barry's electrostatics [34 articles] Export

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	Fruitful and Futile Encounters along the Association Reaction between Proteins [My Copy] Biophysical Journal, Vol. 96, No. 10. (20 May 2009), pp. 4237-4248. by Michal Harel, Alexander Spaar, Gideon Schreiber posted to brownian_dynamics diffusion electrostatics protein_protein by barry on 2009-06-23 23:55:06 as along with 1 person and 2 groups jmccammon structural_bioinformatics McCammon
	Simulating the electrostatic guidance of the vectorial translocations in hexameric helicases and translocases [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 18. (5 May 2009), pp. 7449-7454. by Hanbin Liu, Yemin Shi, Xiaojiang S. Chen, Arieh Warshel posted to bd_simulation dna_motor electrostatics by barry on 2009-05-21 04:03:23 as along with 1 person and 2 groups sobolevnrm McCammon baker-group
	Species dependence of enzyme-substrate encounter rates for triose phosphate isomerases [My Copy] Proteins, Vol. 31, No. 4. (1998), pp. 406-16. by R. C. Wade, R. R. Gabdoulline, B. A. Luty posted to bd_simulation electrostatics by barry on 2009-05-16 23:36:41 as along with 1 person and 1 group sobolevnrm baker-group
	Large-scale structural analysis of the classical human protein tyrosine phosphatome. [My Copy] Cell, Vol. 136, No. 2. (23 January 2009), pp. 352-363. by A. J. Barr, E. Ugochukwu, W. H. Lee, et al.O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Müller, S. Knapp posted to electrostatics protein_structure structure_comparison tyrosine_phosphatases by barry on 2009-03-30 18:41:30 as along with 2 people and 1 group absterga renatomilani structural_bioinformatics
	Prediction of Protein-Protein Association Rates from a Transition-State Theory [My Copy] Structure, Vol. 15, No. 2. (February 2007), pp. 215-224. by R. Alsallaq, H. Zhou posted to bd_simulation electrostatics protein_protein by barry on 2009-03-13 18:41:53 as along with 2 people and 2 groups apaydin flbarroso structural_bioinformatics McCammon
	Electrostatic rate enhancement and transient complex of protein-protein association [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (11 October 2008), pp. 320-335. by Ramzi Alsallaq, Huan-Xiang Zhou posted to bd_simulation electrostatics by barry on 2009-03-13 18:19:26 as along with 2 people and 3 groups bicko sobolevnrm structural_bioinformatics McCammon baker-group
	Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study [My Copy] Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. 4634-4645. by Johan H. Bredenberg, Cristina Russo, Marcia O. Fenley posted to electrostatics protein_dna solvation by barry on 2008-08-29 19:08:02 as along with 1 person and 3 groups sobolevnrm baker-group McCammon structural_bioinformatics
	Association of Aminoglycosidic Antibiotics with the Ribosomal A-Site Studied with Brownian Dynamics [My Copy] J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 549-559. by Maciej Długosz, Jan M. Antosiewicz, Joanna Trylska posted to brownian_dynamics electrostatics by barry on 2008-07-08 01:22:26 as along with 1 person and 2 groups sobolevnrm baker-group McCammon
	Protonation free energy levels in complex molecular systems [My Copy] Biopolymers, Vol. 9999, No. 9999. (2007), NA. by Jan M. Antosiewicz posted to electrostatics titration by barry on 2008-07-08 01:15:32 as along with 1 person and 2 groups sobolevnrm baker-group McCammon
	The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff [My Copy] Journal of Computational Chemistry, Vol. 29, No. 12. (2008), pp. 1970-1981. by Magdalena Gruziel, Pawel Grochowski, Joanna Trylska posted to electrostatics by barry on 2008-07-08 00:51:34 as along with 1 person and 2 groups RamuAnandakrishnan structural_bioinformatics McCammon
	Pathway and Endpoint Free Energy Calculations for Cyclic Nucleotide Binding to HCN Channels [My Copy] Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. L90-92. by Lei Zhou, Steven A. Siegelbaum posted to binding electrostatics free_energy md_simulation protein-ligand by barry on 2008-07-08 00:49:17 as along with 1 person and 1 group jmccammon McCammon
	Determination of electrostatic interaction energies and protonation state populations in enzyme active sites [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Chresten R. Sondergaard, Lawrence P. Mcintosh, Gianluca Pollastri, Jens E. Nielsen posted to electrostatics solvent by barry on 2007-10-26 22:39:25 as along with 3 people and 2 groups onufriev sobolevnrm skoddet structural_bioinformatics baker-group
	Supercharging Proteins Can Impart Unusual Resilience [My Copy] J. Am. Chem. Soc., Vol. 129, No. 33. (22 August 2007), pp. 10110-10112. by M. S. Lawrence, K. J. Phillips, D. R. Liu posted to electrostatics journal_club protein_design protein_evolution protein_folding by barry on 2007-10-26 22:37:58 as along with 2 people and 3 groups samjlord sobolevnrm structural_bioinformatics moernerlab baker-group
	Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 25. (22 June 2004), pp. 9223-9228. by C. Kiel, T. Selzer, Y. Shaul, G. Schreiber, C. Herrmann posted to ras protein_protein electrostatics bd_simulation by barry on 2007-01-16 23:20:45 as along with 2 groups structural_bioinformatics Bioinformatics
	The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends [My Copy] Nature, Vol. 441, No. 7089., pp. 115-119. by Jonne Helenius, Gary Brouhard, Yannis Kalaidzidis, Stefan Diez, Jonathon Howard posted to electrostatics kin13 kinesin mcak molecular_motors motor_mode motor_model by barry on 2006-05-06 20:52:13 as along with 2 groups structural_bioinformatics Bioinformatics
	Repulsive interactions between polar and apolar atoms in globular proteins. [My Copy] J Mol Biol, Vol. 151, No. 1. (5 September 1981), pp. 199-202. by B. Mao, M. R. Pear, J. A. McCammon, S. H. Northrup posted to bd_simulation electrostatics review by barry on 2005-10-11 23:35:20 as along with 2 groups structural_bioinformatics Bioinformatics
	Simulation of biomolecular diffusion and complex formation. [My Copy] Biophys J, Vol. 49, No. 1. (January 1986), pp. 167-175. by S. A. Allison, S. H. Northrup, J. A. McCammon posted to bd_simulation electrostatics by barry on 2005-10-11 23:33:30 as along with 1 person and 2 groups lyongu structural_bioinformatics Bioinformatics
	Brownian simulation of protein association and reaction [My Copy] International Journal of Quantum Chemistry, Vol. 38, No. S17., pp. 55-71. by Scott H. Northrup, Robert G. Herbert posted to bd_simulation electrostatics review by barry on 2005-10-11 23:33:07 as along with 1 person and 2 groups lyongu structural_bioinformatics Bioinformatics
	Brownian dynamics simulation of protein association. [My Copy] J Comput Aided Mol Des, Vol. 1, No. 4. (January 1988), pp. 291-311. by S. H. Northrup, J. A. Luton, J. O. Boles, J. C. Reynolds posted to bd_simulation electrostatics review by barry on 2005-10-11 23:30:13 as along with 2 groups structural_bioinformatics Bioinformatics
	Brownian dynamics of cytochrome c and cytochrome c peroxidase association. [My Copy] Science, Vol. 241, No. 4861. (1 July 1988), pp. 67-70. by S. H. Northrup, J. O. Boles, J. C. Reynolds posted to bd_simulation electrostatics by barry on 2005-10-11 23:29:50 as along with 2 groups structural_bioinformatics Bioinformatics
	Experimental and theoretical analysis of the interaction between cytochrome c and cytochrome b5. [My Copy] J Bioenerg Biomembr, Vol. 27, No. 3. (June 1995), pp. 311-330. by A. G. Mauk, M. R. Mauk, G. R. Moore, S. H. Northrup posted to bd_simulation electrostatics by barry on 2005-10-11 23:28:22 as along with 2 groups structural_bioinformatics Bioinformatics
	Dynamics of protein-protein docking: cytochrome c and cytochrome c peroxidase revisited. [My Copy] J Biomol Struct Dyn, Vol. 16, No. 2. (October 1998), pp. 413-424. by G. Castro, C. A. Boswell, S. H. Northrup posted to bd_simulation electrostatics by barry on 2005-10-11 23:27:59 as along with 2 groups structural_bioinformatics Bioinformatics
	Kinetics of protein-protein association explained by Brownian dynamics computer simulation. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 8. (15 April 1992), pp. 3338-3342. by S. H. Northrup, H. P. Erickson posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 23:23:18 as along with 2 groups structural_bioinformatics Bioinformatics
	Simulation of electrostatic effects in Fab-antigen complex formation. [My Copy] Eur J Biochem, Vol. 267, No. 15. (August 2000), pp. 4861-4869. by F. Fogolari, R. Ugolini, H. Molinari, P. Viglino, G. Esposito posted to bd_simulation electrostatics by barry on 2005-10-11 23:06:04 as along with 2 groups structural_bioinformatics Bioinformatics
	Brownian Dynamics Simulation of Protein-Protein Diffusional Encounter [My Copy] Methods, Vol. 14, No. 3. (March 1998), pp. 329-341. by Razif R. Gabdoulline, Rebecca C. Wade posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 03:54:33 as along with 2 people and 2 groups m_j Martin8223 structural_bioinformatics Bioinformatics
	Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program [My Copy] Computer Physics Communications, Vol. 91, No. 1-3. (02 September 1995), pp. 57-95. by J. Madura posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 02:25:41 as along with 2 people and 2 groups flbarroso sim82 structural_bioinformatics Bioinformatics
	Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 149-162. by A. H. Elcock, R. R. Gabdoulline, R. C. Wade, J. A. McCammon posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 02:13:35 as along with 3 people and 2 groups dfgreen mikaellund Martin8223 structural_bioinformatics Bioinformatics
	Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f. [My Copy] Biophys J, Vol. 81, No. 6. (December 2001), pp. 3090-3104. by F. De Rienzo, R. R. Gabdoulline, M. C. Menziani, P. G. De Benedetti, R. C. Wade posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 02:09:35 as along with 2 groups structural_bioinformatics Bioinformatics
	Affine invarient comparison of molecular shapes with properties [My Copy] (2004) by X. Zang, C. Bajaj, N. A. Baker posted to bioinf_methods electrostatics by barry on 2005-10-10 09:40:34 as along with 2 groups structural_bioinformatics Bioinformatics
	Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity. [My Copy] Proteins, Vol. 37, No. 3. (15 November 1999), pp. 379-387. by N. Blomberg, R. R. Gabdoulline, M. Nilges, R. C. Wade posted to electrostatics protein_design protein_sequence protein_structure by barry on 2005-10-10 09:29:59 as along with 2 groups structural_bioinformatics Bioinformatics
	Electrotactins: a class of adhesion proteins with conserved electrostatic and structural motifs. [My Copy] Protein Eng, Vol. 11, No. 6. (June 1998), pp. 415-420. by S. A. Botti, C. E. Felder, J. L. Sussman, I. Silman posted to bioinf_methods electrostatics protein_evolution protein_structure by barry on 2005-10-10 09:22:28 as along with 2 groups structural_bioinformatics Bioinformatics
	Conservation of electrostatic properties within enzyme families and superfamilies. [My Copy] Biochemistry, Vol. 42, No. 12. (1 April 2003), pp. 3464-3473. by D. R. Livesay, P. Jambeck, A. Rojnuckarin, S. Subramaniam posted to electrostatics protein_design protein_evolution protein_structure by barry on 2005-10-09 01:28:18 as along with 1 person and 2 groups Einat structural_bioinformatics Bioinformatics
	Mutational Analysis Demonstrates that Specific Electrostatic Interactions can Play a Key Role in the Denatured State Ensemble of Proteins [My Copy] Journal of Molecular Biology, Vol. 353, No. 1. (14 October 2005), pp. 174-185. by Jae-Hyun Cho, Daniel P. Raleigh posted to electrostatics protein_folding by barry on 2005-09-24 00:37:36 as along with 2 groups structural_bioinformatics Bioinformatics
	Electrostatic Potential of Aminoacyl-tRNA Synthetase Navigates tRNA on its Pathway to the Binding Site [My Copy] Journal of Molecular Biology, Vol. 350, No. 5. (29 July 2005), pp. 866-882. by Dmitry Tworowski, Anna V. Feldman, Mark G. Safro posted to electrostatics by barry on 2005-07-07 21:25:25 as along with 2 groups structural_bioinformatics Bioinformatics

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protein_structure	278
molecular_motors	190
review	190
kinesin	145
protein_dynamics	132
md_simulation	93
protein_sequence	83
protein_protein	77
bioinf_methods	76
protein_evolution	69
protein_design	65
nma	50
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
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bd_simulation	38
myosin	37
electrostatics	34
dynein	29
pca	29
ctbp	27
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eg5	23
ras	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
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monastrol	18
g_proteins	17
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docking	16
bioinformatics	15
coarse_grain	15
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career	12
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hbond	11
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aaa	8
mine	8
pdz	8
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torsion_angles	8
transcription_factor	8
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dehydron	7
mitosis	7
nachr	7
r	7
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ion_channels	6
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mutants	5
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myovi	4
ncd	4
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adh	3
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gpcr	3
groel	3
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ion_pairs	3
itc	3
kif1a	3
kin13	3
kin14_kar3	3
membranes	3
myov	3
nadp	3
neck_linker	3
poster	3
protein_function	3
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protein-protein	3
residue_annotation	3
server	3
structure_refinement	3
svm	3
swi-swii	3
test	3
tropical_diseases	3
achr	2
advice	2
amber	2
arf	2
bayesian_classifiers	2
beta_sheet	2
brownian_dynamics	2
clipx	2
coiled_coil	2
disorder	2
dna_motor	2
documentation	2
epr	2
fret-fiona	2
go_model	2
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hinge_motion	2
ikk	2
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journal_club	2
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kini	2
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membrane_proteins	2
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ntp	2
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antibodys	1
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book2get	1
bpti	1
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jc	1
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qm	1
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wavelets	1
wham	1
wireing_digrams	1

barry's electrostatics [34 articles] Export

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