ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression Export

@article{citeulike:3501974, abstract = {ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository--a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse--a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas--a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently--ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years. 10.1093/nar/gkn889}, author = {Parkinson, Helen and Kapushesky, Misha and Kolesnikov, Nikolay and Rustici, Gabriella and Shojatalab, Mohammad and Abeygunawardena, Niran and Berube, Hugo and Dylag, Miroslaw and Emam, Ibrahim and Farne, Anna and Holloway, Ele and Lukk, Margus and Malone, James and Mani, Roby and Pilicheva, Ekaterina and Rayner, Tim F. and Rezwan, Faisal and Sharma, Anjan and Williams, Eleanor and Bradley, Xiangqun Z. and Adamusiak, Tomasz and Brandizi, Marco and Burdett, Tony and Coulson, Richard and Krestyaninova, Maria and Kurnosov, Pavel and Maguire, Eamonn and Neogi, Sudeshna G. and Rocca-Serra, Philippe and Sansone, Susanna-Assunta and Sklyar, Nataliya and Zhao, Mengyao and Sarkans, Ugis and Brazma, Alvis}, citeulike-article-id = {3501974}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkn889}, citeulike-linkout-1 = {http://nar.oxfordjournals.org/content/37/suppl_1/D868.abstract}, citeulike-linkout-2 = {http://nar.oxfordjournals.org/content/37/suppl_1/D868.full.pdf}, citeulike-linkout-3 = {http://nar.oxfordjournals.org/cgi/content/abstract/37/suppl_1/D868}, citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/19015125}, citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=19015125}, day = {1}, doi = {10.1093/nar/gkn889}, issn = {1362-4962}, journal = {Nucl. Acids Res.}, keywords = {atlas, database, functional-genomics, gene-expression, microarray, repository, rna-seq}, month = {January}, number = {suppl\_1}, pages = {D868--872}, posted-at = {2009-11-05 22:40:22}, priority = {3}, title = {ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression}, url = {http://dx.doi.org/10.1093/nar/gkn889}, volume = {37}, year = {2009} }

TY - JOUR ID - citeulike:3501974 L3 - citeulike-article-id:3501974 N2 - ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository--a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse--a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas--a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently--ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years. 10.1093/nar/gkn889 IS - suppl_1 JF - Nucl. Acids Res. SN - 1362-4962 EP - 872 TI - ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression VL - 37 SP - D868 KW - atlas KW - database KW - functional-genomics KW - gene-expression KW - microarray KW - repository KW - rna-seq AU - Parkinson, Helen AU - Kapushesky, Misha AU - Kolesnikov, Nikolay AU - Rustici, Gabriella AU - Shojatalab, Mohammad AU - Abeygunawardena, Niran AU - Berube, Hugo AU - Dylag, Miroslaw AU - Emam, Ibrahim AU - Farne, Anna AU - Holloway, Ele AU - Lukk, Margus AU - Malone, James AU - Mani, Roby AU - Pilicheva, Ekaterina AU - Rayner, Tim AU - Rezwan, Faisal AU - Sharma, Anjan AU - Williams, Eleanor AU - Bradley, Xiangqun AU - Adamusiak, Tomasz AU - Brandizi, Marco AU - Burdett, Tony AU - Coulson, Richard AU - Krestyaninova, Maria AU - Kurnosov, Pavel AU - Maguire, Eamonn AU - Neogi, Sudeshna AU - Rocca-Serra, Philippe AU - Sansone, Susanna-Assunta AU - Sklyar, Nataliya AU - Zhao, Mengyao AU - Sarkans, Ugis AU - Brazma, Alvis PY - 2009/01/01/ UR - http://dx.doi.org/10.1093/nar/gkn889 ER -