benjaminsb's library 31 articles Export

	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to no-tag by benjaminsb on 2009-09-22 22:29:11 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Patterns in spontaneous mutation revealed by human–baboon sequence comparison [My Copy] Trends in Genetics, Vol. 18, No. 11. (01 November 2002), pp. 544-547. by J. Silva, A. Kondrashov posted to human mutation rate by benjaminsb on 2009-05-27 11:20:14 as
	Hypermutable Non-Synonymous Sites Are under Stronger Negative Selection [My Copy] PLoS Genet, Vol. 4, No. 11. (28 November 2008), e1000281. by Steffen Schmidt, Anna Gerasimova, Fyodor A. Kondrashov, Ivan A. Adzuhbei, Alexey S. Kondrashov, Shamil Sunyaev posted to human mutation rate by benjaminsb on 2009-05-27 11:18:09 as along with 2 people ilyashl bpcusack
	Mutation rates differ among regions of the mammalian genome [My Copy] Nature, Vol. 337, No. 6204. (1989), pp. 283-285. by K. H. Wolfe, P. M. Sharp, W. H. Li posted to human mutation rate by benjaminsb on 2009-05-27 11:15:49 as
	Estimate of the Mutation Rate per Nucleotide in Humans [My Copy] Genetics, Vol. 156, No. 1. (1 September 2000), pp. 297-304. by Michael W. Nachman, Susan L. Crowell posted to human mutation rate by benjaminsb on 2009-05-27 11:11:10 as along with 7 people and 1 group gbloeb sriram_s nagendraproj skumagai ryanraaum stajich gwenknight Mycology
	Deterministic Mutation Rate Variation in the Human Genome [My Copy] Genome Research, Vol. 12, No. 9. (1 September 2002), pp. 1350-1356. by Nick G. Smith, Matthew T. Webster, Hans Ellegren posted to gc genome human mutation rate variation by benjaminsb on 2009-04-16 14:45:04 as along with 1 person coldmeadow
	Population genomics of domestic and wild yeasts. [My Copy] Nature, Vol. 458, No. 7236. (19 March 2009), pp. 337-341. by G. Liti, D. M. Carter, A. M. Moses, et al.J. Warringer, L. Parts, S. A. James, R. P. Davey, I. N. Roberts, A. Burt, V. Koufopanou, I. J. Tsai, C. M. Bergman, D. Bensasson, M. J. O'Kelly, A. van Oudenaarden, D. B. Barton, E. Bailes, A. N. Nguyen, M. Jones, M. A. Quail, I. Goodhead, S. Sims, F. Smith, A. Blomberg, R. Durbin, E. J. Louis posted to genetics genotype polymorphism population snp strains yeast by benjaminsb on 2009-04-16 14:40:51 as along with 12 people and 3 groups michaelbarton aprasad emptyhb dpollard fungal absterga anphony druvus stajich jasontsai skoch3 dullhunk RockmanLab Mycology Koch_Lab
	Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1591-1605. by Nadia D. Singh, Peter F. Arndt, Andrew G. Clark, Charles F. Aquadro posted to drosophila mutation rate variation by benjaminsb on 2009-04-15 18:35:48 as along with 5 people operon michaelbarton katholt djkt bmajoros
	Human mutation rate associated with DNA replication timing [My Copy] Nat Genet, Vol. 41, No. 4. (April 2009), pp. 393-395. by John A. Stamatoyannopoulos, Ivan Adzhubei, Robert E. Thurman, Gregory V. Kryukov, Sergei M. Mirkin, Shamil R. Sunyaev posted to genetic human mutation rate variation by benjaminsb on 2009-04-15 10:03:44 as along with 11 people and 2 groups PaulaBO daveGerrard bmajoros coela polivares absterga cisevol Annab fenghezi megraw djkt JLab BergmanLab
	Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. [My Copy] Genetics, Vol. 178, No. 1. (1 January 2008), pp. 67-82. by G. I. Lang, A. W. Murray posted to mutation rate variation yeast by benjaminsb on 2009-04-15 10:01:28 as along with 4 people and 1 group dbensasson Annab gruberjd stajich Mycology
	Silent but Not Static: Accelerated Base-Pair Substitution in Silenced Chromatin of Budding Yeasts [My Copy] PLoS Genet, Vol. 4, No. 11. (7 November 2008), e1000247. by Leonid Teytelman, Michael B. Eisen, Jasper Rine posted to chromatin genetic mutation rate variation yeast by benjaminsb on 2009-04-15 10:00:31 as along with 5 people gderwin operon bpcusack djkt caseybrown
	Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. [My Copy] Science (New York, N.Y.), Vol. 323, No. 5912. (16 January 2009), pp. 401-404. by Shin Sasaki, Cecilia C. Mello, Atsuko Shimada, et al.Yoichiro Nakatani, Shin-Ichi Hashimoto, Masako Ogawa, Kouji Matsushima, Sam Guoping G. Gu, Masahiro Kasahara, Budrul Ahsan, Atsushi Sasaki, Taro Saito, Yutaka Suzuki, Sumio Sugano, Yuji Kohara, Hiroyuki Takeda, Andrew Fire, Shinichi Morishita posted to chromatin genetic mutation rate transcription variation by benjaminsb on 2009-04-15 09:58:15 as along with 11 people bpcusack tprpip gdb fenghezi ewilban1 taroleo jbhiatt abizar timflutre djkt pkonings
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [My Copy] Nature genetics, Vol. 34, No. 2. (11 June 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to expression networks regulation yeast by benjaminsb on 2009-03-25 14:39:25 as along with 26 people and 1 group chasmand stharward bertelsen ipark-kaist VGreiff wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
	Estimating the number of unseen variants in the human genome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 13. (31 March 2009), pp. 5008-5013. by I. Ionita-Laza, C. Lange, N. M Laird posted to human snp by benjaminsb on 2009-03-12 13:39:25 as along with 5 people jsatkosk giovanni TRHvidsten pkonings guhjy
	Network hubs buffer environmental variation in Saccharomyces cerevisiae. [My Copy] PLoS biology, Vol. 6, No. 11. (4 November 2008), e264. by Sasha F. Levy, Mark L. Siegal posted to network robustness variation yeast by benjaminsb on 2009-02-16 14:22:34 as along with 6 people biomcgary semrich emptyhb bpcusack grahamc caseybrown
	SNAP: predict effect of non-synonymous polymorphisms on function. [My Copy] Nucleic acids research, Vol. 35, No. 11. (28 June 2007), pp. 3823-3835. by Yana Bromberg, Burkhard Rost posted to polymorphism prediction snp structure by benjaminsb on 2009-02-16 11:32:24 as along with 3 people and 1 group daforerog guhjy cat_worth structural_bioinformatics
	Comparative genomics of yeast strains isolated from diverse ecological niches unveils important genome diversity [My Copy] BMC Genomics, Vol. 9 (04 November 2008), 524. by Laura Carreto, Maria F. Eiriz, Ana C. Gomes, Patricia M. Pereira, Dorit Schuller, Manuel A. S. Santos posted to copy genetics number phenotype strain type variation wild yeast by benjaminsb on 2009-02-10 08:24:58 as
	Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions [My Copy] Genome Research, Vol. 18, No. 12. (December 2008), pp. 1991-2004. by Yan Qi, Yasir Suhail, Yu-Yi Lin, Jef D. Boeke, Joel S. Bader posted to genetic interactions network prediction yeast by benjaminsb on 2009-02-05 15:24:30 as along with 6 people ajbattle dakelley colmryan carlk amonika guhjy
	Plasticity of genetic interactions in metabolic networks of yeast [My Copy] PNAS, Vol. 104, No. 7. (13 February 2007), pp. 2307-2312. by Richard Harrison, Balazs Papp, Csaba Pal, Stephen G. Oliver, Daniela Delneri posted to genetic interactions lethal networks synthetic yeast by benjaminsb on 2009-02-02 11:49:45 as along with 4 people schwartzjmc michaelbarton edwardmorrissey jiny
	Genome-Wide Prediction of C. elegans Genetic Interactions [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484. by Weiwei Zhong, Paul W. Sternberg posted to caenorhabditis genetic interactions lethal robustness synthetic by benjaminsb on 2009-02-02 11:42:32 as along with 12 people and 3 groups thegoose2 nedwards tharris lp2 lfriedl indigoviolet xwbcn nirfriedman patrycjam patrycja_missiuro mingzhi carlk C. elegans / WormBase kdl EisenLab
	Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution. [My Copy] Trends in genetics : TIG (9 September 2008) by Tanya Vavouri, Jennifer I I. Semple, Ben Lehner posted to eukaryotic evolution genetic interactions by benjaminsb on 2009-01-27 14:44:16 as along with 1 person and 1 group stajich Mycology
	Systematic interpretation of genetic interactions using protein networks [My Copy] Nat Biotech, Vol. 23, No. 5. (05 May 2005), pp. 561-566. by Ryan Kelley, Trey Ideker posted to genetic interactions lethal network pathway synthetic by benjaminsb on 2009-01-27 14:39:45 as along with 21 people and 2 groups colmryan nzm dakelley chasmand ajbattle mtaschuk lptolik nedwards okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt koller massivemayhem patrycjam patrycja_missiuro mingzhi carlk Bioinformatics EBI-regulation
	Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks [My Copy] Molecular Systems Biology, Vol. 3 (17 April 2007) by Igor Ulitsky, Ron Shamir posted to lethal network yeast by benjaminsb on 2009-01-27 09:42:30 as along with 6 people colmryan dakelley chasmand nicoleq zwang carlk
	Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes. [My Copy] Genome biology, Vol. 8, No. 12. (2007) by Kriston L. McGary, Insuk Lee, Edward M. Marcotte posted to gene lethal network yeast by benjaminsb on 2009-01-27 09:41:27 as along with 6 people jiny raiyar cjeans biomcgary barriot entropy
	Robustness and evolvability: a paradox resolved. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 275, No. 1630. (7 January 2008), pp. 91-100. by A. Wagner posted to evolvability phenotype rna robustness by benjaminsb on 2009-01-22 15:41:19 as along with 6 people chica Scis0000002 wangbo renewang dbikard cambray
	Innovation and robustness in complex regulatory gene networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 34. (21 August 2007), pp. 13591-13596. by S. Ciliberti, O. C. Martin, A. Wagner posted to evolvability networks robustness by benjaminsb on 2009-01-22 15:40:10 as along with 12 people and 3 groups abhishek_tiwari mjoach ocs balicea dakelley cmzmasek dlobo jmenche dpollard sebastien_vigneau zwang cisevol GEB EisenLab cis-regulatory-evolution
	Robustness in simple biochemical networks [My Copy] Nature, Vol. 387, No. 6636. (26 June 1997), pp. 913-917. by N. Barkai, S. Leibler posted to evolvability network pathway robustness by benjaminsb on 2009-01-22 15:29:09 as along with 1 person cjryan
	Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e92. by Jasmin Fisher, Nir Piterman, Alex Hajnal, Thomas A. Henzinger posted to development elegans modelling vulva by benjaminsb on 2009-01-15 14:14:06 as along with 4 people and 2 groups kristgy roland_ewald carmaus ajgentles dIEMoSIRIS MoSi-Rostock
	Sloppiness, robustness, and evolvability in systems biology. [My Copy] Current opinion in biotechnology, Vol. 19, No. 4. (August 2008), pp. 389-395. by Bryan C. Daniels, Yan-Jiun J. Chen, James P. Sethna, Ryan N. Gutenkunst, Christopher R. Myers posted to evolution review robustness by benjaminsb on 2009-01-14 11:51:49 as along with 4 people PaperCollector abhishek_tiwari schwartzjmc cjryan
	Distributed robustness in cellular networks: insights from synthetic evolved circuits [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 33. (6 April 2009), pp. 393-400. by Javier Macia, Ricard V. Solé posted to evolution lethal modeling synthetic by benjaminsb on 2009-01-14 11:51:03 as along with 1 person sugarexpletive
	Prediction of phenotype and gene expression for combinations of mutations [My Copy] Mol Syst Biol, Vol. 3 (27 March 2007) by Gregory W. Carter, Susanne Prinz, Christine Neou, et al.Patrick J. Shelby, Bruz Marzolf, Vesteinn Thorsson, Timothy Galitski posted to genotype modeling network phenotype by benjaminsb on 2009-01-14 11:21:31 as along with 7 people mtaschuk balabu nicoleq zwang gwcarter jo_davies tmmurali

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benjaminsb's library 31 articles Export

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