bertelsen's library 902 articles Export

	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted to statistical ontology methodology interpretation integration disease associations by bertelsen on 2009-11-19 21:44:42 as along with 9 people and 1 group jfr kaarsinogen ruichu guhjy sobolevnrm mikel_egana allysonlister fgibson dullhunk baker-group
	National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge [My Copy] OMICS: A Journal of Integrative Biology, Vol. 10, No. 2. (June 2006), pp. 185-198. by Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, et al.Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G. Chute, Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F. Noy, Mark A. Musen posted to scientific ontology ontologies knowledgebase biomedicine biomedical by bertelsen on 2009-11-19 21:39:54 as along with 7 people and 3 groups vkwn irenas yas balajis dullhunk RockHI sobolevnrm dbk-lab T_lab baker-group
	Gene Expression Profiling to Identify the Histogenetic Origin of Metastatic Adenocarcinomas of Unknown Primary [My Copy] J Clin Oncol, Vol. 26, No. 27. (20 September 2008), pp. 4435-4441. by Hugo M. Horlings, Ryan K. van Laar, Jan-Martijn Kerst, et al.Helgi H. Helgason, Jelle Wesseling, Jacobus J. M. van der Hoeven, Marc O. Warmoes, Arno Floore, Anke Witteveen, Jaana Lahti-Domenici, Annuska M. Glas, Laura J. Van't Veer, Daphne de Jong posted to upt tumour metastatitic immunohistochemical histological genetic cancer adenocarcinomas by bertelsen on 2009-11-19 21:37:41 as along with 2 people Zephyrus frohike
	Cancer of Unknown Primary Site: Missing Primary or Missing Biology? [My Copy] Oncologist, Vol. 12, No. 4. (1 April 2007), pp. 418-425. by George Pentheroudakis, Evangelos Briasoulis, Nicholas Pavlidis posted to upt unknown tumour primary cancer biology by bertelsen on 2009-11-19 21:36:26 as
	Reverse Phase Protein Microarrays for Theranostics and Patient-Tailored Therapy [My Copy] Tissue Proteomics (2008), pp. 113-128. by Virginia Espina, Julia Wulfkuhle, Valerie S. Calvert, Lance A. Liotta, Emanuel F. Petricoin posted to signal-transduction protein personalized-medicine microarrays by bertelsen on 2009-11-18 23:12:25 as
	Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 155-164. by Jérôme Eeckhoute, Mathieu Lupien, Myles Brown posted to tiling systems-biology oligonucleotide microarray functional-genomics chromatin chip-chip array by bertelsen on 2009-11-18 22:43:10 as
	ChIP-chip comes of age for genome-wide functional analysis. [My Copy] Cancer research, Vol. 66, No. 14. (15 July 2006), pp. 6899-6902. by Jiejun Wu, Laura T. Smith, Christoph Plass, Tim H-M H. Huang posted to microarray gene-regulation functional-genomics epigenetic chip-chip by bertelsen on 2009-11-18 22:41:00 as along with 5 people and 1 group nklee guhjy imedina weimingzhe tvdbulck BioinfoCIPF
	Bioinformatics and genomics for opening new perspective for personalized care. [My Copy] Studies in health technology and informatics, Vol. 134 (2008), pp. 47-58. by Hiroshi Tanaka posted to perspective personalized-medicine bioinformatics by bertelsen on 2009-11-18 22:14:34 as
	Standardization of microarray and pharmacogenomics data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 316 (2006), pp. 111-157. by Casey S. Husser, Jeffrey R. Buchhalter, O. Scott Raffo, et al.Amnon Shabo, Steven H. Brown, Karen E. Lee, Peter L. Elkin posted to standardization pharmacogenomics microarray by bertelsen on 2009-11-18 22:10:42 as
	The integration of personalized and systems medicine: bioinformatics support for pharmacogenomics and drug discovery. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 448 (2008), pp. 1-19. by Qing Yan posted to systems pharmacogenomics personalized-medicine medicine drug-discovery bioinformatics by bertelsen on 2009-11-18 21:32:28 as along with 1 person cmmorel
	DNA microarrays: a powerful genomic tool for biomedical and clinical research. [My Copy] Molecular medicine (Cambridge, Mass.), Vol. 13, No. 9-10. (t 2007), pp. 527-541. by Victor Trevino, Francesco Falciani, Hugo A. Barrera-Saldaña posted to tool review multidisciplinary microarray clinical biomedical by bertelsen on 2009-11-18 20:42:42 as
	Information theory provides a comprehensive framework for the evaluation of protein structure predictions. [My Copy] Proteins, Vol. 74, No. 3. (15 February 2009), pp. 701-711. by Rosemarie Swanson, Marina Vannucci, Jerry W. Tsai posted to theory structural-biology similarity_measures protein prediction information framework by bertelsen on 2009-11-18 20:39:06 as
	Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2129-2136. by Alejandro Cruz-Marcelo, Rudy Guerra, Marina Vannucci, Yiting Li, Ching C. Lau, Tsz-Kwong K. Man posted to pre-processing mass_spectroscopy comparison algorithms by bertelsen on 2009-11-18 20:36:45 as along with 2 people guhjy nuin
	Application of microarrays for DNA methylation profiling. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 439 (2008), pp. 109-129. by Axel Schumacher, Andreas Weinhäusl, Arturas Petronis posted to profiling microarray methylation epigenetic dna by bertelsen on 2009-11-18 20:33:53 as
	A novel wavelet-based thresholding method for the pre-processing of mass spectrometry data that accounts for heterogeneous noise. [My Copy] Proteomics, Vol. 8, No. 15. (August 2008), pp. 3019-3029. by Deukwoo Kwon, Marina Vannucci, Joon Jin J. Song, Jaesik Jeong, Ruth M. Pfeiffer posted to pre-processing noise mass_spectroscopy heterogeneous by bertelsen on 2009-11-18 20:32:40 as
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	Bayesian variable selection in multinomial probit models to identify molecular signatures of disease stage. [My Copy] Biometrics, Vol. 60, No. 3. (September 2004), pp. 812-819. by Naijun Sha, Marina Vannucci, Mahlet G. Tadesse, et al.Philip J. Brown, Ilaria Dragoni, Nick Davies, Tracy C. Roberts, Andrea Contestabile, Mike Salmon, Chris Buckley, Francesco Falciani posted to variable_selection signatures probit multinomial molecular mixtures mcmc functional-genomics bayesian by bertelsen on 2009-11-18 20:23:05 as along with 1 person frohike
	Clinical bioinformatics. [My Copy] Chang Gung medical journal, Vol. 28, No. 4. (April 2005), pp. 201-211. by Phei Lang L. Chang posted to review medical health clinical bioinformatics by bertelsen on 2009-11-18 13:00:37 as
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted to methods gene-set-analysis enrichment-analysis correlation comparison by bertelsen on 2009-11-16 21:28:46 as along with 26 people and 1 group giovenko dipenps holecm lwaldron jfr ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit lptolik balicea daforerog Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to scientist scientific job by bertelsen on 2009-11-16 21:24:15 as along with 123 people and 6 groups cefa gvdh penneyft welliegirl thegoose xawen chriswillmott nellapower ishiken andreff claudiushauptmann cermak bmoores karthikraman applebyb mordiano Gorzomagnificent Horduna ajaymalik mmwoodman dbikard toszko mthomure timflutre cyounkin marsl0am jmzhuo dmorti renatomilani ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol michaelbarton dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo roys benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts Brain-like research group UWA Science Communication milab@yzu Information Integration Architecture BergmanLab Roswell Cancer Crosstalk
	Implications of applied research for prognosis and therapy of breast cancer. [My Copy] Critical reviews in oncology/hematology, Vol. 65, No. 3. (March 2008), pp. 223-234. by M. F. Barginear, T. Bradley, I. Shapira, D. R. Budman posted to therapy prognosis cancer breast_cancer by bertelsen on 2009-11-16 20:45:17 as
	The term "carcinoid" is a misnomer: the evidence based on local invasion. [My Copy] Journal of experimental & clinical cancer research : CR, Vol. 28 (2009) by Jun Soga posted to intestine carcinoid cancer by bertelsen on 2009-11-16 20:44:35 as
	Farmakogenetik og skræddersyet medicinsk behandling [My Copy] Ugeskrift for Læger, Vol. 171, No. 10. (2 March 2009), 790. by Finn C. Nielsen, Niels Borregaard posted to pharmacogenomic personalized-medicine by bertelsen on 2009-11-16 20:41:43 as
	Gastroenteropancreatic neuroendocrine tumours. [My Copy] The lancet oncology, Vol. 9, No. 1. (January 2008), pp. 61-72. by Irvin M. Modlin, Kjell Oberg, Daniel C. Chung, et al.Robert T. Jensen, Wouter W. de Herder, Rajesh V. Thakker, Martyn Caplin, Gianfranco Delle Fave, Greg A. Kaltsas, Eric P. Krenning, Steven F. Moss, Ola Nilsson, Guido Rindi, Ramon Salazar, Philippe Ruszniewski, Anders Sundin posted to neuroendocrine_tumours gastric clinical cancer by bertelsen on 2009-11-16 20:35:23 as
	Discovery of Regulatory Elements is Improved by a Discriminatory Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (13 November 2009), e1000562. by Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh posted to transcription-factor regulatory networks motif gene-regulation discover by bertelsen on 2009-11-13 15:01:44 as along with 3 people ptrobajo maximilianh TRHvidsten
	On the complexity of multiple sequence alignment. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 1, No. 4. (1994), pp. 337-348. by L. Wang, T. Jiang posted to sequence-alignment multiple computational complexity by bertelsen on 2009-11-13 14:57:32 as along with 5 people Lombardo_7 sebk treangen newton1234 yylin
	[5] Standards in Gene Expression Microarray Experiments [My Copy] Methods in Enzymology, Vol. 411 (2006), pp. 63-78. by M. Salit posted to standard microarray medicine genomics gene-expression experiment cross-study cross-laboratory by bertelsen on 2009-11-06 15:20:34 as
	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D868-872. by Helen Parkinson, Misha Kapushesky, Nikolay Kolesnikov, et al.Gabriella Rustici, Mohammad Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Z. Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna G. Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma posted to rna-seq repository microarray gene-expression functional-genomics database atlas by bertelsen on 2009-11-05 22:40:22 as along with 9 people ptrobajo daforerog guhjy samfromklamart vkwn Borelli jfr kittipat abizar
	Segmentation and intensity estimation of microarray images using a gamma-t mixture model [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 458-465. by Jangsun Baek, Young S. Son, Geoffrey J. McLachlan posted to segmentation mixture microarray image-processing gamma cdna by bertelsen on 2009-10-28 12:22:05 as
	OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Pieter Bt B. Neerincx, Han Rauwerda, Haisheng Nie, Martien Am A. Groenen, Timo M. Breit, Jack Am A. Leunissen posted to webservices tool target specificity pipelines oligonucleotide microarray high-throughput annotation by bertelsen on 2009-10-28 12:07:39 as
	Bayesian variable selection methods [My Copy] Bayesian Analysis, Vol. 4, No. 1. (2009), pp. 85-118. by R. B. O'Hara, M. J. Sillanpää posted to selection bayesian by bertelsen on 2009-10-15 06:06:40 as
	Trans-Study Projection of Genomic Biomarkers in Analysis of Oncogene Deregulation and Breast Cancer [My Copy] In The Oxford Handbook of Applied Bayesian Analysis (April 2010) by Dan Merl, Joe Lucas, Joe Nevins, Haige Shen, Mike West edited by Tony O'Hagan, Mike West posted to translational-medicine oncogenesis factor-analysis cancer biomarker by bertelsen on 2009-10-13 20:25:24 as
	Identifiability, separability, and uniqueness of linear ICA models [My Copy] Signal Processing Letters, IEEE, Vol. 11, No. 7. (21 June 2004), pp. 601-604. by J. Eriksson, V. Koivunen posted to uniqueness models linear identifiability ica by bertelsen on 2009-10-13 17:10:00 as along with 1 person ganeshrnaik
	Identifiability, exchangeability and confounding revisited. [My Copy] Epidemiologic perspectives & innovations : EP+I, Vol. 6 (04 September 2009), 4. by Sander Greenland, James M. Robins posted to identifiability exchangeability confounding by bertelsen on 2009-10-13 17:07:59 as along with 1 person guhjy
	Identifiability of full, marginal, and conditional factor analysis models [My Copy] Statistics & Probability Letters, Vol. 23, No. 4. (June 1995), pp. 343-350. by M. Ihara posted to models identifiability factor-analysis by bertelsen on 2009-10-13 17:07:20 as along with 1 person engelhardt
	Building Blocks For Variational Bayesian Learning Of Latent Variable Models [My Copy] Journal of Machine Learning Research, Vol. 8 (2007), pp. 155-201. by Tapani Raiko, Harri Valpola, Markus Harva, Juha Karhunen posted to variational-inference tool software latent bayesian by bertelsen on 2009-10-13 17:06:10 as along with 1 person rorymulvaney
	Independent component analysis, A new concept? [My Copy] Signal Processing, Vol. 36, No. 3. (April 1994), pp. 287-314. by Pierre Comon posted to ica by bertelsen on 2009-10-08 21:37:32 as along with 1 person creswick
	On scale mixtures of normal distributions [My Copy] Biometrika, Vol. 74, No. 3. (1 September 1987), pp. 646-648. by M. I. K. E. West posted to probability normal mixtures gaussian family exponential distributions by bertelsen on 2009-10-08 20:55:53 as along with 1 person rfarias
	The application of single nucleotide polymorphism microarrays in cancer research. [My Copy] Current genomics, Vol. 8, No. 4. (June 2007), pp. 219-228. by Xueying Mao, Bryan D. Young, Yong-Jie J. Lu posted to snp microarray cancer application by bertelsen on 2009-10-08 00:13:27 as
	P bodies: at the crossroads of post-transcriptional pathways [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 1. (01 January 2007), pp. 9-22. by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde posted to review regulation post-transcriptional pathways p-bodies mrna localization gene-expression cytoplasmic cell-biology by bertelsen on 2009-10-07 23:24:55 as along with 3 people and 2 groups xico margaritis lzhonsailing Neuroscience WetBiology
	Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies. [My Copy] The Journal of cell biology, Vol. 179, No. 1. (8 October 2007), pp. 65-74. by Nathaniel P. Hoyle, Lydia M. Castelli, Susan G. Campbell, Leah E. Holmes, Mark P. Ashe posted to p-bodies mrna localization epg-bodies cytoplasmic cell-biology by bertelsen on 2009-10-07 23:21:14 as along with 1 person dbenn
	Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647. by Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge posted to target t-cell proliferation mrna mirna lymphocytes expression cells 3-utr by bertelsen on 2009-10-07 22:50:10 as along with 15 people and 1 group frohike danaiancu hcoller tonamswish ivanek valeriehilgers heliopais jfr dchughes djkt lisa1 bootsy emptyhb faion daforerog microRNA
	MicroRNA detection by microarray. [My Copy] Analytical and bioanalytical chemistry, Vol. 394, No. 4. (June 2009), pp. 1117-1124. by Wei Li, Kangcheng Ruan posted to mirna microarray detection by bertelsen on 2009-10-07 22:38:52 as along with 2 people and 1 group guhjy jfr microRNA
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to review regulation mrna human cancer 3-utr by bertelsen on 2009-10-07 22:17:09 as along with 1 person hcoller
	Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 673-684. by Christine Mayr, David P. Bartel posted to tumorigenesis polyadenylation oncogenesis cancer 3-utr by bertelsen on 2009-10-07 22:00:54 as along with 10 people and 1 group frohike jwfoley colinveal manto hcoller gbloeb jbhiatt ashkelon13 megraw rschulz cube_and_beyond
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to prognosis pathway-analysis oncogenesis gastric clinical cancer by bertelsen on 2009-10-07 16:15:29 as along with 3 people brianb renatomilani ptrobajo
	Integrative analysis of the cancer transcriptome [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S31-S37. by Daniel R. Rhodes, Arul M. Chinnaiyan posted to transcriptome microarray integrative cancer analysis by bertelsen on 2009-10-06 23:46:47 as along with 8 people and 2 groups daforerog cswinburne aalibes textoris ealloza shikin waghsk srp33 BioinfoCIPF GeneGo
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [My Copy] Nature genetics, Vol. 34, No. 2. (11 June 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to regulatory-modules regulators regulation original networks module-networks modular gene-expression by bertelsen on 2009-10-06 23:03:41 as along with 26 people and 1 group chasmand stharward ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
	A genomic strategy to elucidate modules of oncogenic pathway signaling networks. [My Copy] Molecular cell, Vol. 34, No. 1. (10 April 2009), pp. 104-114. by Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, et al.Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins posted to signatures signal pathway-analysis pathway oncogenesis networks modules gene caner biochemical by bertelsen on 2009-10-06 22:27:02 as along with 8 people and 1 group jfr jmstat guhjy mspivako renatomilani fenghezi shikin roys Journal picks
	Averaged gene expressions for regression. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (11 April 2007), pp. 212-227. by Mee Young Y. Park, Trevor Hastie, Robert Tibshirani posted to regression lasso hierarchical gene-expression clustering averaging by bertelsen on 2009-10-06 22:03:32 as along with 1 person jfr

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microarray	221
analysis	129
gene-expression	122
review	121
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affymetrix	48
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probe	22
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database	18
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gastric	14
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bioconductor	13
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go	13
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high-dimensional	4
hybrid	4
inhibitors	4
inner-ear	4
interface	4
invitro	4
knowledge-based	4
literature	4
map	4
medical	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pathway-analysis	4
pharmacogenomic	4
philosophy	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
combinatorial	3
component	3
correlation	3
dataset	3
differential-equation	3
differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
environment	3
enzyme	3
evaluation	3
exchangeability	3
fdr	3
gene-circuits	3
generalized	3
genes	3
genotyping	3
hmm	3
humans	3
identifiability	3
independence	3
inflammation	3
interference	3
introduction	3
languages	3
learning	3
local	3
management	3
mechanistic	3
medicine	3
metastatic	3
model-selection	3
modularity	3
multinomial	3
natural	3
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parasitology	3
pattern-recognition	3
performance	3
perturbation	3
physics	3
polymerase	3
random	3
ranking	3
regulators	3
renormalization-group-analysis	3
repository	3
reproducibility	3
resonance	3
resource	3
robust	3
signaling-system	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
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behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cells	2
chromosome-wide	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
dynamics	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
histological	2
homologous	2
image-processing	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
multi-target	2
mutations	2
neuroscience	2
non-specific	2
nucleic	2
numerical	2
octave	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
present_absent_call	2
primer	2
probesgenetics	2
probit	2
programming	2
properties	2
proteome	2
protozoan	2
rate-law	2
reasoning	2
rma	2
sage	2
saturation	2
semantic-web	2
sequential	2
set	2
signal-transduction	2
small	2
space	2
stem-cells	2
stochasticity	2
stress	2
subcellular	2
target	2
t-cell	2
threshold	2
translational-medicine	2
t-test	2
two-color	2
user-computer	2
variational-inference	2
vector	2
2d	1
454	1
5--3	1
abstracts	1
across	1
adenocarcinomas	1
agilent	1
aging	1
algebra	1
allometric	1
alphabet	1
alternate	1
analysisinstrumentationmethods	1
analytical	1
and	1
animal-communication	1
anlaysis	1
annotations	1
antisense	1
antiviral	1
applied	1
approximat	1
aquaporins	1
architecture	1
articles	1
artifacts	1
assay	1
atlas	1
atmosphere	1
atom	1
averaging	1
basic	1
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bifurcation	1
bilayer	1
binding	1
binomial	1
bioactive	1
biomechanical	1
biomedicine	1
biophysic	1
biosphere	1
black-box	1
brain	1
breast_cancer	1
bridges	1
caffeine	1
calculus	1
cancer_therapy	1
caner	1
canonical	1
cap	1
carcinoid	1
carcinoma	1
causal	1
cds	1
c-elegans	1
cell-growth	1
cell-migration	1
cell-movement	1
cell-population	1
cellular-automata	1
cellular-networks	1
cellular-response	1
cell-wall	1
cgh	1
chain	1
chemistry	1
chicken	1
chip	1
chromosomal-localization	1
chromosomes	1
civil	1
cleavage	1
climate	1
cloud-computing	1
clouds	1
cluster	1
coarse-grained	1
comment	1
community	1
comparative-genomic-hybridization	1
compartments	1
concepts	1
conditional-independence	1
conference	1
confounding	1
conserved	1
consistency	1
content-management-system	1
contrast	1
conversion	1
cooperativity	1
coordination	1
co-regulated	1
course	1
critical	1
curvature	1
curves	1
cytokines	1
cytomics	1
cytoscape	1
cytoskeleton	1
cytosol	1
dag	1
decomposition	1
density-estimation	1
diagnosis	1
diagram	1
dicer	1
dilution	1
dimension-reduction	1
discover	1
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dispersion	1
dissection	1
divergence	1
division	1
dominance	1
drug-delivery	1
drug-resistant	1
dyadic	1
dye	1
egg	1
electrophoresis	1
embryo	1
empirical-bayes	1
energy	1
enterococcus	1
epg-bodies	1
epidemiology	1
epigenome	1
epithelial	1
equilibrium	1
equipment	1
e-science	1
estimates	1
etiology	1
european	1
examples	1
expectation-maximization	1
exploration	1
exponential	1
exponential-models	1
factors	1
factorsgenetics	1
failure	1
family	1
fat-tailed	1
feature-level	1
field-theory	1
fire	1
fluctuation	1
fluorescent	1
fold-change	1
force-field	1
forest	1
formal	1
fractal	1
frequency_modulation	1
frequentist	1
functional_data_analysis	1
gain-control	1
gapdh	1
gastrin	1
gcrma	1
gel	1
gene-design	1
gene-modules	1
gene-networks	1
generality	1
generator	1
gene-set-analysis	1
gene-silencing	1
genetic_engineering	1
genome-assembly	1
geometry	1
glycan	1
glycobiology	1
glycoprotein	1
goodness-of-fit	1
gram-positive	1
heterologous	1
heuristics	1
high-precision	1
high-resolution	1
high-signal	1
histone	1
ht_sequencing	1
hybridis	1
hybridized	1
illumina	1
immune-system	1
immunohistochemical	1
immunology	1
impact	1
implementation	1
imprinting	1
imputation	1
index	1
indian-buffet-process	1
in-silico	1
integrity	1
interactis	1
interactive	1
intergenic	1
internal	1
intestine	1
introns	1
invasive	1
java	1
job	1
kinetic-proofreading	1
knockout	1
lattice	1
level	1
library	1
life	1
likelihood	1
linearization	1
lipid-membrane	1
logistic	1
log-linear	1
lung	1
lymphocytes	1
machine	1
macroscopic	1
magnitude	1
manova	1
manual	1
masking	1
mathematical-programming	1
maxent	1
mbei	1
mean	1
measurements	1
measures	1
mechanical	1
medianpolish	1
mediation	1
medical_applications	1
membrane-anchored	1
mesh	1
messengerchemistry	1
messengerchemistrymetabolism	1
meta-analysis	1
metagenomics	1
metaheuristics	1
metastatitic	1
method-validation	1
methylome	1
metropolis-hastings	1
microarrays	1
microary	1
microbe	1
microscopy	1
microtubule	1
mitosis	1
model-organism	1
modification	1
modulation	1
module-networks	1
molecular_biology	1
molecular-connectivity-map	1
molecules	1
monte-carlo	1
morphogenetic	1
morphology	1
mouse	1
movements	1
mrna-expression	1
ms	1
mulitvariate	1
multichip	1
multidimensional	1
multidisciplinary	1
multi-drug	1
multimodal	1
multisource	1
muscle	1
mutual-information	1
myocardiummetabolism	1
myth	1
naive	1
negative	1
neural	1
neural-networks	1
neuroendocrine_tumours	1
nonequilibrium	1
non-gaussian	1
normative	1
nucleosome	1
null-distribution	1
object-oriented-data-analysis	1
object-oriented-design	1
of	1
olfaction	1
oligo-capping	1
oligodt	1
oral-medicine	1
organic	1
organization-theory	1
organizing	1
oriental	1
original	1
orthologous	1
oscillators	1
oxidative	1
parabolic	1
parameter-degeneracy	1
particle	1
pharmacological	1
phenotypes	1
phosphorylation	1
physical-chemistry	1
pioneering	1
platform	1
poisson	1
polya	1
positive	1
precision	1
preconditioning	1
preprocessing	1
priming	1
primitives	1
principal	1
principles	1
probes	1
probe-selection	1
probeset	1
probe-summarization	1
productivity	1
prognostic	1
program	1
progression	1
proinflammatory	1
project	1
prokaryotes	1
proliferation	1
promoters	1
proof	1
protection	1
proteins	1
protein-translation	1
protocol	1
protocols	1
psychophysical	1
p-value	1
quantiles	1
quantum-mechanics	1
quasi	1
reactionmethods	1
reaction-systems	1
re-engineering	1
regulator	1
regulatory	1
regulatory-modules	1
reivew	1
research	1
residual-analysis	1
results	1
retention	1
ribosome	1
rna-metabolism	1
rna-regulation	1
robots	1
robustness	1
rt-pcr	1
sample-size	1
science	1
scientist	1
screening	1
scripting	1
search	1
segmentation	1
self-organization	1
semantic-similarity	1
sequenc	1
sequence-alignment	1
signal-processing	1
significance	1
similarity_measures	1
single-cell	1
single-molecule	1
single-target	1
sirna	1
sites	1
smell	1
society	1
spatial	1
spatial-scale	1
spike-in	1
stability	1
standard-care	1
standardization	1
statistical-mechanics	1
stochastic-process	1
stomach	1
streaming	1
streptococcus	1
surgery	1
symmetry	1
synteny	1
systemic	1
t7	1
t7-primer	1
tags	1
teaching	1
technical	1
termination	1
text-mining	1
theorety	1
thesis	1
time-shift	1
tissue-level	1
top-down	1
transcription-enhancers	1
transcriptionn	1
transduction	1
transitions	1
trees	1
tuberculosis	1
tumors	1
tumour-growth	1
turnover	1
uniqueness	1
universal	1
unlabelled	1
variable_selection	1
variance	1
variants	1
vertebratesgenetics	1
virtual	1
virtual_human	1
vision	1
warning	1
western	1
wikipedia	1
workflow	1
workflows	1
writing	1
yeast	1

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