barry's structure_comparison [46 articles] Export

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	Advances and pitfalls of protein structural alignment. [My Copy] Current opinion in structural biology, Vol. 19, No. 3. (27 June 2009), pp. 341-348. by Hitomi Hasegawa, Liisa Holm posted to review structural_bioinformatics structure_comparison by barry on 2009-06-08 04:25:56 as along with 4 people and 3 groups sebk davidalee dgront sobolevnrm OPIG Orengo Group Journal Picks structural_bioinformatics
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted to protein_evolution protein_structure structure_comparison by barry on 2009-05-12 03:32:02 as along with 13 people and 3 groups dfdong mkotlyar skywalkerus02 dgront nyyu robfsouza apaydin coela Zephyrus sobolevnrm zwang friendpine paulschlesinger structural_bioinformatics R.E.A.D baker-group
	Large-scale structural analysis of the classical human protein tyrosine phosphatome. [My Copy] Cell, Vol. 136, No. 2. (23 January 2009), pp. 352-363. by A. J. Barr, E. Ugochukwu, W. H. Lee, et al.O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Müller, S. Knapp posted to electrostatics protein_structure structure_comparison tyrosine_phosphatases by barry on 2009-03-30 18:41:30 as along with 2 people and 1 group absterga renatomilani structural_bioinformatics
	Protein Functional Surfaces: Global Shape Matching and Local Spatial Alignments of Ligand Binding Sites [My Copy] BMC Structural Biology, Vol. 8 (27 October 2008), 45. by Andrew T. Binkowski, Andrzej Joachimiak posted to protein_ligand structure_comparison by barry on 2009-03-25 22:12:19 as along with 2 people and 3 groups GeeSharpMinor sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Structural Alphabets for Protein Structure Classification: A Comparison Study [My Copy] Journal of Molecular Biology (25 December 2008) by Q. Le, G. Pollastri, P. Koehl posted to protein_fragments protein_structure structure_comparison by barry on 2009-03-12 18:15:21 as along with 4 people and 2 groups zwang svozil idoerg reyez structural_bioinformatics Bioinformatics
	Comparative Analysis of Protein Structure Alignments [My Copy] BMC Structural Biology, Vol. 7 (26 July 2007), 50. by Gabriele Mayr, Francisco S. Domingues, Peter Lackner posted to protein_structure review structure_comparison by barry on 2007-12-04 22:41:13 as along with 1 person and 1 group bicko structural_bioinformatics
	Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2256-2268. by Krissinel, E., Henrick, K. posted to bioinf_methods graph protein_structure structure_comparison by barry on 2007-07-13 19:39:15 as along with 3 people and 4 groups jwm analogAI robert structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	SISYPHUS--structural alignments for proteins with non-trivial relationships. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by A. Andreeva, A. Prlić, T. J. Hubbard, A. G. Murzin posted to protein_fragments protein_structure structure_comparison by barry on 2007-05-30 19:09:40 as along with 5 people and 2 groups timhubbard ana dgront massivemayhem martainn structural_bioinformatics Bioinformatics
	Less is more: towards an optimal universal description of protein folds. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by J. D. Szustakowski, S. Kasif, Z. Weng posted to structure_comparison protein_structure protein_fragments protein_design bioinf_methods by barry on 2007-02-07 21:30:06 as along with 3 people and 2 groups ana msierk krishnaJCSG structural_bioinformatics Bioinformatics
	Bio3d: an R package for the comparative analysis of protein structures. [My Copy] Bioinformatics (29 August 2006) by Barry J J. Grant, Ana P C P. Rodrigues, Karim M M. Elsawy, J Andrew A. McCammon, Leo S D S. Caves posted to kinesin mine protein_dynamics protein_sequence protein_structure r structural_bioinformatics structure_comparison by barry on 2007-01-05 01:03:37 as along with 9 people and 2 groups dfdong dswan gisle ana Einat plofje krishnaJCSG insectopalo cdeane structural_bioinformatics Bioinformatics
	Mechanisms of domain closure in proteins. [My Copy] J Mol Biol, Vol. 174, No. 1. (25 March 1984), pp. 175-191. by A. M. Lesk, C. Chothia posted to citrate_synthase ctbp hinge_motion protein_dynamics protein_structure sheer_motion structure_comparison torsion_angles by barry on 2006-09-29 19:31:06 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Experimental assessment of differences between related protein crystal structures. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 55, No. 11. (November 1999), pp. 1878-1884. by G. J. Kleywegt posted to protein_structure structure_comparison structure_determination by barry on 2006-09-29 19:23:13 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Significance of structural changes in proteins: expected errors in refined protein structures. [My Copy] Protein Sci, Vol. 4, No. 11. (November 1995), pp. 2392-2404. by R. M. Stroud, E. B. Fauman posted to protein_sequence structure_comparison by barry on 2006-09-29 19:21:38 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Experimental assessment of differences between related protein crystal structures [My Copy] Acta Crystallographica. Section D, Biological Crystallography, Vol. 55, No. 11. (November 1999), pp. 1878-1884. by G. J. Kleywegt posted to protein_structure structure_comparison structure_determination by barry on 2006-09-29 19:20:46 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins [My Copy] Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230. by Arthur M. Lesk, Cyrus Chothia posted to core_residues core_structure protein_design protein_evolution protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-09-29 19:18:54 as along with 2 people and 4 groups ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-09-29 19:17:05 as along with 4 people and 2 groups j3xucite ana analogAI granujilla structural_bioinformatics Bioinformatics
	Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3360-3368. by J. Espadaler, O. Romero-Isart, R. M. Jackson, B. Oliva posted to protein_protein protein_sequence protein_structure sequence_comparison structure_comparison by barry on 2006-03-06 22:20:06 as along with 2 people and 2 groups bicko baldo structural_bioinformatics Bioinformatics
	HCPM--program for hierarchical clustering of protein models. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3179-3180. by D. Gront, A. Kolinski posted to bioinf_methods protein_structure structure_comparison by barry on 2006-03-06 22:17:59 as along with 2 people and 2 groups dgront rabio structural_bioinformatics Bioinformatics
	FSSA: a novel method for identifying functional signatures from structural alignments. [My Copy] Bioinformatics (28 April 2005) by Kai Wang, Ram Samudrala posted to bioinf_methods protein_structure structural_bioinformatics structure_comparison by barry on 2006-03-06 22:05:43 as along with 2 people and 2 groups ana Einat structural_bioinformatics Bioinformatics
	Automatic 3D Protein Structure Classification without Structural Alignment [My Copy] Journal of Computational Biology, Vol. 12, No. 9. (2005), pp. 1221-1241. by Zeyar Aung, Kian-Lee Tan posted to protein_structure structural_bioinformatics structure_comparison by barry on 2006-01-27 18:36:40 as along with 2 people and 8 groups ana shantanu structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Pairwise protein structure alignment based on an orientation-independent backbone representation. [My Copy] J Bioinform Comput Biol, Vol. 2, No. 4. (December 2004), pp. 699-717. by J. Ye, R. Janardan, S. Liu posted to bioinf_methods protein_structure structural_bioinformatics structure_comparison by barry on 2006-01-25 03:30:29 as along with 2 groups structural_bioinformatics Bioinformatics
	Comparative molecular dynamics--similar folds and similar motions? [My Copy] Proteins, Vol. 61, No. 4. (1 December 2005), pp. 809-822. by Andrew Pang, Yalini Arinaminpathy, Mark S. Sansom, Philip C. Biggin posted to md_simulation structural_bioinformatics structure_comparison by barry on 2005-11-29 23:22:16 as along with 2 groups structural_bioinformatics Bioinformatics
	Characterizing Conserved Structural Contacts by Pair-wise Relative Contacts and Relative Packing Groups [My Copy] Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 706-721. by Bradley J. Holmes, Jerry Tsai posted to bioinf_methods contacts networks protein_design protein_structure structural_bioinformatics structure_comparison by barry on 2005-11-18 18:50:02 as along with 2 people and 2 groups ana Einat structural_bioinformatics Bioinformatics
	Assessing local structural perturbations in proteins. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (13 September 2005) by Martin A. Lema, Julian Echave posted to protein_dynamics protein_evolution protein_structure structure_comparison by barry on 2005-10-13 00:00:20 as along with 3 people and 2 groups ana pansapiens Einat structural_bioinformatics Bioinformatics
	Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility. [My Copy] J Mol Biol, Vol. 244, No. 3. (2 December 1994), pp. 332-350. by R. B. Russell, G. J. Barton posted to protein_evolution protein_structure structure_comparison by barry on 2005-10-08 01:09:11 as along with 2 people and 2 groups ana chad_davis structural_bioinformatics Bioinformatics
	Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding. [My Copy] Protein Sci, Vol. 3, No. 5. (May 1994), pp. 769-778. by D. Fischer, H. Wolfson, S. L. Lin, R. Nussinov posted to bioinf_methods protein_design protein_evolution protein_structure structural_bioinformatics structure_comparison by barry on 2005-09-19 22:03:37 as along with 4 people and 2 groups aalibes shadowman tjimenez chrys structural_bioinformatics Bioinformatics
	Fragnostic: walking through protein structure space. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by I. Friedberg, A. Godzik posted to fold_space protein_structure structural_bioinformatics structure_comparison by barry on 2005-09-19 21:56:22 as along with 7 people and 4 groups ana pansapiens aalibes Einat marcius alexg eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to core_structure fold_space protein_evolution protein_sequence protein_structure review sequence_comparison structure_comparison by barry on 2005-09-13 19:39:01 as along with 19 people and 6 groups dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Small Libraries of Protein Fragments Model Native Protein Structures Accurately [My Copy] Journal of Molecular Biology, Vol. 323, No. 2. (18 October 2002), pp. 297-307. by Rachel Kolodny, Patrice Koehl, Leonidas Guibas, Michael Levitt posted to comparative_model protein_design protein_evolution protein_structure structural_bioinformatics structure_comparison by barry on 2005-09-07 17:59:27 as along with 2 groups structural_bioinformatics Bioinformatics
	A surface of minimum area metric for the structural comparison of proteins. [My Copy] J Mol Biol, Vol. 258, No. 5. (24 May 1996), pp. 871-892. by A. Falicov, F. E. Cohen posted to bioinf_methods protein_structure structure_comparison by barry on 2005-06-28 00:34:52 as along with 2 people and 2 groups ana baaden structural_bioinformatics Bioinformatics
	Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1002-1009. by Sandelin Erik posted to structure_comparison by barry on 2005-06-19 22:24:23 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Finding an average core structure: application to the globins. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 2 (1994), pp. 19-27. by R. B. Altman, M. Gerstein posted to core_residues core_structure protein_structure structural_bioinformatics structure_comparison by barry on 2005-06-08 18:45:13 as along with 2 groups structural_bioinformatics Bioinformatics
	Average core structures and variability measures for protein families: application to the immunoglobulins. [My Copy] J Mol Biol, Vol. 251, No. 1. (4 August 1995), pp. 161-175. by M. Gerstein, R. B. Altman posted to core_residues core_structure protein_structure structure_comparison by barry on 2005-06-08 01:04:23 as along with 2 groups structural_bioinformatics Bioinformatics
	Automatic classification of protein structure by using Gauss integrals. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 1. (7 January 2003), pp. 119-124. by P. Rogen, B. Fain posted to protein_structure structural_bioinformatics structure_comparison by barry on 2005-06-05 20:10:26 as along with 3 people and 2 groups ana dimka tny structural_bioinformatics Bioinformatics
	Approximate protein structural alignment in polynomial time. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12201-12206. by R. Kolodny, N. Linial posted to structural_bioinformatics structure_comparison by barry on 2005-05-31 20:50:35 as along with 1 person and 2 groups vavi structural_bioinformatics Bioinformatics
	Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles [My Copy] Proteins: Structure, Function, and Genetics, Vol. 59, No. 4. (8 April 2005), pp. 673-686. by David A. Snyder, Gaetano T. Montelione posted to core_residues protein_dynamics structure_comparison by barry on 2005-05-25 19:10:07 as along with 3 people and 2 groups karbak ana dgront structural_bioinformatics Bioinformatics
	Regression analysis of multiple protein structures. [My Copy] J Comput Biol, Vol. 5, No. 3. (1998), pp. 585-595. by T. D. Wu, S. C. Schmidler, T. Hastie, D. L. Brutlag posted to bioinf_methods protein_structure structure_comparison by barry on 2005-05-25 18:56:55 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted to comparative_model pca protein_design protein_dynamics protein_evolution protein_structure structure_comparison by barry on 2005-05-25 18:50:26 as along with 5 people and 4 groups aqeel ana lna marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Optimum superimposition of protein structures: ambiguities and implications. [My Copy] Fold Des, Vol. 1, No. 2. (1996), pp. 123-132. by Z. K. Feng, M. J. Sippl posted to protein_structure structure_comparison by barry on 2005-05-20 01:08:23 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Alternative alignments from comparison of protein structures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 3. (2 April 2004), pp. 519-527. by Edward S. Shih, Ming-Jing Hwang posted to protein_structure structure_comparison by barry on 2005-05-20 00:13:42 as along with 4 people and 4 groups ana Einat eweaver dchughes structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling
	Evolution of protein structures and functions [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (01 June 2002), pp. 400-408. by Lisa N. Kinch, Nick V. Grishin posted to protein_evolution protein_structure structure_comparison by barry on 2005-05-20 00:04:23 as along with 2 people and 2 groups dfdong ana structural_bioinformatics Bioinformatics
	Structure alignment via Delaunay tetrahedralization. [My Copy] Proteins (26 April 2005) by Jeffrey Roach, Shantanu Sharma, Maryna Kapustina, Charles W W. Carter posted to protein_structure structure_comparison by barry on 2005-05-19 23:40:48 as along with 3 people and 9 groups BragilMassoud ana shantanu MuraLab structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Fold change in evolution of protein structures. [My Copy] J Struct Biol, Vol. 134, No. 2-3. (n 2001), pp. 167-185. by N. V. Grishin posted to fold_space protein_evolution protein_structure structure_comparison by barry on 2005-05-12 18:48:47 as along with 7 people and 2 groups robfsouza tomhebbron matzke ana pansapiens krishnaJCSG martainn structural_bioinformatics Bioinformatics
	An analysis of core deformations in protein superfamilies. [My Copy] Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted to nma protein_structure structural_bioinformatics structure_comparison by barry on 2005-05-12 18:45:49 as along with 7 people and 2 groups apaydin ana lna dimka aqeel insectopalo edvin structural_bioinformatics Bioinformatics
	Solving the protein sequence metric problem [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 18. (3 May 2005), pp. 6395-6400. by William R. Atchley, Jieping Zhao, Andrew D. Fernandes, Tanja DrÃ¼ke posted to protein_sequence sequence_comparison structure_comparison by barry on 2005-05-12 18:43:32 as along with 2 people and 2 groups ana friendpine structural_bioinformatics Bioinformatics
	Geometric Hashing: An Overview [My Copy] IEEE Computational Science and Engineering, Vol. 4 (1997), pp. 10-21. by H. Wolfson, I. Rigoutsos posted to bioinf_methods protein_structure structural_bioinformatics structure_comparison by barry on 2005-04-28 21:53:27 as along with 1 person and 5 groups joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics

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protein_structure	278
molecular_motors	190
review	190
kinesin	145
protein_dynamics	132
md_simulation	93
protein_sequence	83
protein_protein	77
bioinf_methods	76
protein_evolution	69
protein_design	65
nma	50
structure_comparison	46
structural_bioinformatics	45
cytoskeleton	44
tubulin	42
allosteric	39
bd_simulation	38
myosin	37
electrostatics	34
dynein	29
pca	29
ctbp	27
drug_design	26
sequence_comparison	24
eg5	23
ras	23
correlated_mutations	22
nmr	21
motor_model	20
kinases	19
protein_folding	19
domain_motions	18
monastrol	18
g_proteins	17
clustering	16
docking	16
bioinformatics	15
coarse_grain	15
core_structure	15
ntpases	14
correlated_motions	13
networks	13
protein_ligand	13
career	12
comparative_model	12
p-loop	12
contacts	11
core_residues	11
hbond	11
fold_space	10
free_energy	9
general	9
gotit	9
mts	9
aaa	8
mine	8
pdz	8
protein_fragments	8
protein_packing	8
sca	8
small_world	8
torsion_angles	8
transcription_factor	8
cargo_attachment	7
conformational_selection	7
dehydron	7
mitosis	7
nachr	7
r	7
cell_cycle_inhibitors	6
cryo_em	6
distance_matrices	6
drug_discovery	6
ion_channels	6
actin	5
binding	5
inhibitor_design	5
microarrays	5
mutants	5
phylogeny	5
replica_exchange	5
adk	4
allostery	4
cancer	4
hsp90	4
myovi	4
ncd	4
ribosome	4
smd	4
accelerated_md	3
adh	3
alex	3
cath	3
chagas	3
coarse-grained	3
dynamic_similarity	3
function_prediction	3
genomic_context	3
gpcr	3
groel	3
guide	3
ion_pairs	3
itc	3
kif1a	3
kin13	3
kin14_kar3	3
membranes	3
myov	3
nadp	3
neck_linker	3
poster	3
protein_function	3
protein-ligand	3
protein-protein	3
residue_annotation	3
server	3
structure_refinement	3
svm	3
swi-swii	3
test	3
tropical_diseases	3
achr	2
advice	2
amber	2
arf	2
bayesian_classifiers	2
beta_sheet	2
brownian_dynamics	2
clipx	2
coiled_coil	2
disorder	2
dna_motor	2
documentation	2
epr	2
fret-fiona	2
go_model	2
graph	2
helix_helix	2
hinge_motion	2
ikk	2
interaction_maps	2
journal_club	2
kin8	2
kini	2
ksca	2
malaria	2
membrane_proteins	2
mm-pbsa	2
motor_mode	2
neural_net	2
nfkb	2
ntp	2
nucleotide_analogues	2
pka	2
pmf	2
protein_dna	2
pxdls	2
rab	2
rho	2
sampling	2
sequence_motif	2
solvation	2
solvent	2
structure_determination	2
student	2
subfamily	2
time_series_analysis	2
titration	2
aaindex	1
abc	1
afm	1
afp	1
alanine_scanning	1
alpha_actinin	1
alzheimers	1
antibodys	1
antiviral_drugs	1
arp3	1
bacteriorhodopsin	1
book2get	1
bpti	1
catalytic_mechanism	1
cftr	1
chip-chip	1
chromokinesin	1
cis_trans	1
citrate_synthase	1
cloud_computing	1
coevolution	1
comparative_genomics	1
complexity	1
conformational_search	1
convergent_evolution	1
cracking	1
crystal_packing	1
decision_trees	1
diffusion	1
directed_evolution	1
discussion_free_energy	1
docking_refinement	1
domain_swapping	1
doublecortin	1
ef-g	1
ef-tu	1
em	1
epitopes	1
essay	1
f1atpase	1
fad	1
farnesyltransferase	1
fdh	1
ff99sb	1
flagella	1
flagellar_motor	1
flu	1
fold	1
for_ana	1
force_field	1
fret	1
ftsz	1
funding	1
gaba	1
gdh	1
gene_duplication	1
gene_expression	1
gene_finding	1
gene_ontology	1
genome	1
gfp	1
gpus	1
helicases	1
hiv	1
hiv_integrase	1
hiv_rt	1
hoh	1
hot_spots	1
hsp104	1
hsp70	1
hydrodynamics	1
hydrophobic	1
immunology	1
imp_dehydrogenase	1
ion_channel	1
jc	1
kar3	1
kinesin_neck	1
kinesin_tail	1
kinetics	1
kinetochores	1
kin_loop5	1
kin-mtl	1
landscapes	1
ldh	1
literature	1
loop_modeling	1
mcak	1
md	1
mdh	1
membrane	1
metadynamics	1
mg	1
mmp	1
molecular_moters	1
motor_cargo	1
multiscale	1
nad	1
nadh	1
nemo	1
nice_figure	1
pathways	1
pcna	1
pcp	1
pdb	1
perl	1
pgdh	1
phosphorylation	1
power_law	1
programming	1
proline	1
promoter_finding	1
promoter_identification	1
protein_annotation	1
protein_engineering	1
protein_stability	1
protein_strcture	1
protonation	1
ptms	1
qm	1
qm_mm	1
rabkinesin	1
rafts	1
ran	1
residue_effect	1
rna	1
rna_dynamics	1
rna_polymerase	1
roc	1
sas	1
scop	1
sequence_conservation	1
sequencing	1
sheer_motion	1
siginal_transduction	1
similarity	1
single_molecule	1
smallrna	1
sos	1
species_evolution	1
structural_genomics	1
structure_alignment	1
superamolecular	1
systems_biology	1
torsion	1
transition_state	1
tyrosine_kinase	1
tyrosine_phosphatases	1
ubiqutin	1
umbrella	1
virulence_factors	1
virus	1
wavelets	1
wham	1
wireing_digrams	1

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