DASMI: exchanging, annotating and assessing molecular interaction data Export

@article{citeulike:4510973, abstract = {Motivation: Ever increasing amounts of biological interaction data are being accumulated worldwide, but they are currently not readily accessible to the biologist at a single site. New techniques are required for retrieving, sharing and presenting data spread over the Internet. Results: We introduce the DASMI system for the dynamic exchange, annotation and assessment of molecular interaction data. DASMI is based on the widely used Distributed Annotation System (DAS) and consists of a data exchange specification, web servers for providing the interaction data and clients for data integration and visualization. The decentralized architecture of DASMI affords the online retrieval of the most recent data from distributed sources and databases. DASMI can also be extended easily by adding new data sources and clients. We describe all DASMI components and demonstrate their use for protein and domain interactions. Availability: The DASMI tools are available at http://www.dasmi.de/ and http://ipfam.sanger.ac.uk/graph. The DAS registry and the DAS 1.53E specification is found at http://www.dasregistry.org/. Contact: mario.albrecht@mpi-inf.mpg.de Supplementary information: Supplementary data and all figures in color are available at Bioinformatics online. 10.1093/bioinformatics/btp142}, author = {Blankenburg, Hagen and Finn, Robert D. and Prlic, Andreas and Jenkinson, Andrew M. and Ramirez, Fidel and Emig, Dorothea and Schelhorn, Sven-Eric and Buch, Joachim and Lengauer, Thomas and Albrecht, Mario}, citeulike-article-id = {4510973}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp142}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/10/1321.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/10/1321.full.pdf}, citeulike-linkout-3 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/10/1321}, citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/19420069}, citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=19420069}, day = {15}, doi = {10.1093/bioinformatics/btp142}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {annotation, interesting}, month = {May}, number = {10}, pages = {1321--1328}, posted-at = {2009-05-14 19:50:28}, priority = {2}, title = {DASMI: exchanging, annotating and assessing molecular interaction data}, url = {http://dx.doi.org/10.1093/bioinformatics/btp142}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:4510973 L3 - citeulike-article-id:4510973 N2 - Motivation: Ever increasing amounts of biological interaction data are being accumulated worldwide, but they are currently not readily accessible to the biologist at a single site. New techniques are required for retrieving, sharing and presenting data spread over the Internet. Results: We introduce the DASMI system for the dynamic exchange, annotation and assessment of molecular interaction data. DASMI is based on the widely used Distributed Annotation System (DAS) and consists of a data exchange specification, web servers for providing the interaction data and clients for data integration and visualization. The decentralized architecture of DASMI affords the online retrieval of the most recent data from distributed sources and databases. DASMI can also be extended easily by adding new data sources and clients. We describe all DASMI components and demonstrate their use for protein and domain interactions. Availability: The DASMI tools are available at http://www.dasmi.de/ and http://ipfam.sanger.ac.uk/graph. The DAS registry and the DAS 1.53E specification is found at http://www.dasregistry.org/. Contact: mario.albrecht@mpi-inf.mpg.de Supplementary information: Supplementary data and all figures in color are available at Bioinformatics online. 10.1093/bioinformatics/btp142 IS - 10 JF - Bioinformatics SN - 1460-2059 EP - 1328 TI - DASMI: exchanging, annotating and assessing molecular interaction data VL - 25 SP - 1321 KW - annotation KW - interesting AU - Blankenburg, Hagen AU - Finn, Robert AU - Prlic, Andreas AU - Jenkinson, Andrew AU - Ramirez, Fidel AU - Emig, Dorothea AU - Schelhorn, Sven-Eric AU - Buch, Joachim AU - Lengauer, Thomas AU - Albrecht, Mario PY - 2009/05/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp142 ER -