barry's sequence_comparison [24 articles] Export

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	A Simple Statistical Method for Estimating Type-II (Cluster-Specific) Functional Divergence of Protein Sequences [My Copy] Mol Biol Evol, Vol. 23, No. 10. (1 October 2006), pp. 1937-1945. by Xun Gu posted to bioinf_methods protein_sequence sequence_comparison by barry on 2008-11-24 18:43:41 as along with 2 people gjuggler ramiro2k
	Evolutionary and functional divergence between the cystic fibrosis transmembrane conductance regulator and related ATP-binding cassette transporters. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (19 November 2008) by I King K. Jordan, Karthik C C. Kota, Guiying Cui, Christopher H H. Thompson, Nael A A. McCarty posted to abc cftr protein_evolution sequence_comparison by barry on 2008-11-24 18:25:20 as along with 1 group McCammon
	Predicting Allosteric Communication in Myosin via a Pathway ofConserved Residues [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Susan Tang, Jung-Chi Liao, Alexander R. Dunn, Russ B. Altman, James A. Spudich, Jeanette P. Schmidt posted to allosteric molecular_motors myosin protein_sequence protein_structure sequence_comparison by barry on 2007-10-31 21:53:37 as along with 5 people and 2 groups choonpeng cactus sobolevnrm jlh64 melting structural_bioinformatics baker-group
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8. by Nan Li, Martin Tompa posted to review sequence_comparison sequence_motif transcription_factor by barry on 2007-08-28 02:13:10 as along with 11 people and 2 groups wowalz yevishere ana tuck chad_davis dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
	Profile-based string kernels for remote homology detection and motif extraction. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 3. (June 2005), pp. 527-550. by R. Kuang, E. Ie, K. Wang, et al.K. Wang, M. Siddiqi, Y. Freund, C. Leslie posted to protein_sequence sequence_comparison svm by barry on 2007-08-28 02:06:16 as along with 3 people and 2 groups ana chrn craigtalbert structural_bioinformatics Bioinformatics
	How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins [My Copy] Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230. by Arthur M. Lesk, Cyrus Chothia posted to core_residues core_structure protein_design protein_evolution protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-09-29 19:18:54 as along with 2 people and 4 groups ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-09-29 19:17:05 as along with 4 people and 2 groups j3xucite ana analogAI granujilla structural_bioinformatics Bioinformatics
	Optimal classification of protein sequences and selection of representative sets from multiple alignments: application to homologous families and lessons for structural genomics. [My Copy] Protein Eng, Vol. 14, No. 4. (April 2001), pp. 209-217. by A. C. May posted to bioinf_methods protein_sequence sequence_comparison by barry on 2006-05-04 17:16:42 as along with 2 groups structural_bioinformatics Bioinformatics
	Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3360-3368. by J. Espadaler, O. Romero-Isart, R. M. Jackson, B. Oliva posted to protein_protein protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-03-06 22:20:06 as along with 2 people and 2 groups bicko baldo structural_bioinformatics Bioinformatics
	Detection and reduction of evolutionary noise in correlated mutation analysis [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253. by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz posted to correlated_mutations sequence_comparison by barry on 2006-01-25 04:24:16 as along with 3 people and 2 groups orr gbart cjeans structural_bioinformatics Bioinformatics
	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted to contacts correlated_motions correlated_mutations pdz sequence_comparison by barry on 2006-01-25 04:17:37 as along with 8 people and 2 groups dfdong ana gbart cjeans tale friendpine ca3295 Lombardo_7 structural_bioinformatics Bioinformatics
	A tutorial of recent developments in the seeding of local alignment. [My Copy] J Bioinform Comput Biol, Vol. 2, No. 4. (December 2004), pp. 819-842. by D. G. Brown, M. Li, B. Ma posted to bioinf_methods protein_sequence sequence_comparison by barry on 2006-01-25 03:04:09 as along with 1 person and 2 groups nedwards structural_bioinformatics Bioinformatics
	Analysis and prediction of functional sub-types from protein sequence alignments [My Copy] Journal of Molecular Biology, Vol. 303, No. 1. (13 October 2000), pp. 61-76. by Sridhar S. Hannenhalli, Robert B. Russell posted to protein_sequence sequence_comparison by barry on 2005-12-13 13:27:13 as along with 1 person and 2 groups marti structural_bioinformatics Bioinformatics
	PISCES: a protein sequence culling server. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1589-1591. by Guoli Wang, Roland L. Dunbrack posted to bioinf_methods protein_sequence sequence_comparison by barry on 2005-09-19 21:59:58 as along with 10 people and 2 groups TLVincent reyez aalibes kaarsinogen j3xucite dgront blackbart mloewer ezralanglois chgjb structural_bioinformatics Bioinformatics
	A method to predict functional residues in proteins. [My Copy] Nat Struct Biol, Vol. 2, No. 2. (February 1995), pp. 171-178. by G. Casari, C. Sander, A. Valencia posted to bioinf_methods correlated_mutations protein_design protein_sequence sequence_comparison by barry on 2005-09-16 23:37:03 as along with 2 people and 2 groups ramiro2k sriram_s structural_bioinformatics Bioinformatics
	In silico Discovery of Enzyme-Substrate Specificity-determining Residue Clusters [My Copy] Journal of Molecular Biology, Vol. 352, No. 5. (7 October 2005), pp. 1105-1117. by Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist, Nagiza F. Samatova posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence sequence_comparison by barry on 2005-09-15 18:06:44 as along with 1 person and 2 groups cjeans structural_bioinformatics Bioinformatics
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to core_structure fold_space protein_evolution protein_sequence protein_structure review sequence_comparison structure_comparison by barry on 2005-09-13 19:39:01 as along with 19 people and 6 groups dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Correlations Among Amino Acid Sites in bHLH Protein Domains: An Information Theoretic Analysis [My Copy] Mol Biol Evol, Vol. 17, No. 1. (1 January 2000), pp. 164-178. by William R. Atchley, Kurt R. Wollenberg, Walter M. Fitch, Werner Terhalle, Andreas W. Dress posted to bioinf_methods protein_evolution protein_sequence sequence_comparison by barry on 2005-08-01 22:49:52 as along with 2 people and 2 groups mgomes friendpine structural_bioinformatics Bioinformatics
	Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 7. (28 March 2000), pp. 3288-3291. by K. R. Wollenberg, W. R. Atchley posted to bioinf_methods protein_evolution protein_sequence sequence_comparison by barry on 2005-08-01 22:45:50 as along with 2 people and 2 groups druvus friendpine structural_bioinformatics Bioinformatics
	Identification of functionally conserved residues with the use of entropy-variability plots. [My Copy] Proteins, Vol. 52, No. 4. (1 September 2003), pp. 544-552. by L. Oliveira, P. B. Paiva, A. C. Paiva, G. Vriend posted to bioinformatics protein_design protein_sequence sequence_comparison by barry on 2005-08-01 22:41:32 as along with 2 groups structural_bioinformatics Bioinformatics
	Solving the protein sequence metric problem [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 18. (3 May 2005), pp. 6395-6400. by William R. Atchley, Jieping Zhao, Andrew D. Fernandes, Tanja DrÃ¼ke posted to protein_sequence sequence_comparison structure_comparison by barry on 2005-05-12 18:43:32 as along with 2 people and 2 groups ana friendpine structural_bioinformatics Bioinformatics
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces [My Copy] Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by Buyong Ma, Tal Elkayam, Haim Wolfson, Ruth Nussinov posted to gotit protein_protein sequence_comparison structural_bioinformatics by barry on 2005-04-14 20:08:28 as along with 2 groups structural_bioinformatics Bioinformatics
	Sequence variations within protein families are linearly related to structural variations. [My Copy] J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 551-562. by P. Koehl, M. Levitt posted to bioinformatics protein_evolution protein_sequence protein_structure sequence_comparison structural_bioinformatics by barry on 2005-03-10 02:22:29 as along with 4 people and 2 groups dfdong ana okarsligil insectopalo structural_bioinformatics Bioinformatics
	Improving the quality of twilight-zone alignments. [My Copy] Protein Sci, Vol. 9, No. 8. (August 2000), pp. 1487-1496. by L. Jaroszewski, L. Rychlewski, A. Godzik posted to bioinf_methods bioinformatics protein_sequence sequence_comparison by barry on 2005-03-06 02:05:38 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics

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protein_structure	278
molecular_motors	190
review	190
kinesin	145
protein_dynamics	132
md_simulation	93
protein_sequence	83
protein_protein	77
bioinf_methods	76
protein_evolution	69
protein_design	65
nma	50
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
allosteric	39
bd_simulation	38
myosin	37
electrostatics	34
dynein	29
pca	29
ctbp	27
drug_design	26
sequence_comparison	24
eg5	23
ras	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
domain_motions	18
monastrol	18
g_proteins	17
clustering	16
docking	16
bioinformatics	15
coarse_grain	15
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ntpases	14
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networks	13
protein_ligand	13
career	12
comparative_model	12
p-loop	12
contacts	11
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hbond	11
fold_space	10
free_energy	9
general	9
gotit	9
mts	9
aaa	8
mine	8
pdz	8
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sca	8
small_world	8
torsion_angles	8
transcription_factor	8
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conformational_selection	7
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mitosis	7
nachr	7
r	7
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ion_channels	6
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hsp90	4
myovi	4
ncd	4
ribosome	4
smd	4
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alex	3
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ion_pairs	3
itc	3
kif1a	3
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myov	3
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neck_linker	3
poster	3
protein_function	3
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server	3
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swi-swii	3
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jc	1
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motor_cargo	1
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nad	1
nadh	1
nemo	1
nice_figure	1
pathways	1
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pdb	1
perl	1
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protein_annotation	1
protein_engineering	1
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qm	1
qm_mm	1
rabkinesin	1
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ran	1
residue_effect	1
rna	1
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roc	1
sas	1
scop	1
sequence_conservation	1
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sheer_motion	1
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similarity	1
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ubiqutin	1
umbrella	1
virulence_factors	1
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wavelets	1
wham	1
wireing_digrams	1

barry's sequence_comparison [24 articles] Export

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