barry's library 1012 articles Export

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	Single molecule imaging reveals differences in microtubule track selection between Kinesin motors. [My Copy] PLoS biology, Vol. 7, No. 10. (October 2009) by Dawen Cai, Dyke P. McEwen, Jeffery R. Martens, Edgar Meyhofer, Kristen J. Verhey posted to mts molecular_motors kinesin bd_simulation by barry on 2009-10-15 18:11:23 as
	Identification of a strong binding site for kinesin on the microtubule using mutant analysis of tubulin [My Copy] The EMBO Journal, Vol. aop, No. current. (23 November 2006) by Seiichi Uchimura, Yusuke Oguchi, Miho Katsuki, et al.Takeo Usui, Hiroyuki Osada, Jun-Ichi Nikawa, Shin'ichi Ishiwata, Etsuko Muto posted to bd_simulation kinesin molecular_motors tubulin by barry on 2009-05-13 21:44:38 as along with 1 group McCammon
	Evolutionary and functional divergence between the cystic fibrosis transmembrane conductance regulator and related ATP-binding cassette transporters. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (19 November 2008) by I King K. Jordan, Karthik C C. Kota, Guiying Cui, Christopher H H. Thompson, Nael A A. McCarty posted to abc cftr protein_evolution sequence_comparison by barry on 2008-11-24 18:25:20 as along with 1 group McCammon
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry on 2008-10-02 20:24:17 as along with 8 people and 3 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell structural_bioinformatics McCammon Bioinformatics
	An Enzymatic Atavist Revealed in Dual Pathways for Water Activation [My Copy] PLoS Biology, Vol. 6, No. 8. (1 August 2008), e206. by Donghong Min, Helen R. Josephine, Hongzhi Li, et al.Clemens Lakner, Iain S. Macpherson, Gavin J. Naylor, David Swofford, Lizbeth Hedstrom, Wei Yang posted to imp_dehydrogenase qm_mm by barry on 2008-08-26 18:45:20 as along with 3 groups Bioinformatics McCammon structural_bioinformatics
	Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets. [My Copy] Journal of molecular biology, Vol. 377, No. 4. (4 April 2008), pp. 1265-1278. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to protein_evolution protein_structure by barry on 2008-03-20 17:04:58 as along with 2 people and 1 group martainn cdeane structural_bioinformatics
	Signal Propagation in Proteins and Relation to Equilibrium Fluctuations [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e172. by Chakra Chennubhotla, Ivet Bahar posted to allosteric correlated_motions nma protein_dynamics protein_structure time_series_analysis by barry on 2007-09-22 23:29:36 as along with 1 person and 2 groups apaydin structural_bioinformatics Bioinformatics
	A Ras by Any Other Name [My Copy] Mol. Cell. Biol., Vol. 21, No. 5. (1 March 2001), pp. 1441-1443. by Dafna Bar-Sagi posted to ntpases ras review by barry on 2007-09-20 00:03:36 as along with 2 groups structural_bioinformatics Bioinformatics
	Association of putative concave protein-binding sites with the fluctuation behavior of residues. [My Copy] Protein Sci, Vol. 15, No. 10. (October 2006), pp. 2265-2277. by A. Ertekin, R. Nussinov, T. Haliloglu posted to nma protein_dynamics protein_protein by barry on 2007-09-04 20:13:14 as along with 1 person and 2 groups aqeel structural_bioinformatics Bioinformatics
	Conformational diversity and protein evolution--a 60-year-old hypothesis revisited. [My Copy] Trends Biochem Sci, Vol. 28, No. 7. (July 2003), pp. 361-368. by L. C. James, D. S. Tawfik posted to review protein_structure protein_sequence protein_evolution protein_dynamics by barry on 2007-01-18 19:39:58 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Backsteps induced by nucleotide analogs suggest the front head of kinesin is gated by strain [My Copy] Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 103, No. 21. (23 May 2006), pp. 8054-8059. by Nicholas R. Guydosh, Steven M. Block posted to kinesin motor_model by barry on 2006-10-30 19:23:47 as along with 2 groups structural_bioinformatics Bioinformatics
	Experimental assessment of differences between related protein crystal structures. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 55, No. 11. (November 1999), pp. 1878-1884. by G. J. Kleywegt posted to protein_structure structure_comparison structure_determination by barry on 2006-09-29 19:23:13 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Significance of structural changes in proteins: expected errors in refined protein structures. [My Copy] Protein Sci, Vol. 4, No. 11. (November 1995), pp. 2392-2404. by R. M. Stroud, E. B. Fauman posted to protein_sequence structure_comparison by barry on 2006-09-29 19:21:38 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature [My Copy] Nature, Vol. 442, No. 7104. (23 July 2006), pp. 827-830. by Oksana Shlyk-Kerner, Ilan Samish, David Kaftan, et al.Neta Holland, Maruthi P. S. Sai, Hadar Kless, Avigdor Scherz posted to domain_motions protein_design protein_dynamics protein_structure by barry on 2006-08-16 21:45:51 as along with 2 groups structural_bioinformatics Bioinformatics
	Molecular dissection of the inhibitor binding pocket of mitotic kinesin Eg5 reveals mutants that confer resistance to antimitotic agents [My Copy] Journal Of Molecular Biology, Vol. 360, No. 2. (7 July 2006), pp. 360-376. by Sebastien Brier, David Lemaire, Salvatore Debonis, Eric Forest, Frank Kozielski posted to drug_design eg5 inhibitor_design kinesin molecular_motors monastrol protein_dynamics protein_sequence protein_structure by barry on 2006-07-24 19:02:13 as along with 2 groups structural_bioinformatics Bioinformatics
	How kinesins walk, assemble and transport: A birds-eye-view of some unresolved questions [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. In Press, Uncorrected Proof by Krishanu Ray posted to kinesin molecular_motors review by barry on 2006-06-05 19:40:40 as along with 1 person and 2 groups qwermish structural_bioinformatics Bioinformatics
	Molecular motors as cargo transporters in the cell--The good, the bad and the ugly [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. In Press, Uncorrected Proof by Roop Mallik, Steven P. Gross posted to dynein kinesin molecular_motors myosin review by barry on 2006-06-05 19:36:53 as along with 2 groups structural_bioinformatics Bioinformatics
	The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends [My Copy] Nature, Vol. 441, No. 7089., pp. 115-119. by Jonne Helenius, Gary Brouhard, Yannis Kalaidzidis, Stefan Diez, Jonathon Howard posted to electrostatics kin13 kinesin mcak molecular_motors motor_mode motor_model by barry on 2006-05-06 20:52:13 as along with 2 groups structural_bioinformatics Bioinformatics
	Composites of local structure propensities: evidence for local encoding of long-range structure [My Copy] Protein Science: a Publication Of The Protein Society, Vol. 11, No. 1. (January 2002), pp. 18-26. by David Shortle posted to protein_design protein_structure by barry on 2006-04-10 19:44:48 as along with 1 person and 2 groups Einat structural_bioinformatics Bioinformatics
	The penultimate rotamer library [My Copy] Proteins, Vol. 40, No. 3. (15 August 2000), pp. 389-408. by S. C. Lovell, J. M. Word, J. S. Richardson, D. C. Richardson posted to protein_design protein_dynamics protein_structure by barry on 2006-04-10 19:37:07 as along with 3 people and 5 groups csrocha joergkurtwegner LamBras structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Structure validation by Calpha geometry: phi,psi and Cbeta deviation [My Copy] Proteins, Vol. 50, No. 3. (15 February 2003), pp. 437-450. by Simon C. Lovell, Ian W. Davis, Arendall, et al.Paul I. de Bakker, Michael J. Word, Michael G. Prisant, Jane S. Richardson, David C. Richardson posted to protein_design protein_structure by barry on 2006-04-10 19:34:42 as along with 3 people and 6 groups mikelape sangeetha joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug
	Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins [My Copy] Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114. by Daniel M. Weinreich, Nigel F. Delaney, Mark A. Depristo, Daniel L. Hartl posted to protein_design protein_evolution protein_sequence by barry on 2006-04-07 20:25:19 as along with 14 people and 5 groups stevanspringer pansapiens imouthesmp dayjm Einat marcius i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema bpcusack structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
	A lever-arm rotation drives motility of the minus-end-directed kinesin Ncd [My Copy] Nature (28 December 2005) by Nicholas F. Endres, Craig Yoshioka, Ronald A. Milligan, Ronald D. Vale posted to kin14_kar3 kinesin molecular_motors myosin ncd protein_structure by barry on 2006-03-15 20:12:14 as along with 1 person and 2 groups skoch3 structural_bioinformatics Bioinformatics
	Geometry and symmetry presculpt the free-energy landscape of proteins [My Copy] PNAS, Vol. 101, No. 21. (25 May 2004), pp. 7960-7964. by Trinh X. Hoang, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, Amos Maritan posted to protein_design protein_folding protein_structure by barry on 2006-03-08 23:10:47 as along with 3 people and 2 groups ana mtw naitsabes structural_bioinformatics Bioinformatics
	Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 673-692. by A. F. Neuwald, N. Kannan, A. Poleksic, N. Hata, J. S. Liu posted to allosteric bioinf_methods contacts core_residues g_proteins ntpases p-loop protein_design protein_dynamics protein_evolution protein_sequence protein_structure by barry on 2006-01-07 03:57:13 as along with 2 groups structural_bioinformatics Bioinformatics
	Kinesin's moonwalk. [My Copy] Curr Opin Cell Biol (14 December 2005) by Nicholas J J. Carter, Robert A A. Cross posted to kinesin molecular_motors review by barry on 2006-01-02 19:01:59 as along with 1 person and 2 groups shuns structural_bioinformatics Bioinformatics
	Computational alanine scanning of protein-protein interfaces. [My Copy] Science's STKE : signal transduction knowledge environment, Vol. 2004, No. 219. (10 February 2004) by Tanja Kortemme, David E. Kim, David Baker posted to bioinf_methods protein_protein protein_structure by barry on 2005-12-07 23:56:00 as along with 7 people and 6 groups onufriev pablocarb bicko sangeetha blackbart joergkurtwegner skoddet structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug
	An analysis of simultaneous variation in protein structures. [My Copy] Protein Eng, Vol. 10, No. 4. (April 1997), pp. 307-316. by G. Chelvanayagam, A. Eggenschwiler, L. Knecht, G. H. Gonnet, S. A. Benner posted to protein_evolution protein_structure by barry on 2005-12-01 04:18:33 as along with 2 people and 2 groups ana wilbur structural_bioinformatics Bioinformatics
	Characterizing Conserved Structural Contacts by Pair-wise Relative Contacts and Relative Packing Groups [My Copy] Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 706-721. by Bradley J. Holmes, Jerry Tsai posted to bioinf_methods contacts networks protein_design protein_structure structural_bioinformatics structure_comparison by barry on 2005-11-18 18:50:02 as along with 2 people and 2 groups ana Einat structural_bioinformatics Bioinformatics
	Kinetic Effects of Kinesin Switch I and Switch II Mutations [My Copy] The Journal Of Biological Chemistry, Vol. 280, No. 44. (4 November 2005), pp. 37061-37068. by Scott D. Auerbach, Kenneth A. Johnson posted to kinesin molecular_motors mutants swi-swii by barry on 2005-11-07 19:35:37 as along with 2 people and 2 groups shuns imouthesmp structural_bioinformatics Bioinformatics
	The E-Hook of Tubulin Interacts with Kinesin's Head to Increase Processivity and Speed [My Copy] Biophysical Journal, Vol. 89, No. 5. (November 2005), pp. 3223-3234. by Stefan Lakamper, Edgar Meyhofer posted to kin-mtl kinesin molecular_motors motor_mode tubulin by barry on 2005-11-07 19:34:12 as along with 2 people and 2 groups shuns qwermish structural_bioinformatics Bioinformatics
	Small molecule intervention in microtubule-associated human disease [My Copy] Human Molecular Genetics, Vol. 14 (October 2005), pp. R291-R300. by J. M. Gerdes, N. Katsanis posted to cytoskeleton eg5 monastrol tubulin by barry on 2005-10-26 02:23:52 as along with 2 groups structural_bioinformatics Bioinformatics
	Insights into microtubule nucleation from the crystal structure of human γ-tubulin [My Copy] Nature, Vol. 435, No. 7041., pp. 523-527. by Hector Aldaz, Luke M. Rice, Tim Stearns, David A. Agard posted to cytoskeleton protein_structure tubulin by barry on 2005-10-26 00:22:29 as along with 2 groups structural_bioinformatics Bioinformatics
	Structural mechanism of the recovery stroke in the Myosin molecular motor [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 19. (10 May 2005), pp. 6873-6878. by Stefan Fischer, BjÃ¶rn WindshÃ¼gel, Daniel Horak, Kenneth C. Holmes, Jeremy C. Smith posted to molecular_motors myosin protein_structure by barry on 2005-10-14 22:17:22 as along with 3 people and 2 groups ckmyo shuns yalexeev structural_bioinformatics Bioinformatics
	Brownian Dynamics Simulation of Protein-Protein Diffusional Encounter [My Copy] Methods, Vol. 14, No. 3. (March 1998), pp. 329-341. by Razif R. Gabdoulline, Rebecca C. Wade posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 03:54:33 as along with 2 people and 2 groups m_j Martin8223 structural_bioinformatics Bioinformatics
	Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity. [My Copy] Proteins, Vol. 37, No. 3. (15 November 1999), pp. 379-387. by N. Blomberg, R. R. Gabdoulline, M. Nilges, R. C. Wade posted to electrostatics protein_design protein_sequence protein_structure by barry on 2005-10-10 09:29:59 as along with 2 groups structural_bioinformatics Bioinformatics
	Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings. [My Copy] Proc Natl Acad Sci U S A (19 September 2005) by Guillaume Bouvignies, Pau Bernadó, Sebastian Meier, et al.Kyuil Cho, Stephan Grzesiek, Rafael Brüschweiler, Martin Blackledge posted to correlated_motions nmr protein_dynamics by barry on 2005-10-08 00:45:51 as along with 2 people and 2 groups apaydin Guyhiom structural_bioinformatics Bioinformatics
	Automatic Analysis of Protein Conformational Changes by Multiple Linkage Clustering [My Copy] Journal of Molecular Biology, Vol. 253, No. 4. (3 November 1995), pp. 633-647. by Nathalie S. Boutonnet, Marianne J. Rooman, Shoshana J. Wodak posted to bioinf_methods protein_design protein_dynamics protein_structure by barry on 2005-09-28 01:16:22 as along with 2 groups structural_bioinformatics Bioinformatics
	New tools and data for improving structures, using all-atom contacts. [My Copy] Methods Enzymol, Vol. 374 (2003), pp. 385-412. by J. S. Richardson, W. A. Bryan, D. C. Richardson posted to bioinf_methods contacts protein_structure by barry on 2005-09-28 00:56:39 as along with 1 person and 5 groups joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Small-world view of the amino acids that play a key role in protein folding. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002) by M. Vendruscolo, N. V. Dokholyan, E. Paci, M. Karplus posted to protein_design protein_folding small_world by barry on 2005-09-27 23:23:45 as along with 3 people and 8 groups ana shantanu choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Evolutionary information for specifying a protein fold [My Copy] Nature, Vol. 437, No. 7058., pp. 512-518. by Michael Socolich, Steve W. Lockless, William P. Russ, Heather Lee, Kevin H. Gardner, Rama Ranganathan posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence protein_structure by barry on 2005-09-22 22:16:31 as along with 15 people and 5 groups ucbcjbm ana lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Molecular dynamics simulations of evolved collective motions of atoms in the myosin motor domain upon perturbation of the ATPase pocket [My Copy] Biophysical Chemistry, Vol. 115, No. 1. (1 May 2005), pp. 77-85. by Tatsuyuki Kawakubo, Okimasa Okada, Tomoyuki Minami posted to allosteric md_simulation myosin pca protein_dynamics by barry on 2005-09-20 18:41:52 as along with 1 person and 2 groups julien_lv structural_bioinformatics Bioinformatics
	Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding. [My Copy] Protein Sci, Vol. 3, No. 5. (May 1994), pp. 769-778. by D. Fischer, H. Wolfson, S. L. Lin, R. Nussinov posted to bioinf_methods protein_design protein_evolution protein_structure structural_bioinformatics structure_comparison by barry on 2005-09-19 22:03:37 as along with 4 people and 2 groups aalibes shadowman tjimenez chrys structural_bioinformatics Bioinformatics
	Long-range allosteric control of cytoplasmic dynein ATPase activity by the stalk and C-terminal domains. [My Copy] J Biol Chem (18 July 2005) by Peter Höök, Atsushi Mikami, Beth Shafer, Brian T T. Chait, Steven S S. Rosenfeld, Richard B B. Vallee posted to allosteric dynein molecular_motors by barry on 2005-09-19 19:45:30 as along with 2 groups structural_bioinformatics Bioinformatics
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to core_structure fold_space protein_evolution protein_sequence protein_structure review sequence_comparison structure_comparison by barry on 2005-09-13 19:39:01 as along with 18 people and 6 groups ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Small Libraries of Protein Fragments Model Native Protein Structures Accurately [My Copy] Journal of Molecular Biology, Vol. 323, No. 2. (18 October 2002), pp. 297-307. by Rachel Kolodny, Patrice Koehl, Leonidas Guibas, Michael Levitt posted to comparative_model protein_design protein_evolution protein_structure structural_bioinformatics structure_comparison by barry on 2005-09-07 17:59:27 as along with 2 groups structural_bioinformatics Bioinformatics
	Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin. [My Copy] Biophys J (6 May 2005) by Wenjun Zheng, Bernard R R. Brooks posted to kinesin molecular_motors myosin nma protein_dynamics protein_structure by barry on 2005-06-28 19:01:33 as along with 5 people and 2 groups BragilMassoud baaden aqeel shuns qwermish structural_bioinformatics Bioinformatics
	The structure of the myosin VI motor reveals the mechanism of directionality reversal [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 779-785. by Julie Menetrey, Amel Bahloul, Amber Wells, et al.Christopher Yengo, Carl Morris, Lee H. Sweeney, Anne Houdusse posted to molecular_motors myosin myovi protein_structure by barry on 2005-06-27 18:30:42 as along with 2 groups structural_bioinformatics Bioinformatics
	A comparative study of motor-protein motions by using a simple elastic-network model. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 23. (11 November 2003), pp. 13253-13258. by W. Zheng, S. Doniach posted to f1atpase kinesin molecular_motors myosin nma protein_dynamics by barry on 2005-06-24 23:29:09 as along with 5 people and 2 groups abovell aqeel shuns barry2 qwermish structural_bioinformatics Bioinformatics
	Processivity of the single-headed kinesin KIF1A through biased binding to tubulin. [My Copy] Nature, Vol. 424, No. 6948. (31 July 2003), pp. 574-577. by Y. Okada, H. Higuchi, N. Hirokawa posted to kif1a kinesin molecular_motors protein_protein tubulin by barry on 2005-06-24 23:26:22 as along with 1 person and 2 groups qwermish structural_bioinformatics Bioinformatics

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protein_structure	278
molecular_motors	190
review	189
kinesin	145
protein_dynamics	132
md_simulation	93
protein_sequence	83
protein_protein	77
bioinf_methods	76
protein_evolution	69
protein_design	65
nma	50
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
allosteric	39
bd_simulation	38
myosin	37
electrostatics	34
dynein	29
pca	29
ctbp	27
drug_design	26
sequence_comparison	24
eg5	23
ras	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
domain_motions	18
monastrol	18
g_proteins	17
clustering	16
docking	16
bioinformatics	15
coarse_grain	15
core_structure	15
ntpases	14
correlated_motions	13
networks	13
protein_ligand	13
career	12
comparative_model	12
p-loop	12
contacts	11
core_residues	11
hbond	11
fold_space	10
free_energy	9
gotit	9
mts	9
aaa	8
general	8
mine	8
pdz	8
protein_fragments	8
protein_packing	8
sca	8
small_world	8
torsion_angles	8
transcription_factor	8
cargo_attachment	7
conformational_selection	7
dehydron	7
mitosis	7
nachr	7
r	7
cell_cycle_inhibitors	6
cryo_em	6
distance_matrices	6
drug_discovery	6
ion_channels	6
actin	5
binding	5
inhibitor_design	5
microarrays	5
mutants	5
phylogeny	5
replica_exchange	5
adk	4
allostery	4
cancer	4
hsp90	4
myovi	4
ncd	4
ribosome	4
smd	4
accelerated_md	3
adh	3
alex	3
cath	3
chagas	3
coarse-grained	3
dynamic_similarity	3
function_prediction	3
genomic_context	3
gpcr	3
groel	3
guide	3
ion_pairs	3
itc	3
kif1a	3
kin13	3
kin14_kar3	3
membranes	3
myov	3
nadp	3
neck_linker	3
poster	3
protein_function	3
protein-ligand	3
protein-protein	3
residue_annotation	3
server	3
structure_refinement	3
svm	3
swi-swii	3
test	3
tropical_diseases	3
achr	2
advice	2
amber	2
arf	2
bayesian_classifiers	2
beta_sheet	2
brownian_dynamics	2
clipx	2
coiled_coil	2
disorder	2
dna_motor	2
documentation	2
epr	2
fret-fiona	2
go_model	2
graph	2
helix_helix	2
hinge_motion	2
ikk	2
interaction_maps	2
journal_club	2
kin8	2
kini	2
ksca	2
malaria	2
membrane_proteins	2
mm-pbsa	2
motor_mode	2
neural_net	2
nfkb	2
ntp	2
nucleotide_analogues	2
pka	2
pmf	2
protein_dna	2
pxdls	2
rab	2
rho	2
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solvation	2
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student	2
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titration	2
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abc	1
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alpha_actinin	1
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arp3	1
bacteriorhodopsin	1
book2get	1
bpti	1
catalytic_mechanism	1
cftr	1
chip-chip	1
chromokinesin	1
cis_trans	1
citrate_synthase	1
cloud_computing	1
coevolution	1
comparative_genomics	1
complexity	1
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convergent_evolution	1
cracking	1
crystal_packing	1
decision_trees	1
diffusion	1
directed_evolution	1
discussion_free_energy	1
docking_refinement	1
domain_swapping	1
doublecortin	1
ef-g	1
ef-tu	1
em	1
epitopes	1
essay	1
f1atpase	1
fad	1
farnesyltransferase	1
fdh	1
ff99sb	1
flagella	1
flagellar_motor	1
flu	1
fold	1
for_ana	1
force_field	1
fret	1
ftsz	1
funding	1
gaba	1
gdh	1
gene_duplication	1
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gene_finding	1
gene_ontology	1
genome	1
gfp	1
gpus	1
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hiv	1
hiv_integrase	1
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hoh	1
hot_spots	1
hsp104	1
hsp70	1
hydrodynamics	1
hydrophobic	1
immunology	1
imp_dehydrogenase	1
ion_channel	1
jc	1
kar3	1
kinesin_neck	1
kinesin_tail	1
kinetics	1
kinetochores	1
kin_loop5	1
kin-mtl	1
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ldh	1
literature	1
loop_modeling	1
mcak	1
md	1
mdh	1
membrane	1
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mg	1
mmp	1
molecular_moters	1
motor_cargo	1
multiscale	1
nad	1
nadh	1
nemo	1
nice_figure	1
pathways	1
pcna	1
pcp	1
pdb	1
perl	1
pgdh	1
phosphorylation	1
power_law	1
programming	1
proline	1
promoter_finding	1
promoter_identification	1
protein_annotation	1
protein_engineering	1
protein_stability	1
protein_strcture	1
protonation	1
ptms	1
qm	1
qm_mm	1
rabkinesin	1
rafts	1
ran	1
residue_effect	1
rna	1
rna_dynamics	1
rna_polymerase	1
roc	1
sas	1
scop	1
sequence_conservation	1
sequencing	1
sheer_motion	1
siginal_transduction	1
similarity	1
single_molecule	1
smallrna	1
sos	1
species_evolution	1
structural_genomics	1
structure_alignment	1
superamolecular	1
systems_biology	1
torsion	1
transition_state	1
tyrosine_kinase	1
tyrosine_phosphatases	1
ubiqutin	1
umbrella	1
virulence_factors	1
virus	1
wavelets	1
wham	1
wireing_digrams	1

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