barry's correlated_mutations [22 articles] Export

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	Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters. [My Copy] PLoS computational biology, Vol. 5, No. 10. (2 October 2009), e1000522. by Jouhyun Jeon, Jae-Seong S. Yang, Sanguk Kim posted to sequence_conservation correlated_mutations by barry on 2009-10-30 17:47:40 as along with 2 people and 2 groups dfdong barriot structural_bioinformatics Bioinformatics
	Graphical models of protein-protein interaction specificity from correlated mutations and interaction data [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2 February 2009), pp. 911-929. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to correlated_mutations pdz protein_protein by barry on 2009-03-25 21:58:54 as along with 5 people and 2 groups dfdong sobolevnrm AliC qluo RebeccaHamer Orengo Group Journal Picks baker-group
	Correlated mutation analyses on super-family alignments reveal functionally important residues. [My Copy] Proteins, Vol. 76, No. 3. (15 August 2009), pp. 608-616. by Remko K. Kuipers, Henk-Jan J. Joosten, Eugene Verwiel, et al.Sjoerd Paans, Jasper Akerboom, John van der Oost, Nicole G. Leferink, Willem J. van Berkel, Gert Vriend, Peter J. Schaap posted to correlated_mutations sca by barry on 2009-03-25 21:30:22 as along with 5 people and 3 groups mgomes qluo AliC RebeccaHamer sobolevnrm Orengo Group Journal Picks Bioinformatics baker-group
	Coevolution in defining the functional specificity [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 75, No. 1. (April 2009), pp. 231-240. by Saikat Chakrabarti, Anna R. Panchenko posted to correlated_mutations sca by barry on 2009-03-16 06:42:13 as along with 2 people qluo jameswasmuth
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted to correlated_mutations protein_protein by barry on 2009-01-10 02:15:22 as along with 11 people and 2 groups mgomes biomcgary chica druvus sobolevnrm mhofree grahamc zwang marti reyez paulschlesinger baker-group Bioinformatics
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to allosteric correlated_mutations protein_design sca by barry on 2008-10-17 03:06:03 as along with 7 people and 4 groups sobolevnrm jbhiatt lflorez cactus marck i000 paulschlesinger baker-group structural_bioinformatics McCammon Bioinformatics
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry on 2008-10-02 20:24:17 as along with 8 people and 3 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell structural_bioinformatics McCammon Bioinformatics
	Statistical Coupling Analysis of Aspartic Proteinases Based on Crystal Structures of the Trichoderma reesei Enzyme and Its Complex with Pepstatin A [My Copy] Journal of Molecular Biology, Vol. 382, No. 3. (10 October 2008), pp. 763-778. by Alessandro S. Nascimento, Sandra Krauchenco, Alexander M. Golubev, Alla Gustchina, Alexander Wlodawer, Igor Polikarpov posted to correlated_mutations protein_sequence protein_structure sca by barry on 2008-09-04 02:24:58 as
	Analysis of the residue-residue coevolution network and the functionally important residues in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Byung-Chul Lee, Keunwan Park, Dongsup Kim posted to correlated_mutations protein_sequence protein_structure by barry on 2008-03-20 00:40:27 as along with 7 people and 2 groups neils sobolevnrm mingzhi penpen926 scienbox wilbur friendpine structural_bioinformatics baker-group
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform (13 November 2007), bbm052. by David S. Horner, Walter Pirovano, Graziano Pesole posted to correlated_mutations review by barry on 2007-11-27 23:34:46 as along with 6 people and 3 groups mgomes qluo RebeccaHamer zwang sobolevnrm Lombardo_7 structural_bioinformatics Bioinformatics baker-group
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted to sca g_proteins correlated_mutations contacts by barry on 2007-02-05 21:58:17 as along with 5 people and 5 groups qluo lna Einat marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Local complexity of amino acid interactions in a protein core. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116. by R. K. Jain, R. Ranganathan posted to core_residues core_structure correlated_mutations protein_design protein_structure by barry on 2006-09-29 19:24:22 as along with 5 people and 4 groups ana lna marcius gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Detection and reduction of evolutionary noise in correlated mutation analysis [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253. by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz posted to correlated_mutations sequence_comparison by barry on 2006-01-25 04:24:16 as along with 3 people and 2 groups orr gbart cjeans structural_bioinformatics Bioinformatics
	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted to contacts correlated_motions correlated_mutations pdz sequence_comparison by barry on 2006-01-25 04:17:37 as along with 8 people and 2 groups dfdong ana gbart cjeans tale friendpine ca3295 Lombardo_7 structural_bioinformatics Bioinformatics
	Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion [My Copy] Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354. by Nobuyuki Ota, David A. Agard posted to allosteric contacts correlated_motions correlated_mutations md_simulation by barry on 2006-01-24 18:24:55 as along with 3 people and 2 groups pansapiens lna choonpeng structural_bioinformatics Bioinformatics
	Prediction of functional specificity determinants from protein sequences using log-likelihood ratios [My Copy] Bioinformatics (8 August 2005) by J. Pei, W. Cai, L. N. Kinch, N. V. Grishin posted to bioinf_methods correlated_mutations protein_sequence by barry on 2005-12-01 04:21:08 as along with 2 people and 2 groups ana Einat structural_bioinformatics Bioinformatics
	Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 994-999. by R. A. Estabrook, J. Luo, M. M. Purdy, et al.V. Sharma, P. Weakliem, T. C. Bruice, N. O. Reich posted to correlated_motions correlated_mutations protein_design protein_dynamics protein_evolution by barry on 2005-10-26 00:16:13 as along with 5 people and 2 groups dfdong ana pansapiens dimka gbart structural_bioinformatics Bioinformatics
	Natural-like function in artificial WW domains [My Copy] Nature, Vol. 437, No. 7058., pp. 579-583. by William P. Russ, Drew M. Lowery, Prashant Mishra, Michael B. Yaffe, Rama Ranganathan posted to correlated_mutations protein_design protein_sequence protein_structure by barry on 2005-09-22 22:31:34 as along with 6 people and 5 groups ana balajis marcius caporaso bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Structural biologyForm and function instructions [My Copy] Nature, Vol. 437, No. 7058. (21 September 2005), pp. 486-487. by Jeffery W. Kelly posted to correlated_mutations protein_design by barry on 2005-09-22 22:29:11 as along with 2 people and 2 groups ana dayjm structural_bioinformatics Bioinformatics
	Evolutionary information for specifying a protein fold [My Copy] Nature, Vol. 437, No. 7058., pp. 512-518. by Michael Socolich, Steve W. Lockless, William P. Russ, Heather Lee, Kevin H. Gardner, Rama Ranganathan posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence protein_structure by barry on 2005-09-22 22:16:31 as along with 16 people and 5 groups dfdong ucbcjbm ana lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	A method to predict functional residues in proteins. [My Copy] Nat Struct Biol, Vol. 2, No. 2. (February 1995), pp. 171-178. by G. Casari, C. Sander, A. Valencia posted to bioinf_methods correlated_mutations protein_design protein_sequence sequence_comparison by barry on 2005-09-16 23:37:03 as along with 2 people and 2 groups ramiro2k sriram_s structural_bioinformatics Bioinformatics
	In silico Discovery of Enzyme-Substrate Specificity-determining Residue Clusters [My Copy] Journal of Molecular Biology, Vol. 352, No. 5. (7 October 2005), pp. 1105-1117. by Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist, Nagiza F. Samatova posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence sequence_comparison by barry on 2005-09-15 18:06:44 as along with 1 person and 2 groups cjeans structural_bioinformatics Bioinformatics

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protein_structure	278
molecular_motors	190
review	190
kinesin	145
protein_dynamics	132
md_simulation	93
protein_sequence	83
protein_protein	77
bioinf_methods	76
protein_evolution	69
protein_design	65
nma	50
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
allosteric	39
bd_simulation	38
myosin	37
electrostatics	34
pca	29
dynein	29
ctbp	27
drug_design	26
sequence_comparison	24
eg5	23
ras	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
domain_motions	18
monastrol	18
g_proteins	17
clustering	16
docking	16
bioinformatics	15
coarse_grain	15
core_structure	15
ntpases	14
networks	13
correlated_motions	13
protein_ligand	13
career	12
comparative_model	12
p-loop	12
contacts	11
hbond	11
core_residues	11
fold_space	10
mts	9
gotit	9
free_energy	9
general	9
pdz	8
protein_packing	8
torsion_angles	8
transcription_factor	8
mine	8
protein_fragments	8
sca	8
aaa	8
small_world	8
r	7
conformational_selection	7
dehydron	7
mitosis	7
nachr	7
cargo_attachment	7
cryo_em	6
ion_channels	6
cell_cycle_inhibitors	6
drug_discovery	6
distance_matrices	6
replica_exchange	5
inhibitor_design	5
microarrays	5
phylogeny	5
binding	5
mutants	5
actin	5
allostery	4
hsp90	4
ribosome	4
ncd	4
smd	4
adk	4
cancer	4
myovi	4
membranes	3
residue_annotation	3
adh	3
chagas	3
coarse-grained	3
kin14_kar3	3
kif1a	3
accelerated_md	3
nadp	3
svm	3
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server	3
protein_function	3
swi-swii	3
kin13	3
dynamic_similarity	3
cath	3
poster	3
alex	3
myov	3
itc	3
function_prediction	3
structure_refinement	3
tropical_diseases	3
gpcr	3
groel	3
test	3
neck_linker	3
ion_pairs	3
protein-ligand	3
guide	3
protein-protein	3
pxdls	2
structure_determination	2
documentation	2
clipx	2
subfamily	2
graph	2
arf	2
go_model	2
nucleotide_analogues	2
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dna_motor	2
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protein_dna	2
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advice	2
rab	2
pka	2
ikk	2
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kini	2
ntp	2
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nfkb	2
malaria	2
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ksca	2
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sequence_motif	2
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rho	2
solvent	2
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motor_mode	2
brownian_dynamics	2
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virus	1
doublecortin	1
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ftsz	1
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roc	1
membrane	1
diffusion	1
transition_state	1
abc	1
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arp3	1
smallrna	1
chromokinesin	1
gpus	1
gene_duplication	1
sheer_motion	1
single_molecule	1
protein_stability	1
comparative_genomics	1
fold	1
programming	1
fret	1
tyrosine_phosphatases	1
structural_genomics	1
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landscapes	1
mcak	1
mdh	1
kinetics	1
proline	1
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citrate_synthase	1
similarity	1
ran	1
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wham	1
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essay	1
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fad	1
mg	1
bpti	1
flagellar_motor	1
tyrosine_kinase	1
pgdh	1
hiv_rt	1
docking_refinement	1
rna_polymerase	1
force_field	1
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loop_modeling	1
complexity	1
qm_mm	1
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ef-g	1
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nad	1
gfp	1
promoter_identification	1
sos	1
afm	1
rna	1
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rabkinesin	1
pdb	1
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alpha_actinin	1
afp	1
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bacteriorhodopsin	1
scop	1
multiscale	1
wireing_digrams	1
gaba	1
directed_evolution	1
f1atpase	1
metadynamics	1
residue_effect	1
ubiqutin	1
conformational_search	1
flagella	1
em	1
nadh	1
pcna	1
cis_trans	1
cracking	1
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sas	1
aaindex	1
ldh	1
phosphorylation	1
crystal_packing	1
fdh	1
protein_strcture	1
cftr	1
genome	1
imp_dehydrogenase	1
ion_channel	1
nemo	1
virulence_factors	1
torsion	1
immunology	1
alanine_scanning	1
kinesin_neck	1
protonation	1
pcp	1
species_evolution	1
antibodys	1
wavelets	1
power_law	1
chip-chip	1
hsp70	1
promoter_finding	1
structure_alignment	1
sequencing	1
antiviral_drugs	1
kar3	1
coevolution	1
hydrodynamics	1
farnesyltransferase	1
ptms	1
kin-mtl	1
ef-tu	1
discussion_free_energy	1
siginal_transduction	1
for_ana	1
gene_ontology	1
jc	1
alzheimers	1
gene_finding	1

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