barry's protein_folding [19 articles] Export

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	Protein folding: lessons learned and new frontiers [My Copy] Phys. Biol., Vol. 6, No. 1. (March 2009), 010301. by Rohit V. Pappu, Ruth Nussinov posted to protein_folding by barry on 2009-03-25 21:57:22 as along with 3 people and 1 group VGreiff sobolevnrm viktor21614 baker-group
	Network and graph analyses of folding free energy surfaces [My Copy] Current Opinion in Structural Biology In Protein-nucleic acid interactions/Folding and binding - Wei Yang and Gregory D Van Dyne/Mikael Oliveberg and Eugene I Shakhnovich, Vol. 16, No. 1. (February 2006), pp. 71-78. by Amedeo Caflisch posted to networks protein_folding review by barry on 2009-02-09 19:38:29 as along with 5 people and 1 group apaydin bilab mtw jlh64 Diego_Prada structural_bioinformatics
	Principal component analysis for protein folding dynamics [My Copy] Journal of Molecular Biology (15 October 2008) by G. Maisuradze, A. Liwo, H. Scheraga posted to pca protein_folding by barry on 2008-10-30 04:05:03 as along with 4 people and 1 group Diego_Prada scampos phoenixzxl paulschlesinger structural_bioinformatics
	Supercharging Proteins Can Impart Unusual Resilience [My Copy] J. Am. Chem. Soc., Vol. 129, No. 33. (22 August 2007), pp. 10110-10112. by M. S. Lawrence, K. J. Phillips, D. R. Liu posted to electrostatics journal_club protein_design protein_evolution protein_folding by barry on 2007-10-26 22:37:58 as along with 2 people and 3 groups samjlord sobolevnrm structural_bioinformatics moernerlab baker-group
	Phylogeny of protein-folding trajectories reveals a unique pathway to native structure. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 51. (21 December 2004), pp. 17658-17663. by M. Ota, M. Ikeguchi, A. Kidera posted to clustering contacts md_simulation protein_folding protein_structure by barry on 2007-08-10 18:38:42 as along with 2 groups structural_bioinformatics Bioinformatics
	Unfolding Pathways of Goat [alpha]-Lactalbumin as Revealed in Multiple Alignment of Molecular Dynamics Trajectories [My Copy] Journal of Molecular Biology, Vol. 371, No. 5. (31 August 2007), pp. 1354-1364. by Tomotaka Oroguchi, Mitsunori Ikeguchi, Motonori Ota, Kunihiro Kuwajima, Akinori Kidera posted to clustering contacts md_simulation protein_folding protein_structure by barry on 2007-08-10 18:36:13 as along with 1 person and 2 groups choonpeng structural_bioinformatics Bioinformatics
	Principles that Determine the Structure of Proteins [My Copy] Annual Review of Biochemistry, Vol. 53, No. 1. (1984), pp. 537-572. by C. Chothia posted to protein_design protein_folding protein_structure by barry on 2006-09-29 19:25:47 as along with 3 people and 2 groups carlosjavierna ana nigham structural_bioinformatics Bioinformatics
	Early Protein Evolution: Building Domains from Ligand-binding Polypeptide Segments [My Copy] Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 460-468. by Lutz Riechmann, Greg Winter posted to protein_evolution protein_folding protein_fragments by barry on 2006-09-29 19:10:15 as along with 2 people and 2 groups jwm cjeans structural_bioinformatics Bioinformatics
	Clustering of low-energy conformations near the native structures of small proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 19. (15 September 1998), pp. 11158-11162. by D. Shortle, K. T. Simons, D. Baker posted to protein_design protein_dynamics protein_folding protein_sequence protein_structure by barry on 2006-03-22 20:15:18 as along with 3 people and 5 groups thaliana dgront joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Geometry and symmetry presculpt the free-energy landscape of proteins [My Copy] PNAS, Vol. 101, No. 21. (25 May 2004), pp. 7960-7964. by Trinh X. Hoang, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, Amos Maritan posted to protein_design protein_folding protein_structure by barry on 2006-03-08 23:10:47 as along with 3 people and 2 groups ana mtw naitsabes structural_bioinformatics Bioinformatics
	Topological Determinants of Protein Domain Swapping [My Copy] Structure, Vol. 14, No. 1. (January 2006), pp. 5-14. by Feng Ding, Kirk C. Prutzman, Sharon L. Campbell, Nikolay V. Dokholyan posted to contacts core_structure domain_motions domain_swapping networks protein_dynamics protein_folding protein_structure by barry on 2006-01-16 20:12:22 as along with 2 groups structural_bioinformatics Bioinformatics
	Statistical potentials for fold assessment. [My Copy] Protein Sci, Vol. 11, No. 2. (February 2002), pp. 430-448. by F. Melo, R. Sánchez, A. Sali posted to comparative_model protein_folding protein_structure by barry on 2005-11-11 20:31:44 as along with 6 people and 2 groups rabio krapnik mijam mcbla eckart_bindewald dgront structural_bioinformatics Bioinformatics
	Analysis methods for comparison of multiple molecular dynamics trajectories: applications to protein unfolding pathways and denatured ensembles. [My Copy] J Mol Biol, Vol. 290, No. 1. (2 July 1999), pp. 283-304. by S. L. Kazmirski, A. Li, V. Daggett posted to md_simulation protein_folding by barry on 2005-10-26 00:12:22 as along with 2 people and 2 groups lillekatt choonpeng structural_bioinformatics Bioinformatics
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted to contacts core_residues protein_design protein_dynamics protein_evolution protein_folding by barry on 2005-10-12 23:58:56 as along with 4 people and 4 groups dfdong ana Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Identifying importance of amino acids for protein folding from crystal structures. [My Copy] Methods Enzymol, Vol. 374 (2003), pp. 616-638. by N. V. Dokholyan, J. M. Borreguero, S. V. Buldyrev, F. Ding, H. E. Stanley, E. I. Shakhnovich posted to protein_folding protein_structure review by barry on 2005-09-28 00:58:34 as along with 2 groups structural_bioinformatics Bioinformatics
	Small-world view of the amino acids that play a key role in protein folding. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002) by M. Vendruscolo, N. V. Dokholyan, E. Paci, M. Karplus posted to protein_design protein_folding small_world by barry on 2005-09-27 23:23:45 as along with 3 people and 8 groups ana shantanu choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Mutational Analysis Demonstrates that Specific Electrostatic Interactions can Play a Key Role in the Denatured State Ensemble of Proteins [My Copy] Journal of Molecular Biology, Vol. 353, No. 1. (14 October 2005), pp. 174-185. by Jae-Hyun Cho, Daniel P. Raleigh posted to electrostatics protein_folding by barry on 2005-09-24 00:37:36 as along with 2 groups structural_bioinformatics Bioinformatics
	Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model. [My Copy] J Mol Biol, Vol. 313, No. 1. (12 October 2001), pp. 171-180. by N. Koga, S. Takada posted to go_model protein_folding by barry on 2005-09-19 21:58:26 as along with 2 people and 2 groups aalibes nigham structural_bioinformatics Bioinformatics
	How does a protein fold? [My Copy] Nature, Vol. 369, No. 6477. (19 May 1994), pp. 248-251. by A. Sali, E. Shakhnovich, M. Karplus posted to fold_space protein_evolution protein_folding protein_sequence protein_structure structural_bioinformatics by barry on 2005-03-16 03:16:39 as along with 3 people and 2 groups mijam ucbcjbm evaf structural_bioinformatics Bioinformatics

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protein_structure	279
review	194
molecular_motors	191
kinesin	145
protein_dynamics	132
md_simulation	95
protein_sequence	83
bioinf_methods	77
protein_protein	77
protein_evolution	69
protein_design	66
nma	51
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
allosteric	39
bd_simulation	39
myosin	37
electrostatics	34
pca	31
dynein	29
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ctbp	27
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ras	23
eg5	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
monastrol	18
domain_motions	18
docking	17
clustering	17
g_proteins	17
coarse_grain	17
core_structure	15
bioinformatics	15
ntpases	14
correlated_motions	14
career	13
networks	13
protein_ligand	13
contacts	12
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p-loop	12
hbond	11
core_residues	11
fold_space	10
free_energy	9
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mts	9
general	9
gotit	9
aaa	9
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pdz	8
protein_packing	8
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small_world	8
protein_fragments	8
mine	8
mitosis	7
r	7
dehydron	7
nachr	7
cargo_attachment	7
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cell_cycle_inhibitors	6
ion_channels	6
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actin	6
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binding	5
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adh	3
membranes	3
poster	3
protein-ligand	3
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server	3
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protein-protein	3
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kin14_kar3	3
protein_function	3
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coarse-grained	3
kin13	3
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rna_polymerase	2
protein_dna	2
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go_model	2
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em	1
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essay	1
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rafts	1
smallrna	1
chromokinesin	1
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barry's protein_folding [19 articles] Export

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