Experience using web services for biological sequence analysis. Export

@article{citeulike:3008520, abstract = {Programmatic access to data and tools through the web using so-called web services has an important role to play in bioinformatics. In this article, we discuss the most popular approaches based on SOAP/WS-I and REST and describe our, a cross section of the community, experiences with providing and using web services in the context of biological sequence analysis. We briefly review main technological approaches as well as best practice hints that are useful for both users and developers. Finally, syntactic and semantic data integration issues with multiple web services are discussed.}, author = {Stockinger, Heinz and Attwood, Teresa and Chohan, Shahid Nadeem N. and C\^{o}t\'{e}, Richard and Cudr\'{e}-Mauroux, Philippe and Falquet, Laurent and Fernandes, Pedro and Finn, Robert D. and Hupponen, Taavi and Korpelainen, Eija and Labarga, Alberto and Laugraud, Aurelie and Lima, Tania and Pafilis, Evangelos and Pagni, Marco and Pettifer, Steve and Phan, Isabelle and Rahman, Nazim}, citeulike-article-id = {3008520}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bib/bbn029}, citeulike-linkout-1 = {http://bib.oxfordjournals.org/cgi/content/abstract/9/6/493}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/18621748}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=18621748}, day = {11}, doi = {10.1093/bib/bbn029}, issn = {1477-4054}, journal = {Briefings in bioinformatics}, keywords = {annotation, bioinformatics, cgi, rest, review, sequence, soap, web-services}, month = {November}, number = {6}, pages = {493--505}, posted-at = {2009-02-09 12:19:12}, priority = {2}, title = {Experience using web services for biological sequence analysis.}, url = {http://dx.doi.org/10.1093/bib/bbn029}, volume = {9}, year = {2008} }

TY - JOUR ID - citeulike:3008520 L3 - citeulike-article-id:3008520 N2 - Programmatic access to data and tools through the web using so-called web services has an important role to play in bioinformatics. In this article, we discuss the most popular approaches based on SOAP/WS-I and REST and describe our, a cross section of the community, experiences with providing and using web services in the context of biological sequence analysis. We briefly review main technological approaches as well as best practice hints that are useful for both users and developers. Finally, syntactic and semantic data integration issues with multiple web services are discussed. IS - 6 JF - Briefings in bioinformatics SN - 1477-4054 EP - 505 TI - Experience using web services for biological sequence analysis. VL - 9 SP - 493 KW - annotation KW - bioinformatics KW - cgi KW - rest KW - review KW - sequence KW - soap KW - web-services AU - Stockinger, Heinz AU - Attwood, Teresa AU - Chohan, Shahid Nadeem AU - Côté, Richard AU - Cudré-Mauroux, Philippe AU - Falquet, Laurent AU - Fernandes, Pedro AU - Finn, Robert AU - Hupponen, Taavi AU - Korpelainen, Eija AU - Labarga, Alberto AU - Laugraud, Aurelie AU - Lima, Tania AU - Pafilis, Evangelos AU - Pagni, Marco AU - Pettifer, Steve AU - Phan, Isabelle AU - Rahman, Nazim PY - 2008/11/11/ UR - http://dx.doi.org/10.1093/bib/bbn029 ER -