bdessailly's library 26 articles Export

	Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R124. by Ana Marques, Chris Ponting posted to transcript_catalogues sequence_conservation noncoding_transcriptome ncrna mouse macrorna long_intergenic_noncoding_rna lincrna 13-nov-09 by bdessailly on 2009-11-13 10:19:34 as along with 6 people and 2 groups burak hrogers yogita daforerog reyez gdb Orengo Group Journal Picks Journal picks
	Divergence of exonic splicing elements after gene duplication and the impact on gene structures [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R120. by Zhenguo Zhang, Li Zhou, Ping Wang, et al.Yang Liu, Xianfeng Chen, Landian Hu, Xiangyin Kong posted to gene_duplication functional_novelty exonic_splicing_silencers exonic_splicing_enhancers alternative_splicing_isoforms 13-nov-09 by bdessailly on 2009-11-13 10:15:47 as along with 3 people and 1 group yogita farhat bpcusack Orengo Group Journal Picks
	Evolution of Protein Binding Modes in Homooligomers [My Copy] Journal of Molecular Biology (30 October 2009) by J. Dayhoff posted to symmetry structural_analysis protein_interactions ppi phylogenetic_analysis interface_size interface_evolution interaction_evolution homooligomers binding_mode 13-nov-09 by bdessailly on 2009-11-13 10:07:22 as along with 1 group Orengo Group Journal Picks
	High Local Concentration: A Fundamental Strategy of Life [My Copy] Journal of Molecular Biology (31 October 2009) by Stefan Oehler, Benno Müller-Hill posted to transcriptional_control transcription protein_dna_interactions local_concentration 13-nov-09 by bdessailly on 2009-11-13 10:02:59 as along with 1 person and 1 group RamuAnandakrishnan Orengo Group Journal Picks
	Molecular Evolution of Multisubunit RNA Polymerases: Structural Analysis [My Copy] Journal of Molecular Biology (03 November 2009) by William J. Lane, Seth A. Darst posted to structure_analysis rna_polymerase beta_subunit by bdessailly on 2009-11-13 10:01:16 as
	Molecular Evolution of Multisubunit RNA Polymerases: Sequence Analysis [My Copy] Journal of Molecular Biology (03 November 2009) by William J. Lane, Seth A. Darst posted to sequence_analysis rna_polymerase beta_subunit by bdessailly on 2009-11-13 10:00:33 as
	Compensated pathogenic deviations: Analysis of structural effects [My Copy] Journal of Molecular Biology (06 November 2009) by A. Baresic posted to structure pathogenic mutations missense disease compensatory 13-nov-09 by bdessailly on 2009-11-13 09:58:59 as along with 1 group Orengo Group Journal Picks
	Joining forces in the quest for orthologs [My Copy] Genome Biology, Vol. 10, No. 9. (2009), 403. by Toni Gabaldon, Christophe Dessimoz, Julie H. Jones, Albert Vilella, Erik Sonnhammer, Suzanna Lewis posted to prediction orthology orthologue 13-nov-09 by bdessailly on 2009-09-30 14:13:48 as along with 5 people and 2 groups operon kshameer tmmurali ppgardne druvus Orengo Group Journal Picks Journal picks
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to protein_protein_interaction ppi gene_network function_prediction expression drosophila_melanogaster 13-nov-09 by bdessailly on 2009-09-22 10:20:43 as along with 8 people and 2 groups meanerelk abc623 Borelli carlk sotacam kiekyon druvus daveGerrard Orengo Group Journal Picks BergmanLab
	Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network [My Copy] Journal of Molecular Biology, Vol. 392, No. 5. (09 October 2009), pp. 1253-1265. by Kana Shimizu, Hiroyuki Toh posted to structure protein ppi interaction go disorder 13-nov-09 by bdessailly on 2009-09-21 14:17:02 as along with 8 people and 1 group jjray nzm ekotelnikova kiekyon tprpip higueruelo cabbagesofdoom reyez Orengo Group Journal Picks
	Protein promiscuity and its implications for biotechnology [My Copy] Nature Biotechnology, Vol. 27, No. 2. (09 February 2009), pp. 157-167. by Irene Nobeli, Angelo D. Favia, Janet M. Thornton posted to thornton recognition protein promiscuity interaction by bdessailly on 2009-09-15 11:06:40 as along with 5 people and 1 group guhjy pablocarb pauldobson renatomilani dbikard Orengo Group Journal Picks
	Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000490. by Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy posted to yeast protein ppi interactome interaction docking 3d-repertoire 11sep09 by bdessailly on 2009-09-11 11:45:41 as along with 4 people and 1 group klexa zwang phoenixzxl TRHvidsten Orengo Group Journal Picks
	Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network [My Copy] Genome Biology, Vol. 10, No. 9. (03 September 2009), R91. by Bolan Linghu, Evan Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi posted to network linkage go genes functional disease association 11sep09 by bdessailly on 2009-09-11 11:39:26 as along with 6 people and 1 group mchelen fstrozzi farhat saket daforerog barriot Orengo Group Journal Picks
	Hierarchical Modeling of Activation Mechanisms in the ABL and EGFR Kinase Domains: Thermodynamic and Mechanistic Catalysts of Kinase Activation by Cancer Mutations [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000487. by Anshuman Dixit, Gennady M. Verkhivker posted to mutation modeling kinase cancer 11sep09 by bdessailly on 2009-09-11 11:38:28 as along with 1 group Orengo Group Journal Picks
	A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000474. by James C. Adams, Michael J. Keiser, Li Basuino, et al.Henry F. Chambers, Deok-Sun Lee, Olaf G. Wiest, Patricia C. Babbitt posted to small similarity molecule metabolism enzymes drug 11sep09 by bdessailly on 2009-09-11 11:36:40 as along with 8 people and 1 group sobolevnrm nickolay klexa pablocarb ptrobajo biomcgary reyez thomaskelder Orengo Group Journal Picks
	Community-wide analysis of microbial genome sequence signatures [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R85. by Gregory J. Dick, Anders F. Andersson, Brett J. Baker, et al.Sheri L. Simmons, Brian C. Thomas, A. Pepper Yelton, Jillian F. Banfield posted to signature metagenomics genome composition 11sep09 by bdessailly on 2009-09-10 16:55:29 as along with 8 people and 2 groups ajsferreira dakelley druvus skembel djkt jonilaserson neils barriot Orengo Group Journal Picks iSEEM
	50 Years of Protein Structure Determination [My Copy] Journal of Molecular Biology, Vol. 392, No. 1. (11 September 2009), pp. 1-1. by Peter E. Wright posted to structure protein history by bdessailly on 2009-09-01 11:25:54 as along with 1 person and 1 group reyez Orengo Group Journal Picks
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by O. Redfern, B. Dessailly, C. Orengo posted to function structure superfamily by bdessailly on 2009-08-03 04:26:36 as along with 8 people and 1 group dfdong yylin robfsouza guhjy paulschlesinger marck chad_davis janasont Orengo Group Journal Picks
	Relating destabilizing regions to known functional sites in proteins. [My Copy] BMC bioinformatics, Vol. 8 (30 April 2007), 141. by Benoît H. Dessailly, Marc F. Lensink, Shoshana J. Wodak posted to destabilizing functional protein region site structure by bdessailly on 2009-08-03 04:25:50 as along with 1 person and 2 groups Einat Orengo Group Journal Picks structural_bioinformatics
	LigASite--a database of biologically relevant binding sites in proteins with known apo-structures. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by Benoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak posted to binding bound database pdb protein structure unbound by bdessailly on 2009-08-03 04:25:06 as along with 1 person and 1 group ramensky Orengo Group Journal Picks
	Exploiting structural classifications for function prediction: towards a domain grammar for protein function [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (22 June 2009), pp. 349-356. by Benoît H. Dessailly, Oliver C. Redfern, Alison Cuff, Christine A. Orengo posted to domain function grammar protein structure superfamily by bdessailly on 2009-08-03 04:23:57 as along with 2 people and 1 group dfdong paulschlesinger Orengo Group Journal Picks
	PSI-2: structural genomics to cover protein domain family space. [My Copy] Structure (London, England : 1993), Vol. 17, No. 6. (10 June 2009), pp. 869-881. by Benoît H. Dessailly, Rajesh Nair, Lukasz Jaroszewski, et al.J. Eduardo Fajardo, Andrei Kouranov, David Lee, Andras Fiser, Adam Godzik, Burkhard Rost, Christine Orengo posted to domain family genomics psi-2 space structural by bdessailly on 2009-08-03 04:23:00 as along with 2 people and 2 groups neils AlexBateman Orengo Group Journal Picks Journal picks
	The evolution of protein functions and networks: a family-centric approach. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 745-750. by Benoît H. Dessailly, Adam J. Reid, Corin Yeats, Jonathan G. Lees, Alison Cuff, Christine A. Orengo posted to function network protein structure superfamily by bdessailly on 2009-08-03 04:21:43 as along with 1 group Orengo Group Journal Picks
	The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process [My Copy] Genome Biology, Vol. 10, No. 5. (2009), R58. by Erick Antezana, Mikel Egana, Ward Blonde, et al.Aitzol Illarramendi, Inaki Bilbao, Bernard De Baets, Robert Stevens, Vladimir Mironov, Martin Kuiper posted to 10jul09 cell cyce ontology by bdessailly on 2009-07-10 15:01:48 as along with 7 people and 1 group druvus guhjy tmmurali daforerog behindtherabbit fgibson dullhunk Orengo Group Journal Picks
	The conservation and evolutionary modularity of metabolism [My Copy] Genome Biology, Vol. 10, No. 6. (12 June 2009), R63. by Jose P. Alvarez, Chris Sanford, John Parkinson posted to 10jul09 core enzymes evolution metabolism pathway by bdessailly on 2009-07-10 14:59:49 as along with 9 people and 1 group venancio carlk adampah barriot biomcgary michaelbarton Winzer tomhebbron grahamc Orengo Group Journal Picks
	Understanding the Functional Roles of Amino Acid Residues in Enzyme Catalysis [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 560-577. by Gemma L. Holliday, John B. O. Mitchell, Janet M. Thornton posted to catalysis csa macie mechanism thornton by bdessailly on 2009-07-10 14:13:26 as along with 4 people and 1 group nickolay carlosjavierna ucbcjbm pablocarb Orengo Group Journal Picks

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13-nov-09	8
protein	8
structure	8
11sep09	5
ppi	4
function	3
interaction	3
superfamily	3
10jul09	2
beta_subunit	2
disease	2
domain	2
enzymes	2
functional	2
go	2
metabolism	2
network	2
rna_polymerase	2
thornton	2
3d-repertoire	1
alternative_splicing_isoforms	1
association	1
binding	1
binding_mode	1
bound	1
cancer	1
catalysis	1
cell	1
compensatory	1
composition	1
core	1
csa	1
cyce	1
database	1
destabilizing	1
disorder	1
docking	1
drosophila_melanogaster	1
drug	1
evolution	1
exonic_splicing_enhancers	1
exonic_splicing_silencers	1
expression	1
family	1
functional_novelty	1
function_prediction	1
gene_duplication	1
gene_network	1
genes	1
genome	1
genomics	1
grammar	1
history	1
homooligomers	1
interaction_evolution	1
interactome	1
interface_evolution	1
interface_size	1
kinase	1
lincrna	1
linkage	1
local_concentration	1
long_intergenic_noncoding_rna	1
macie	1
macrorna	1
mechanism	1
metagenomics	1
missense	1
modeling	1
molecule	1
mouse	1
mutation	1
mutations	1
ncrna	1
noncoding_transcriptome	1
ontology	1
orthologue	1
orthology	1
pathogenic	1
pathway	1
pdb	1
phylogenetic_analysis	1
prediction	1
promiscuity	1
protein_dna_interactions	1
protein_interactions	1
protein_protein_interaction	1
psi-2	1
recognition	1
region	1
sequence_analysis	1
sequence_conservation	1
signature	1
similarity	1
site	1
small	1
space	1
structural	1
structural_analysis	1
structure_analysis	1
symmetry	1
transcript_catalogues	1
transcription	1
transcriptional_control	1
unbound	1
yeast	1

bdessailly's library 26 articles Export

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