateman, E. Birney, L. Cerruti, et al.R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall, E. L. Sonnhammer posted to bioinformatics by bandrewfox on 2008-05-21 20:46:14 as along with 12 people and 1 group mgomes thegoose2 shung tharris ziquje Cortel cjeans mirzazadeh wenhan antonkratz IrinaMoreira gulkur C. elegans / WormBase
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to bioinformatics by bandrewfox on 2008-05-21 20:42:46 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	The Human Connectome: A Structural Description of the Human Brain [My Copy] PLoS Comput Biol, Vol. 1, No. 4. (30 September 2005), e42. by Olaf Sporns, Giulio Tononi, Rolf Kötter posted to brain by bandrewfox on 2008-05-08 07:21:42 as along with 15 people and 2 groups knuu jclau adrianna Bolozna flieder yonghe librain dpf carlk pbellec balicea dolhuis josepe suizan jotwin Complex_Brain_Networks SNE
	Reverse transcriptase: Mediator of genomic plasticity [My Copy] Virus Genes, Vol. 11, No. 2. (1 June 1995), pp. 163-179. by Jürgen Brosius, Henri Tiedge posted to interferons intron-phases by bandrewfox on 2008-04-18 22:56:44 as along with 1 person operon
	Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish. [My Copy] BMC genomics, Vol. 4, No. 1. (17 July 2003) by G. Lutfalla, H. Roest Crollius, N. Stange-Thomann, O. Jaillon, K. Mogensen, D. Monneron posted to il29 interferons by bandrewfox on 2008-04-11 20:21:44 as
	Mutation rates in mammalian genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 99, No. 2. (22 January 2002), pp. 803-808. by Sudhir Kumar, Sankar Subramanian posted to evolution by bandrewfox on 2008-03-18 19:37:03 as along with 3 people lesander bpcusack blobbybirdman
	Genomic clocks and evolutionary timescales. [My Copy] Trends Genet, Vol. 19, No. 4. (April 2003), pp. 200-206. by S. Blair Hedges, S. Kumar posted to evolution by bandrewfox on 2008-03-18 19:26:25 as along with 2 people beete aprasad
	Molecular dating: ape bones agree with chicken entrails [My Copy] Trends in Genetics, Vol. 21, No. 2. (February 2005), pp. 89-92. by Galina V. Glazko, Eugene V. Koonin, Igor B. Rogozin posted to evolution by bandrewfox on 2008-03-18 18:54:26 as along with 1 person Erpenbach
	Synaptic theory of working memory. [My Copy] Science (New York, N.Y.), Vol. 319, No. 5869. (14 March 2008), pp. 1543-1546. by Gianluigi Mongillo, Omri Barak, Misha Tsodyks posted to synapse by bandrewfox on 2008-03-18 18:42:00 as along with 18 people and 1 group tarokiritani jmarkow flieder sen_cheng apeyrache fbaroni mattions pgastrein bayesian memming awooga shivakmr davidlott sieglej4 sekulerlab starz1010101 CharlesGaylord davidcsterratt VisionLab
	Error-tolerant identification of peptides in sequence databases by peptide sequence tags. [My Copy] Analytical chemistry, Vol. 66 (Dec 1994), pp. 4390-4399. by M. Mann, M. Wilm posted to peptide by bandrewfox on 2008-03-18 18:31:46 as
	Bioinformatic discovery of novel bioactive peptides. [My Copy] Nature chemical biology, Vol. 3 (Feb 2007), pp. 108-112. by Richard Edwards, Niamh Moran, Marc Devocelle, et al.Aoife Kiernan, Gerardene Meade, William Signac, Martina Foy, Stephen Park, Eimear Dunne, Dermot Kenny, Denis Shields posted to bioinformatics by bandrewfox on 2008-03-18 18:31:46 as
	Cellular uptake mechanisms and potential therapeutic utility of peptidic cell delivery vectors: progress 2001-2006. [My Copy] Medicinal research reviews, Vol. 27 (Nov 2007), pp. 755-795. by Peter M. Fischer posted to peptide by bandrewfox on 2008-03-18 18:31:46 as
	GOurmet: a tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions. [My Copy] BMC bioinformatics, Vol. 7 (xx 2006) by Jason M. Doherty, Lynn K. Carmichael, Jason C. Mills posted to expression by bandrewfox on 2008-03-18 18:31:45 as
	IL-28, IL-29 and their class II cytokine receptor IL-28R. [My Copy] Nature immunology, Vol. 4 (Jan 2003), pp. 63-68. by Paul Sheppard, Wayne Kindsvogel, Wenfeng Xu, et al.Katherine Henderson, Stacy Schlutsmeyer, Theodore Whitmore, Rolf Kuestner, Ursula Garrigues, Carl Birks, Jenny Roraback, Craig Ostrander, Dennis Dong, Jinu Shin, Scott Presnell, Brian Fox, Betty Haldeman, Emily Cooper, David Taft, Teresa Gilbert, Francis Grant, Monica Tackett, William Krivan, Gary Mcknight, Chris Clegg, Don Foster, Kevin Klucher posted to fox by bandrewfox on 2008-03-18 18:31:45 as
	Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. [My Copy] Proteins, Vol. 34 (Jan 1999), pp. 82-95. by K. T. Simons, I. Ruczinski, C. Kooperberg, B. A. Fox, C. Bystroff, D. Baker posted to bioinformatics by bandrewfox on 2008-03-18 18:31:45 as
	Crystal structure of rhodopsin: A G protein-coupled receptor. [My Copy] Science, Vol. 289 (Aug 2000), pp. 739-745. by K. Palczewski, T. Kumasaka, T. Hori, et al.C. A. Behnke, H. Motoshima, B. A. Fox, I. Le Trong, D. C. Teller, T. Okada, R. E. Stenkamp, M. Yamamoto, M. Miyano posted to crystallography by bandrewfox on 2008-03-18 18:31:45 as
	X-Ray diffraction analysis of three-dimensional crystals of bovine rhodopsin obtained from mixed micelles. [My Copy] Journal of structural biology, Vol. 130 (May 2000), pp. 73-80. by T. Okada, I. Le Trong, B. A. Fox, C. A. Behnke, R. E. Stenkamp, K. Palczewski posted to crystallography by bandrewfox on 2008-03-18 18:31:45 as
	Identification of the calcium binding site and a novel ytterbium site in blood coagulation factor XIII by x-ray crystallography. [My Copy] The Journal of biological chemistry, Vol. 274 (Feb 1999), pp. 4917-4923. by B. A. Fox, V. C. Yee, L. C. Pedersen, et al.I. Le Trong, P. D. Bishop, R. E. Stenkamp, D. C. Teller posted to crystallography by bandrewfox on 2008-03-18 18:31:45 as
	Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: The class II cytokine receptors and their ligands in mammals and fish [My Copy] BMC Genomics, Vol. 4 (xx 2003) posted to intron-phases by bandrewfox on 2008-03-18 18:31:45 as
	The IFN-λ Family (IL-28/29) [My Copy] posted to il29 by bandrewfox on 2008-03-18 18:31:45 as
	IL-28 and IL-29: Newcomers to the interferon family [My Copy] Biochimie, Vol. 89 (xx 2007) posted to review by bandrewfox on 2008-03-18 18:31:45 as
	IFN-lambdas mediate antiviral protection through a distinct class II cytokine receptor complex. [My Copy] Nature immunology, Vol. 4 (Jan 2003), pp. 69-77. by Sergei Kotenko, Grant Gallagher, Vitaliy Baurin, et al.Anita L. Antes, Meiling Shen, Nital Shah, Jerome Langer, Faruk Sheikh, Harold Dickensheets, Raymond Donnelly posted to il29 by bandrewfox on 2008-03-18 18:31:45 as

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bandrewfox's library 58 articles Export

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