benwei's library 22 articles Export

	BLAST Benchmarks (PowerPoint presentation) [My Copy] NCBI FTP (ftp://ftp.ncbi.nih.gov/blast/demo/benchmark) (2005) by George Coulouris posted to benchmarks bioinformatics blast by benwei on 2008-06-13 10:14:31 as
	Parallel genomic sequence-search on a massively parallel system [My Copy] In CF '07: Proceedings of the 4th international conference on Computing frontiers (2007), pp. 59-68. by Oystein Thorsen, Brian Smith, Carlos P. Sosa, et al.Karl Jiang, Heshan Lin, Amanda Peters, Wu-Chun Feng posted to bioinformatics blast parallelcomputing by benwei on 2008-06-13 09:47:20 as
	Mitrion-C Open Bio Project [My Copy] http://mitc-openbio.sourceforge.net/ by Mitrionics posted to bioinformatics blast fpga mitrionics by benwei on 2008-06-13 09:40:43 as
	Single Pass, BLAST-Like, Approximate String Matching on FPGAs [My Copy] Field-Programmable Custom Computing Machines, 2006. FCCM '06. 14th Annual IEEE Symposium on In Field-Programmable Custom Computing Machines, 2006. FCCM '06. 14th Annual IEEE Symposium on (2006), pp. 217-226. by Martin C. Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Vancourt posted to bioinformatics blast fpga by benwei on 2008-06-13 09:27:34 as
	A General Reconfigurable Architecture for the BLAST Algorithm [My Copy] The Journal of VLSI Signal Processing, Vol. 48, No. 3. (1 September 2007), pp. 189-208. by Euripides Sotiriades, Apostolos Dollas posted to bioinformatics blast fpga by benwei on 2008-06-13 09:22:09 as along with 1 person suneilmohan
	The data encryption standard in perspective [My Copy] Communications Magazine, IEEE In Communications Magazine, IEEE, Vol. 16, No. 6. (1978), pp. 5-9. by R. Davis posted to des ecryption by benwei on 2008-06-13 03:55:10 as
	A Type Architecture for Hybrid Micro-Parallel Computers [My Copy] In FCCM '06: Proceedings of the 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (2006), pp. 99-110. by Benjamin Ylvisaker, Brian Van Essen, Carl Ebeling posted to accelerators fpga microparallel by benwei on 2008-06-13 00:08:07 as along with 1 person peskin
	Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation [My Copy] Rapid System Prototyping, 2006. Seventeenth IEEE International Workshop on In Rapid System Prototyping, 2006. Seventeenth IEEE International Workshop on (2006), pp. 223-229. by E. Sotiriades, C. Kozanitis, G. Chrysos, A. Dollas posted to bioinformatics blast by benwei on 2008-06-08 00:59:39 as
	A Greedy Algorithm for Aligning DNA Sequences [My Copy] Journal of Computational Biology, Vol. 7, No. 1-2. (February 2000), pp. 203-214. by Zheng Zhang, Scott Schwartz, Lukas Wagner, Webb Miller posted to bioinformatics blast by benwei on 2008-06-08 00:08:23 as along with 6 people trishul maria_hauser AaronDarling azazello sujaikumar bozdagd
	The Design, Implementation, and Evaluation of mpiBLAST [My Copy] by Aaron E. Darling, Lucas Carey, Wu C. Feng posted to bioinformatics blast cse mpiblast parallelcomputing by benwei on 2008-06-07 08:22:38 as along with 1 person parnell
	Cuckoo Hashing [My Copy] Lecture Notes in Computer Science, Vol. 2161 (2001), pp. 121-??. by Rasmus Pagh, Flemming F. Rodler posted to blast cuckoohashing hashing by benwei on 2008-06-05 08:17:32 as along with 2 people AbnerCYH xsolomon
	Mercury BLASTN: Faster DNA Sequence Comparison Using a Streaming Hardware Architecture [My Copy] In Reconfigurable Systems Summer Institute (July 2007) by Jeremy D. Buhler, Joseph M. Lancaster, Arpith C. Jacob, Roger D. Chamberlain posted to bioinformatics blast cse fpga mercury parallelcomputing by benwei on 2008-05-30 08:53:59 as along with 1 person mmartin
	Space/time trade-offs in hash coding with allowable errors [My Copy] Commun. ACM, Vol. 13, No. 7. (July 1970), pp. 422-426. by Burton H. Bloom posted to bloomfilter cse hashing by benwei on 2008-05-29 04:08:34 as along with 12 people and 1 group burt tnhh ecronin lillejul cthachuk diegolino_veneziano damaru jlxu babyone meisner pcamacho jweslley InformationRetrieval
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to bioinformatics blast cse by benwei on 2008-05-25 05:05:38 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Space efficient hash tables with worst case constant access time [My Copy] (2003) by D. Fotakis, R. Pagh, P. Sanders, P. Spirakis posted to cuckoohashing hashing by benwei on 2008-05-22 09:02:14 as along with 1 person dgront
	Efficient hardware hashing functions for high performance computers [My Copy] Computers, IEEE Transactions on In Computers, IEEE Transactions on, Vol. 46, No. 12. (1997), pp. 1378-1381. by M. V. Ramakrishna, E. Fu, E. Bahcekapili posted to h3 hardware hashing by benwei on 2008-02-21 07:11:38 as along with 1 person suneilmohan
	Storing a sparse table [My Copy] Commun. ACM, Vol. 22, No. 11. (November 1979), pp. 606-611. by Robert E. Tarjan, Andrew C. Yao posted to cse hashing sparse by benwei on 2008-02-14 11:47:52 as
	Biosequence similarity search on the mercury system [My Copy] (2004) by P. Krishnamurthy, J. Buhler, R. Chamberlain, M. Franklin, K. Gyang, J. Lancaster posted to bioinformatics blast fpga mercury by benwei on 2008-02-14 08:37:22 as
	Improved BLAST searches using longer words for protein seeding [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2949-2951. by Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schaffer, Richa Agarwala posted to bioinformatics blast by benwei on 2008-01-17 08:55:14 as along with 2 people guhjy ardalby
	FPGA-accelerated seed generation in Mercury BLASTP [My Copy] Field-Programmable Custom Computing Machines, 2007. FCCM 2007. 15th Annual IEEE Symposium on In Field-Programmable Custom Computing Machines, 2007. FCCM 2007. 15th Annual IEEE Symposium on (2007), pp. 95-106. by Arpith Jacob, Joseph Lancaster, Jeremy Buhler, Roger D. Chamberlain posted to bioinformatics blast fpga by benwei on 2008-01-17 08:48:12 as along with 1 person reactgary
	RC-BLAST: towards a portable, cost-effective open source hardware implementation [My Copy] Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International (2005), 8 pp.. by K. Muriki, K. D. Underwood, R. Sass posted to bioinformatics blast fpga parallelcomputing by benwei on 2008-01-17 08:47:13 as along with 2 people vivekv80 smithmc
	String Matching Problems from Bioinformatics Which Still Need Better Solutions Extended Abstract [My Copy] String Processing and Information Retrieval: 9th International Symposium, SPIRE 2002, Lisbon, Portugal, September 11-13, 2002. Proceedings (2002), pp. 475-480. by Gaston H. Gonnet posted to bioinformatics openproblems overview stringmatching by benwei on 2007-11-06 18:57:46 as

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blast	15
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fpga	8
hashing	5
cse	5
parallelcomputing	4
mercury	2
cuckoohashing	2
benchmarks	1
hardware	1
des	1
stringmatching	1
ecryption	1
mpiblast	1
mitrionics	1
microparallel	1
h3	1
bloomfilter	1
openproblems	1
overview	1
sparse	1
accelerators	1

benwei's library 22 articles Export

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