From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits Export

@incollection{citeulike:3574826, abstract = {Logical modelling and Petri nets constitute two complementary approaches for the dynamical modelling of biological regulatory networks. Leaning on a translation of logical models into standard Petri nets, we propose a formalisation of the notion of circuit functionality in the Petri net framework. This approach is illustrated with the modelling and analysis of a molecular regulatory network involved in the control of Th-lymphocyte differentiation. Keywords: genetic regulatory graphs, Petri nets, feedback circuit, discrete dynamics, qualitative analysis.}, author = {Remy, Elisabeth and Ruet, Paul and Mendoza, Luis and Thieffry, Denis and Chaouiya, Claudine}, citeulike-article-id = {3574826}, citeulike-linkout-0 = {http://dx.doi.org/10.1007/11905455_3}, citeulike-linkout-1 = {http://www.springerlink.com/content/w30180884311g787}, doi = {10.1007/11905455_3}, journal = {Transactions on Computational Systems Biology VII}, keywords = {book-chapter, dynamic, genetics, genomics, graph, modeling, petri-nets, regulation}, pages = {56--72}, posted-at = {2008-11-18 16:01:29}, priority = {5}, title = {From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits}, url = {http://dx.doi.org/10.1007/11905455_3}, year = {2006} }

TY - CHAP ID - citeulike:3574826 L3 - citeulike-article-id:3574826 N2 - Logical modelling and Petri nets constitute two complementary approaches for the dynamical modelling of biological regulatory networks. Leaning on a translation of logical models into standard Petri nets, we propose a formalisation of the notion of circuit functionality in the Petri net framework. This approach is illustrated with the modelling and analysis of a molecular regulatory network involved in the control of Th-lymphocyte differentiation. Keywords: genetic regulatory graphs, Petri nets, feedback circuit, discrete dynamics, qualitative analysis. JF - Transactions on Computational Systems Biology VII EP - 72 TI - From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits SP - 56 KW - book-chapter KW - dynamic KW - genetics KW - genomics KW - graph KW - modeling KW - petri-nets KW - regulation AU - Remy, Elisabeth AU - Ruet, Paul AU - Mendoza, Luis AU - Thieffry, Denis AU - Chaouiya, Claudine PY - 2006/// UR - http://dx.doi.org/10.1007/11905455_3 ER -