barry's protein_design [65 articles] Export

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	Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by Alexey V V. Gribenko, Mayank M M. Patel, Jiajing Liu, Scott A A. McCallum, Chunyu Wang, George I I. Makhatadze posted to protein_design protein_stability by barry on 2009-02-09 06:41:13 as along with 3 people and 3 groups sobolevnrm grahamc amishp baker-group structural_bioinformatics McCammon
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to allosteric correlated_mutations protein_design sca by barry on 2008-10-17 03:06:03 as along with 7 people and 4 groups sobolevnrm jbhiatt lflorez cactus marck i000 paulschlesinger baker-group structural_bioinformatics McCammon Bioinformatics
	Computational Design of Calmodulin Mutants with up to 900-Fold Increase in Binding Specificity. [My Copy] Journal of molecular biology (27 September 2008) by Eliyahu Yosef, Regina Politi, Mee H H. Choi, Julia M M. Shifman posted to protein_design protein_protein by barry on 2008-10-12 08:12:04 as along with 2 people and 1 group msuarezdiez higueruelo McCammon
	Crystal structure of an extensively simplified variant of bovine pancreatic trypsin inhibitor in which over one-third of the residues are alanines. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (30 September 2008) by Mohammad Monirul M. Islam, Shihori Sohya, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda posted to bpti protein_design protein_structure by barry on 2008-10-05 19:12:36 as along with 3 groups structural_bioinformatics McCammon Bioinformatics
	De Novo Computational Design of Retro-Aldol Enzymes [My Copy] Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391. by Lin Jiang, Eric A. Althoff, Fernando R. Clemente, et al.Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L. Gallaher, Jamie L. Betker, Fujie Tanaka, Carlos F. Barbas, Donald Hilvert, Kendall N. Houk, Barry L. Stoddard, David Baker posted to protein_design protein_ligand structure_refinement by barry on 2008-03-20 00:05:53 as along with 17 people and 4 groups barmak7282 baiaixi fralium qbin1304 alexknight aalibes jwm aprasad dgront zwang sobolevnrm davidlott msuarezdiez scienbox ucbcjbm joseph_x_zhou cambray Biocatalysis and Biotransformation structural_bioinformatics baker-group McCammon
	Supercharging Proteins Can Impart Unusual Resilience [My Copy] J. Am. Chem. Soc., Vol. 129, No. 33. (22 August 2007), pp. 10110-10112. by M. S. Lawrence, K. J. Phillips, D. R. Liu posted to electrostatics journal_club protein_design protein_evolution protein_folding by barry on 2007-10-26 22:37:58 as along with 2 people and 3 groups samjlord sobolevnrm structural_bioinformatics moernerlab baker-group
	Computational Design of a Single Amino Acid Sequence that Can Switch between Two Distinct Protein Folds. [My Copy] J Am Chem Soc, Vol. 128, No. 4. (1 February 2006), pp. 1154-1161. by X. I. Ambroggio, B. Kuhlman posted to protein_design protein_dynamics protein_sequence protein_structure by barry on 2007-09-04 19:32:05 as along with 5 people and 2 groups shuns jwm kevinchannon bethbromley ca3295 structural_bioinformatics Bioinformatics
	Optimization of specificity in a cellular protein interaction network by negative selection. [My Copy] Nature, Vol. 426, No. 6967. (11 December 2003), pp. 676-680. by A. Zarrinpar, S. H. Park, W. A. Lim posted to protein_design protein_evolution protein_protein protein_sequence protein_structure by barry on 2007-09-04 19:25:04 as along with 4 people and 2 groups grahamc cjeans paolomarcatili phoenixzxl structural_bioinformatics Bioinformatics
	Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (20 July 2007), e121. by Sunil Ojha, Elaine C. Meng, Patricia C. Babbitt posted to fad protein_design protein_evolution protein_structure by barry on 2007-07-20 18:33:27 as along with 5 people and 2 groups anuragsethi pradiptaray Einat zwang mdimon structural_bioinformatics Bioinformatics
	Less is more: towards an optimal universal description of protein folds. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by J. D. Szustakowski, S. Kasif, Z. Weng posted to structure_comparison protein_structure protein_fragments protein_design bioinf_methods by barry on 2007-02-07 21:30:06 as along with 3 people and 2 groups ana msierk krishnaJCSG structural_bioinformatics Bioinformatics
	Principles determining the structure of [beta]-sheet barrels in proteins II. The observed structures [My Copy] Journal of Molecular Biology, Vol. 236, No. 5. (11 March 1994), pp. 1382-1400. by Alexey G. Murzin, Arthur M. Lesk, Cyrus Chothia posted to protein_structure protein_packing protein_design beta_sheet by barry on 2007-01-18 19:23:39 as along with 2 groups structural_bioinformatics Bioinformatics
	Principles determining the structure of [beta]-sheet barrels in proteins I. A theoretical analysis [My Copy] Journal of Molecular Biology, Vol. 236, No. 5. (11 March 1994), pp. 1369-1381. by Alexey G. Murzin, Arthur M. Lesk, Cyrus Chothia posted to protein_structure protein_packing protein_design beta_sheet by barry on 2007-01-18 19:21:40 as along with 2 groups structural_bioinformatics Bioinformatics
	Fluctuations in ion pairs and their stabilities in proteins. [My Copy] Proteins, Vol. 43, No. 4. (1 June 2001), pp. 433-454. by S. Kumar, R. Nussinov posted to ion_pairs protein_design protein_structure by barry on 2006-10-26 01:03:28 as along with 2 groups structural_bioinformatics Bioinformatics
	Relationship between ion pair geometries and electrostatic strengths in proteins. [My Copy] Biophys J, Vol. 83, No. 3. (September 2002), pp. 1595-1612. by S. Kumar, R. Nussinov posted to ion_pairs protein_design protein_structure by barry on 2006-10-26 01:01:29 as along with 1 person and 2 groups bicko structural_bioinformatics Bioinformatics
	Structural refinement of protein segments containing secondary structure elements: Local sampling, knowledge-based potentials, and clustering [My Copy] Proteins, Vol. 65, No. 2. (1 November 2006), pp. 463-479. by Jiang Zhu, Li Xie, Barry Honig posted to protein_design protein_fragments protein_structure by barry on 2006-10-10 01:34:49 as along with 2 groups structural_bioinformatics Bioinformatics
	The packing density in proteins: standard radii and volumes1 [My Copy] Journal of Molecular Biology, Vol. 290, No. 1. (02 July 1999), pp. 253-266. by Jerry Tsai, Robin Taylor, Cyrus Chothia, Mark Gerstein posted to core_structure protein_design protein_packing protein_structure by barry on 2006-09-29 19:28:21 as along with 6 people and 3 groups sebk ana bicko blackbart medic0747 sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Volume changes in protein evolution. [My Copy] J Mol Biol, Vol. 236, No. 4. (4 March 1994), pp. 1067-1078. by M. Gerstein, E. L. Sonnhammer, C. Chothia posted to protein_design protein_sequence protein_structure residue_effect by barry on 2006-09-29 19:27:20 as along with 2 people and 2 groups ana kuhn structural_bioinformatics Bioinformatics
	Principles that Determine the Structure of Proteins [My Copy] Annual Review of Biochemistry, Vol. 53, No. 1. (1984), pp. 537-572. by C. Chothia posted to protein_design protein_folding protein_structure by barry on 2006-09-29 19:25:47 as along with 3 people and 2 groups carlosjavierna ana nigham structural_bioinformatics Bioinformatics
	Local complexity of amino acid interactions in a protein core. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116. by R. K. Jain, R. Ranganathan posted to core_residues core_structure correlated_mutations protein_design protein_structure by barry on 2006-09-29 19:24:22 as along with 5 people and 4 groups ana lna marcius gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	The role of geometric complementarity in secondary structure packing: A systematic docking study [My Copy] Protein Sci, Vol. 12, No. 8. (1 August 2003), pp. 1646-1651. by Sulin Jiang, Andrei Tovchigrechko, Ilya A. Vakser posted to docking helix_helix protein_design protein_structure by barry on 2006-09-29 19:22:38 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins [My Copy] Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230. by Arthur M. Lesk, Cyrus Chothia posted to core_residues core_structure protein_design protein_evolution protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-09-29 19:18:54 as along with 2 people and 4 groups ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Helix to helix packing in proteins [My Copy] Journal of Molecular Biology, Vol. 145, No. 1. (5 January 1981), pp. 215-250. by Cyrus Chothia, Michael Levitt, Douglas Richardson posted to helix_helix protein_design protein_structure by barry on 2006-09-29 19:15:32 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 129-133. by Jean-Christophe Gelly, Alexandre G. de Brevern, Serge Hazout posted to protein_design protein_fragments protein_structure by barry on 2006-09-29 19:13:14 as along with 6 people and 4 groups ana dimka ttjoseph marcius nickolay choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature [My Copy] Nature, Vol. 442, No. 7104. (23 July 2006), pp. 827-830. by Oksana Shlyk-Kerner, Ilan Samish, David Kaftan, et al.Neta Holland, Maruthi P. S. Sai, Hadar Kless, Avigdor Scherz posted to domain_motions protein_design protein_dynamics protein_structure by barry on 2006-08-16 21:45:51 as along with 2 groups structural_bioinformatics Bioinformatics
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted to cath protein_design protein_evolution protein_protein protein_structure by barry on 2006-07-07 19:57:04 as along with 4 people and 5 groups martainn yuslinaz marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	Composites of local structure propensities: evidence for local encoding of long-range structure [My Copy] Protein Science: a Publication Of The Protein Society, Vol. 11, No. 1. (January 2002), pp. 18-26. by David Shortle posted to protein_design protein_structure by barry on 2006-04-10 19:44:48 as along with 1 person and 2 groups Einat structural_bioinformatics Bioinformatics
	A physical basis for protein secondary structure [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 25. (1999), pp. 14258-14263. by R. Srinivasan, G. D. Rose posted to protein_design protein_structure by barry on 2006-04-10 19:43:36 as along with 1 person and 2 groups Einat structural_bioinformatics Bioinformatics
	Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns [My Copy] Protein Science: a Publication Of The Protein Society, Vol. 6, No. 7. (July 1997), pp. 1587-1590. by K. F. Han, C. Bystroff, D. Baker posted to protein_design protein_structure by barry on 2006-04-10 19:41:42 as along with 2 groups structural_bioinformatics Bioinformatics
	Rotamer Libraries in the 21st Century [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 4. (1 August 2002), pp. 431-440. by R. Dunbrack posted to protein_design protein_dynamics protein_structure by barry on 2006-04-10 19:39:07 as along with 6 people and 5 groups aqeel msuarezdiez carlosjavierna apaydin joergkurtwegner LamBras structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	The penultimate rotamer library [My Copy] Proteins, Vol. 40, No. 3. (15 August 2000), pp. 389-408. by S. C. Lovell, J. M. Word, J. S. Richardson, D. C. Richardson posted to protein_design protein_dynamics protein_structure by barry on 2006-04-10 19:37:07 as along with 3 people and 5 groups csrocha joergkurtwegner LamBras structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Structure validation by Calpha geometry: phi,psi and Cbeta deviation [My Copy] Proteins, Vol. 50, No. 3. (15 February 2003), pp. 437-450. by Simon C. Lovell, Ian W. Davis, Arendall, et al.Paul I. de Bakker, Michael J. Word, Michael G. Prisant, Jane S. Richardson, David C. Richardson posted to protein_design protein_structure by barry on 2006-04-10 19:34:42 as along with 3 people and 6 groups mikelape sangeetha joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug
	Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms1 [My Copy] Journal of Molecular Biology, Vol. 285, No. 4. (29 January 1999), pp. 1711-1733. by Word, Simon C. Lovell, Thomas H. Labean, et al.Hope C. Taylor, Michael E. Zalis, Brent K. Presley, Jane S. Richardson, David C. Richardson posted to protein_design protein_structure by barry on 2006-04-10 19:27:22 as along with 4 people and 5 groups Diego_Prada aqeel dgront joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins [My Copy] Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114. by Daniel M. Weinreich, Nigel F. Delaney, Mark A. Depristo, Daniel L. Hartl posted to protein_design protein_evolution protein_sequence by barry on 2006-04-07 20:25:19 as along with 14 people and 5 groups stevanspringer pansapiens imouthesmp dayjm Einat marcius i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema bpcusack structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
	Some fundamental aspects of building protein structures from fragment libraries. [My Copy] Protein Sci, Vol. 13, No. 6. (June 2004), pp. 1636-1650. by J. B. Holmes, J. Tsai posted to protein_design protein_fragments by barry on 2006-03-22 20:21:32 as along with 2 people and 2 groups eckart_bindewald wouterboomsma structural_bioinformatics Bioinformatics
	Folding free energy function selects native-like protein sequences in the core but not on the surface [My Copy] PNAS, Vol. 99, No. 21. (15 October 2002), pp. 13554-13559. by Alfonso Jaramillo, Lorenz Wernisch, Stephanie Hery, Shoshana J. Wodak posted to protein_design protein_structure by barry on 2006-03-22 20:18:42 as along with 2 groups structural_bioinformatics Bioinformatics
	Clustering of low-energy conformations near the native structures of small proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 19. (15 September 1998), pp. 11158-11162. by D. Shortle, K. T. Simons, D. Baker posted to protein_design protein_dynamics protein_folding protein_sequence protein_structure by barry on 2006-03-22 20:15:18 as along with 3 people and 5 groups thaliana dgront joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances. [My Copy] J Mol Biol, Vol. 233, No. 3. (5 October 1993), pp. 464-479. by B. V. Reddy, T. L. Blundell posted to protein_design protein_structure by barry on 2006-03-22 20:11:09 as along with 3 people and 2 groups ana pansapiens medic0747 structural_bioinformatics Bioinformatics
	Analysis of interactive packing of secondary structural elements in alpha/beta units in proteins. [My Copy] Protein Sci, Vol. 8, No. 3. (March 1999), pp. 573-586. by B. V. Reddy, H. A. Nagarajaram, T. L. Blundell posted to protein_design protein_structure by barry on 2006-03-22 20:10:20 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Helix packing angle preferences [My Copy] Nat Struct Mol Biol, Vol. 4, No. 11. (November 1997), pp. 915-917. by James U. Bowie posted to protein_design protein_structure by barry on 2006-03-22 20:08:47 as along with 2 people and 2 groups ana pansapiens structural_bioinformatics Bioinformatics
	Geometry and symmetry presculpt the free-energy landscape of proteins [My Copy] PNAS, Vol. 101, No. 21. (25 May 2004), pp. 7960-7964. by Trinh X. Hoang, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, Amos Maritan posted to protein_design protein_folding protein_structure by barry on 2006-03-08 23:10:47 as along with 3 people and 2 groups ana mtw naitsabes structural_bioinformatics Bioinformatics
	Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. [My Copy] J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502. by R. Landgraf, I. Xenarios, D. Eisenberg posted to protein_design protein_protein protein_sequence protein_structure residue_annotation by barry on 2006-03-02 22:37:16 as along with 7 people and 2 groups ramiro2k pansapiens sriram_s cjeans mingzhi Pao-Yang marti structural_bioinformatics Bioinformatics
	Allosteric Regulation of Hsp70 Chaperones by a Proline Switch [My Copy] Molecular Cell, Vol. 21, No. 3. (3 February 2006), pp. 359-367. by Markus Vogel, Bernd Bukau, Matthias P. Mayer posted to allosteric hsp70 protein_design protein_dynamics protein_structure by barry on 2006-02-03 02:52:39 as along with 1 person and 3 groups pdelosri structural_bioinformatics Bioinformatics EPFL_SB_ITP_LBS
	Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 673-692. by A. F. Neuwald, N. Kannan, A. Poleksic, N. Hata, J. S. Liu posted to allosteric bioinf_methods contacts core_residues g_proteins ntpases p-loop protein_design protein_dynamics protein_evolution protein_sequence protein_structure by barry on 2006-01-07 03:57:13 as along with 2 groups structural_bioinformatics Bioinformatics
	Characterizing Conserved Structural Contacts by Pair-wise Relative Contacts and Relative Packing Groups [My Copy] Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 706-721. by Bradley J. Holmes, Jerry Tsai posted to bioinf_methods contacts networks protein_design protein_structure structural_bioinformatics structure_comparison by barry on 2005-11-18 18:50:02 as along with 2 people and 2 groups ana Einat structural_bioinformatics Bioinformatics
	Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 994-999. by R. A. Estabrook, J. Luo, M. M. Purdy, et al.V. Sharma, P. Weakliem, T. C. Bruice, N. O. Reich posted to correlated_motions correlated_mutations protein_design protein_dynamics protein_evolution by barry on 2005-10-26 00:16:13 as along with 4 people and 2 groups ana pansapiens dimka gbart structural_bioinformatics Bioinformatics
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted to contacts core_residues protein_design protein_dynamics protein_evolution protein_folding by barry on 2005-10-12 23:58:56 as along with 4 people and 4 groups dfdong ana Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity. [My Copy] Proteins, Vol. 37, No. 3. (15 November 1999), pp. 379-387. by N. Blomberg, R. R. Gabdoulline, M. Nilges, R. C. Wade posted to electrostatics protein_design protein_sequence protein_structure by barry on 2005-10-10 09:29:59 as along with 2 groups structural_bioinformatics Bioinformatics
	Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme. [My Copy] Proteins, Vol. 30, No. 2. (1 February 1998), pp. 144-154. by S. Hayward, H. J. Berendsen posted to bioinf_methods domain_motions protein_design protein_dynamics protein_structure by barry on 2005-10-09 08:22:02 as along with 2 groups structural_bioinformatics Bioinformatics
	Conservation of electrostatic properties within enzyme families and superfamilies. [My Copy] Biochemistry, Vol. 42, No. 12. (1 April 2003), pp. 3464-3473. by D. R. Livesay, P. Jambeck, A. Rojnuckarin, S. Subramaniam posted to electrostatics protein_design protein_evolution protein_structure by barry on 2005-10-09 01:28:18 as along with 1 person and 2 groups Einat structural_bioinformatics Bioinformatics
	Automatic Analysis of Protein Conformational Changes by Multiple Linkage Clustering [My Copy] Journal of Molecular Biology, Vol. 253, No. 4. (3 November 1995), pp. 633-647. by Nathalie S. Boutonnet, Marianne J. Rooman, Shoshana J. Wodak posted to bioinf_methods protein_design protein_dynamics protein_structure by barry on 2005-09-28 01:16:22 as along with 2 groups structural_bioinformatics Bioinformatics

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protein_structure	278
molecular_motors	190
review	190
kinesin	145
protein_dynamics	132
md_simulation	93
protein_sequence	83
protein_protein	77
bioinf_methods	76
protein_evolution	69
protein_design	65
nma	50
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
allosteric	39
bd_simulation	38
myosin	37
electrostatics	34
dynein	29
pca	29
ctbp	27
drug_design	26
sequence_comparison	24
eg5	23
ras	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
domain_motions	18
monastrol	18
g_proteins	17
clustering	16
docking	16
bioinformatics	15
coarse_grain	15
core_structure	15
ntpases	14
correlated_motions	13
networks	13
protein_ligand	13
career	12
comparative_model	12
p-loop	12
contacts	11
core_residues	11
hbond	11
fold_space	10
free_energy	9
general	9
gotit	9
mts	9
aaa	8
mine	8
pdz	8
protein_fragments	8
protein_packing	8
sca	8
small_world	8
torsion_angles	8
transcription_factor	8
cargo_attachment	7
conformational_selection	7
dehydron	7
mitosis	7
nachr	7
r	7
cell_cycle_inhibitors	6
cryo_em	6
distance_matrices	6
drug_discovery	6
ion_channels	6
actin	5
binding	5
inhibitor_design	5
microarrays	5
mutants	5
phylogeny	5
replica_exchange	5
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myovi	4
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smd	4
accelerated_md	3
adh	3
alex	3
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coarse-grained	3
dynamic_similarity	3
function_prediction	3
genomic_context	3
gpcr	3
groel	3
guide	3
ion_pairs	3
itc	3
kif1a	3
kin13	3
kin14_kar3	3
membranes	3
myov	3
nadp	3
neck_linker	3
poster	3
protein_function	3
protein-ligand	3
protein-protein	3
residue_annotation	3
server	3
structure_refinement	3
svm	3
swi-swii	3
test	3
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achr	2
advice	2
amber	2
arf	2
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beta_sheet	2
brownian_dynamics	2
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disorder	2
dna_motor	2
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epr	2
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go_model	2
graph	2
helix_helix	2
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ikk	2
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journal_club	2
kin8	2
kini	2
ksca	2
malaria	2
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mm-pbsa	2
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nfkb	2
ntp	2
nucleotide_analogues	2
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em	1
epitopes	1
essay	1
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ftsz	1
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jc	1
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md	1
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nice_figure	1
pathways	1
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pcp	1
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perl	1
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programming	1
proline	1
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protein_engineering	1
protein_stability	1
protein_strcture	1
protonation	1
ptms	1
qm	1
qm_mm	1
rabkinesin	1
rafts	1
ran	1
residue_effect	1
rna	1
rna_dynamics	1
rna_polymerase	1
roc	1
sas	1
scop	1
sequence_conservation	1
sequencing	1
sheer_motion	1
siginal_transduction	1
similarity	1
single_molecule	1
smallrna	1
sos	1
species_evolution	1
structural_genomics	1
structure_alignment	1
superamolecular	1
systems_biology	1
torsion	1
transition_state	1
tyrosine_kinase	1
tyrosine_phosphatases	1
ubiqutin	1
umbrella	1
virulence_factors	1
virus	1
wavelets	1
wham	1
wireing_digrams	1

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