bertelsen's library 919 articles Export

Ordered by to_read.

	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	Clinical bioinformatics. [My Copy] Chang Gung medical journal, Vol. 28, No. 4. (April 2005), pp. 201-211. by Phei Lang L. Chang posted to review medical health clinical bioinformatics by bertelsen on 2009-11-18 13:00:37 as
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted to methods gene-set-analysis enrichment-analysis correlation comparison by bertelsen on 2009-11-16 21:28:46 as along with 26 people and 1 group giovenko dipenps holecm lwaldron jfr ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit lptolik balicea daforerog Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
	Ontological analysis of gene expression data: current tools, limitations, and open problems [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595. by Purvesh Khatri, Sorin Draghici posted to tool review ontologies microarray gene-expression enrichment-analysis comparison analysis by bertelsen on 2009-09-27 20:19:00 as along with 18 people and 1 group darian jperkins ipark-kaist gjuggler isakemal Stew shikin diamantis Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck Bioinformatics - CRUK
	An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Min Xu, Ming-Chih C. Kao, Juan Nunez-Iglesias, Joseph R. Nevins, Mike West, Xianghong Jasmine J. Zhou posted to topological phenotype pathways network modules microarray methodology integrative integration information functional-genomics disease data-integration cancer by bertelsen on 2009-09-15 20:56:41 as along with 4 people guhjy Zephyrus cswinburne jfr
	From in vivo to in silico biology and back [My Copy] Nature, Vol. 443, No. 7111. (05 October 2006), pp. 527-533. by Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano posted to systems-biology simulations quantitative modelling invivo insilico experiment computational-biology biology by bertelsen on 2009-09-15 16:17:56 as along with 8 people remoteFuture VGreiff aalibes wnpx mmt dbikard jrbanga vietanh0
	Methods for improving simulations of biological systems: systemic computation and fractal proteins [My Copy] Journal of The Royal Society Interface, Vol. 6, No. Suppl 4. (6 August 2009), pp. S451-S466. by Peter J. Bentley posted to systems-biology systemic-computation simulations protein modelling methodology fractal computational-biology biology by bertelsen on 2009-09-05 18:10:55 as along with 1 person abhishek_tiwari
	Modelling biological complexity: a physical scientist's perspective [My Copy] Journal of The Royal Society Interface, Vol. 2, No. 4. (22 September 2005), pp. 267-280. by Peter V. Coveney, Philip W. Fowler posted to systems-biology systemic-computation simulation self-organization physical networks multi-scale modelling methodology integrative hybrid hierarchical emergent-properties computational-biology complexity biology by bertelsen on 2009-09-04 20:25:36 as along with 6 people jonathancooper Scis0000002 PaulSherwood6 paulschlesinger jjray danscott
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to systems-biology review regulation network models integration inference dynamic data-integration by bertelsen on 2009-09-03 16:44:18 as along with 7 people nicholasflann antonkratz greg guhjy mjoach sjung allysonlister
	puma: a Bioconductor package for propagating uncertainty in microarray analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 211. by Richard Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil Lawrence, Magnus Rattray posted to uncertainty software microarray bioconductor bayesian analysis by bertelsen on 2009-09-02 21:48:47 as along with 8 people and 1 group zufar rdiaz Stew guhjy lwaldron brianb barriot neils Bioinformatics - CRUK
	Bayesian inference for differential equations [My Copy] Theor. Comput. Sci., Vol. 408, No. 1. (2008), pp. 4-16. by Mark Girolami posted to uncertainty systems-biology pathways nonlinear dynamic differential-equation biochemical-systems-theory biochemical baysian by bertelsen on 2009-09-02 17:38:49 as
	Investigating the two-moment characterisation of subcellular biochemical networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 3. (07 October 2009), pp. 340-352. by Mukhtar Ullah, Olaf Wolkenhauer posted to systems-biology subcellular stochastic probabilistic ode noise networks chemical-master-equation chemical biochemical approximation by bertelsen on 2009-09-01 20:38:00 as along with 2 people jjray tinatoni
	Mechanistic simulations of inflammation: Current state and future prospects [My Copy] Mathematical Biosciences, Vol. 217, No. 1. (January 2009), pp. 1-10. by Y. Vodovotz, G. Constantine, J. Rubin, M. Csete, E. Voit, G. An posted to translational-medicine systems-biology systemic-computation stochastic simulation review personalized-medicine modeling mechanistic mathematical inflammation differential-equation biochemical-systems-theory agent-based by bertelsen on 2009-09-01 16:14:45 as
	A systems-theoretical framework for health and disease: Inflammation and preconditioning from an abstract modeling point of view [My Copy] Mathematical Biosciences, Vol. 217, No. 1. (January 2009), pp. 11-18. by E. Voit posted to theory systems-biology s-system preconditioning personalized-medicine modeling inflammation health framework disease biochemical-systems-theory by bertelsen on 2009-09-01 16:03:19 as
	Controllability of non-linear biochemical systems [My Copy] Mathematical Biosciences, Vol. 196, No. 1. (July 2005), pp. 99-123. by A. Ervadiradhakrishnan, E. Voit posted to systems-biology simulation s-system prediction pathway nonlinear networks models mathematical biochemical-systems-theory biochemical analysis by bertelsen on 2009-08-31 23:41:57 as
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to visualization tool systems-biology standard software regulation networks languages interactis graphical-modelling biochemical by bertelsen on 2009-08-31 15:39:29 as along with 38 people and 3 groups singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Multiscale agent-based cancer modeling [My Copy] Journal of Mathematical Biology, Vol. 58, No. 4. (1 April 2009), pp. 545-559. by Le Zhang, Zhihui Wang, Jonathan A. Sagotsky, Thomas S. Deisboeck posted to tumor systems-biology systemic-computation simulation network multi-scale modeling integrative insilico cancer agent-based by bertelsen on 2009-08-27 13:14:53 as along with 1 person frohike
	Dynamic computational modeling in the search for better breast cancer drug therapy. [My Copy] Pharmacogenomics, Vol. 8, No. 12. (December 2007), pp. 1757-1761. by Dana Faratian, Stuart L. Moodie, David J. Harrison, Igor Goryanin posted to therapy pathology modeling dynamic drug computational cancer by bertelsen on 2009-08-27 11:49:58 as
	Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics [My Copy] PLoS ONE, Vol. 4, No. 2. (19 February 2009), e4523. by Joseph E. Lucas, Carlos M. Carvalho, Julia L. Chen, Jen-Tsan Chi, Mike West posted to biomarker cancer cross-study factor-analysis gene-expression genomics invitro invivo microarray by bertelsen on 2009-07-24 20:01:11 as along with 4 people zufar jfr frohike jmstat
	Biological knowledge management: the emerging role of the Semantic Web technologies [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 392-407. by Erick Antezana, Martin Kuiper, Vladimir Mironov posted to bioinformatics biology integration knowledge-based management ontology review semantic-web systems-biology by bertelsen on 2009-07-22 23:30:06 as along with 15 people jfr jmuhlich guhjy artaban421 cmzmasek pharmdoc lmichan kshameer sobolevnrm dansullivanblk allysonlister mikel_egana dullhunk fgibson druvus
	Noise in gene expression: origins, consequences, and control. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013. by Jonathan M. Raser, Erin K. O'Shea posted to control gene-expression noise review stochastic by bertelsen on 2009-07-04 20:46:04 as along with 21 people and 2 groups pkm kentz Zephyrus guhjy thomaskelder inesdesantiago ddcttrl rklancer monod dayjm xico nirfriedman koller mhucka margaritis suizan shikin dylanwalker kagibbs klo bpcusack WetBiology GeneGo
	Stochasticity in gene expression: from theories to phenotypes [My Copy] Nat Rev Genet, Vol. 6, No. 6. (10 May 2005), pp. 451-464. by Mads Kaern, Timothy C. Elston, William J. Blake, James J. Collins posted to theory systems-biology stochastic-resonance stochastic review phenotype heterogeneity gene-expression environment disease differentiation development cell by bertelsen on 2009-07-04 20:41:48 as along with 8 people pkm boko4ikameto bcondon ccots wnpx tabu balabu timflutre
	Enterococcus faecalis infection induces DNA damage and activates inflammatory immune responses in human gastric epithelial cells [My Copy] (March 2009) by Jesper A. Strickertsson edited by Adrian P. Harrison, Lennart Friis-Hansen posted to cancer epithelial gastric human infection thesis by bertelsen on 2009-06-17 21:17:21 as
	What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000348. by Mark D. Mcdonnell, Derek Abbott posted to stochastic-resonance stochastic signal-processing resonance noise neuroscience biology by bertelsen on 2009-06-16 12:47:31 as along with 15 people Sergey_gerbek iml sylvain_chevallier fccoelho thegoose Gorzomagnificent reyez bayesian trfield flips kentsis fgibson jjray marekrud GeeSharpMinor
	A framework for gene expression analysis [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 191-197. by Andreas W. Schreiber, Ute Baumann posted to analysis framework gene-expression perturbation systems-biology by bertelsen on 2009-06-12 19:37:32 as along with 1 person bedo
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei Keat K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted to analysis comparative gene microarray networks normalization reverse-engineering by bertelsen on 2009-06-11 23:38:22 as along with 12 people jperkins jeremymiller lawraga frohike huiminC dubhelix giovenko pengchy aramesh2 shigepong ghattem heliopais
	Pattern Recognition and Machine Learning (Information Science and Statistics) [My Copy] (01 October 2007) by Christopher M. Bishop posted to book information machine-learning pattern-recognition probability by bertelsen on 2009-06-06 19:36:14 as along with 53 people and 6 groups pjmaybank emailhy pingmei bklynbam gavin1332 ecome psychorav mircea longtop resilla ocs sugarexpletive bgibson tkf mthomure emre haiyeong h-chi brian sbarthelme bayes mboehmer paulclinger thefillm stibor ppeeling yaroslavvb sdvillal nojhan gkvas paulinus ajylha helsley hawkes zeppe poluxmoon librain kohei-h brianmc napvasconcelos teesid robotact Hoertnagl matjes eddymier delip markusd filippone singhsh ssomani pprett rwilliamson Dukhat Tracking Methods EvolutionaryComputation Metaheuristics Optimization contact-id MuSAMA
	Simulation of truncated normal variables [My Copy] Statistics and Computing, Vol. 5, No. 2. (1 June 1995), pp. 121-125. by Christian P. Robert posted to algorithms gaussian normal simulation truncated by bertelsen on 2009-06-01 14:58:09 as along with 1 person FLegendre
	In-vitro to In-vivo factor profiling in expression genomics [My Copy] In Bayesian Modelling in Bioinformatics (2009) by J. E. Lucas, C. M. Carvalho, D. Merl, M. West edited by D. Dey, S. Ghosh, B. Mallick posted to analysis cancer factor-analysis gene-expression profiling by bertelsen on 2009-06-01 01:15:11 as
	Factor Analysis [My Copy] Handbook of Statistics, Vol. 26 (2006), pp. 257-296. by H. Yanai, M. Ichikawa posted to factor-analysis by bertelsen on 2009-05-31 19:42:53 as
	DAVID gene ID conversion tool. [My Copy] Bioinformation, Vol. 2, No. 10. (2008), pp. 428-430. by Da Wei a. . W. Huang, Brad T. Sherman, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki posted to bioinformatics conversion databases identification software tool by bertelsen on 2009-05-18 15:07:28 as along with 3 people jfr daforerog guhjy
	Ontologies: Formalising biological knowledge for bioinformatics [My Copy] BioEssays, Vol. 25, No. 5. (2003), pp. 501-506. by Jonathan Bard posted to bioinformatics knowledge-based ontology structure by bertelsen on 2009-04-24 13:35:31 as
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to comparison enrichment-analysis review summary survey tool by bertelsen on 2009-03-12 15:26:42 as along with 44 people and 2 groups darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz Stew inesdesantiago heliopais AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell Bioinformatics - CRUK ConklinLab
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to analysis chip-seq genome promoter transcription-factor by bertelsen on 2009-03-10 11:08:23 as along with 19 people and 1 group jwfoley ewilban1 nklee stajich smiddha clearbluespring WanderingAengus polivares ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh Mycology
	DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis [My Copy] BMC Bioinformatics, Vol. 8 (02 November 2007), 426. by Brad T. Sherman, Da W. Huang, Qina Tan, et al.Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W. Baseler, Clifford H. Lane, Richard A. Lempicki posted to analysis annotation database functional-genomics high-throughput by bertelsen on 2009-03-09 13:43:03 as along with 6 people and 1 group daforerog guhjy jfr ealloza barriot hpaces BioinfoCIPF
	DAVID: Database for Annotation, Visualization, and Integrated Discovery [My Copy] Genome Biology, Vol. 4, No. 5. (2003), P3. by Glynn Dennis, Brad Sherman, Douglas Hosack, et al.Jun Yang, Wei Gao, H. Clifford Lane, Richard Lempicki posted to annotation database discovery functional-genomics integrating visualization by bertelsen on 2009-03-09 12:47:32 as along with 6 people ipark-kaist VGreiff capitall incovoma beete guhjy
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to annotation gene go ontology review by bertelsen on 2009-03-03 21:50:12 as along with 40 people and 3 groups singhsh epigenetics davidmam Thaverkamp druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	Functional and evolutionary inference in gene networks: does topology matter? [My Copy] Genetica, Vol. 129, No. 1. (January 2007), pp. 83-103. by Siegal, Mark, Promislow, Daniel, Bergman, Aviv posted to evolution functional-genomics gene networks topological by bertelsen on 2009-02-18 20:11:01 as along with 1 person kentz
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to expression gene-expression high-dimensional protein statistics by bertelsen on 2009-02-18 19:57:30 as along with 17 people and 1 group Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang ptrobajo jfr guhjy tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
	Network component analysis: Reconstruction of regulatory signals in biological systems [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15522-15527. by James C. Liao, Riccardo Boscolo, Young-Lyeol Yang, Linh M. Tran, Chiara Sabatti, Vwani P. Roychowdhury posted to high-dimensional ica network regulation signals by bertelsen on 2009-02-18 19:46:39 as along with 2 people davebridges arne
	Knowledge-guided multi-scale independent component analysis for biomarker identification [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Li Chen, Jianhua Xuan, Chen Wang, et al.Ie M. Shih, Yue Wang, Zhen Zhang, Eric Hoffman, Robert Clarke posted to analysis biomarker gene-expression ica microarray motif networks regulation by bertelsen on 2009-02-18 11:47:00 as along with 4 people jfr guhjy xtizon GeeSharpMinor
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted to bioinformatics feature review selection by bertelsen on 2009-02-15 01:21:52 as along with 27 people and 1 group Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil VGreiff rsantana druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum vietanh0 eacosta aaalxy srp33 Bioinformatics
	A review of independent component analysis application to microarray gene expression data. [My Copy] BioTechniques, Vol. 45, No. 5. (November 2008), pp. 501-520. by W. Kong, C. Vanderburg, H. Gunshin, J. Rogers, X. Huang posted to gene-expression ica microarray review by bertelsen on 2009-02-14 20:37:26 as along with 2 people jfr guhjy
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to alternative gene global human sequencing splicing transcriptome by bertelsen on 2008-12-05 15:39:43 as along with 28 people and 2 groups hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Bayesian nonparametric latent feature models [My Copy] In Bayesian Statistics 8 (June 2006), pp. 201-225. by Zoubin Ghahramani, T. L. Griffiths, Peter Sollich edited by J. M. Bernardo, M. J. Bayarri, J. O. Berger, et al.A. P. Dawid, D. Heckerman, A. F. M. Smith, M. West posted to bayesian feature latent models nonparametric by bertelsen on 2008-12-01 21:13:22 as along with 2 people markusd jsr
	Infinite Sparse Factor Analysis and Infinite Independent Components Analysis. [My Copy] In 7th International Conference on Independent Component Analysis and Signal Separation (ICA 2007) (2007) by D. Knowles, Z. Ghahramani posted to analysis bayesian ica nonparametric sparse by bertelsen on 2008-11-24 15:39:23 as
	High-Dimensional Sparse Factor Modelling: Applications in Gene Expression Genomics [My Copy] Journal of the American Statistical Association, Vol. 103, No. 484. (December 2008), pp. 1438-1456. by Carlos M. Carvalho, Jeffrey Chang, Joseph E. Lucas, Joseph R. Nevins, Quanli Wang, Mike West posted to gene-expression genomics high-dimensional modelling sparse by bertelsen on 2008-11-24 15:33:34 as
	[Metastases of unknown origin--principles of diagnosis and treatment] [My Copy] Medicinski pregled, Vol. 60, No. 1-2. (b 2007), pp. 29-36. by D. Petrović, L. Muzikravić, D. Jovanović posted to cancer diagnostic metastatic review treatment upt by bertelsen on 2008-11-05 16:16:48 as
	The Bayesian Lasso [My Copy] Journal of the American Statistical Association, Vol. 103, No. 482. (June 2008), pp. 681-686. by Park, Trevor, Casella, George posted to bayesian lasso regression by bertelsen on 2008-09-23 14:12:37 as along with 1 person innersmile
	Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2395-2405. by Hinanit Koltai, Carmiya Weingarten-Baror posted to hybridization microarray review specificity by bertelsen on 2008-09-17 22:13:44 as along with 3 people guhjy jfr ptrobajo

Note: You may cite this page as: http://www.citeulike.org/user/bertelsen/order/to_read

Result page: 1 2 3 4 5 6 7 8 9 10 Next

microarray	222
analysis	129
review	123
gene-expression	122
systems-biology	95
bayesian	92
cancer	78
expression	59
networks	57
affymetrix	48
gene	45
functional-genomics	44
software	44
annotation	43
biology	42
tool	42
model	40
regulation	38
network	37
modelling	36
data	34
bioinformatics	31
disease	29
modeling	29
pathway	28
genechip	27
models	27
rna	27
polyadenylation	26
human	25
clustering	24
drug-discovery	24
multi-scale	24
oligonucleotide	24
gene-regulation	23
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
molecular	20
mrna	20
probability	20
transcription	20
differential	19
dynamic	19
factor-analysis	19
database	18
integrative	18
probe-level	18
stochastic	18
chemical	17
mathematical	17
probabilistic	17
simulation	17
dirichlet-process	16
function	16
integration	16
kinetic	16
nonparametric	16
comparison	15
computational	15
drug	15
experiment	15
genome	15
genomics	15
high-throughput	15
r	15
sampling	15
sequence	15
statistical	15
structure	15
theory	15
algorithm	14
enrichment-analysis	14
gastric	14
noise	14
normalization	14
prediction	14
python	14
regression	14
array	13
biochemical-systems-theory	13
bioconductor	13
classification	13
control	13
framework	13
go	13
interpretation	13
mirna	13
personalized-medicine	13
phenotype	13
protein	13
statistics	13
therapy	13
algorithms	12
clinical	12
complexity	12
hierarchical	12
latent	12
mechanism	12
modules	12
pathways	12
promoter	12
transcriptome	12
computational-biology	11
distribution	11
evolution	11
non-protein-coding	11
oncogenesis	11
quality	11
sparse	11
tumour	11
alternative	10
genetic	10
integrating	10
mcmc	10
mixture	10
modular	10
proteomics	10
quantitative	10
systems	10
test	10
uncertainty	10
3-utr	9
biomedical	9
biophysics	9
cell-biology	9
data-integration	9
design	9
diagnostic	9
discovery	9
dna	9
hypothesis	9
information	9
interactions	9
large-scale	9
machine-learning	9
method	9
methodology	9
multiple	9
quality-control	9
selection	9
s-system	9
therapeutic	9
transcription-factor	9
visualization	9
background	8
experimental-design	8
heterogeneity	8
hybridization	8
ica	8
insilico	8
linear	8
measure	8
methods	8
overview	8
rnai	8
synthetic-biology	8
systemic-computation	8
time-series	8
transcripts	8
utr	8
agent-based	7
binary	7
development	7
drug-target	7
emergent-properties	7
infection	7
invivo	7
mapping	7
multivariate	7
organization	7
pathology	7
physiology	7
rats	7
specificity	7
tiling	7
time-course	7
translation	7
webservices	7
cdna	6
chip-chip	6
computation	6
computing	6
databases	6
epigenetic	6
evolutionary-computation	6
feature	6
genetics	6
graphs	6
mammalian	6
matrix-factorization	6
metabolomics	6
nonlinear	6
pre-processing	6
primary	6
processes	6
profiles	6
reactions	6
reverse-engineering	6
rna-seq	6
scientific	6
sequencing	6
summary	6
thermodynamics	6
tumor	6
upt	6
apoptosis	5
application	5
baysian	5
bias	5
binfbib	5
biomarker	5
book	5
cell-cycle	5
comparative	5
correction	5
dependence	5
encode	5
environment	5
error	5
eukaryotic	5
false	5
gaussian	5
gene-function	5
genome-wide	5
gibbs	5
identification	5
import	5
invitro	5
kidney	5
localization	5
measurement	5
medical	5
membrane	5
metabolic-network	5
ncrna	5
nmd	5
nonsense-mediated	5
normal	5
ontologies	5
optimization	5
pathway-analysis	5
pattern	5
pca	5
physical	5
prior	5
process	5
profiling	5
profilingmethods	5
protein-expression	5
quality-assessment	5
quantitative-trait-loci	5
sensitivity	5
signal	5
simulations	5
splicing	5
synthesis	5
time	5
topological	5
treatment	5
truncated	5
unknown	5
variation	5
variational	5
5-utr	4
animals	4
approximation	4
biomolecular	4
cage	4
cell	4
circuits	4
co-expression	4
co-regulation	4
decay	4
diversity	4
dynamics	4
endolymphatic-sac	4
entropy	4
estimation	4
exons	4
exploratory	4
filtering	4
gastric-cancer-group	4
global	4
graphical-modelling	4
grid	4
guide	4
high-dimensional	4
hybrid	4
inflammation	4
inhibitors	4
inner-ear	4
interface	4
knowledge-based	4
literature	4
local	4
map	4
mechanistic	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pharmacogenomic	4
philosophy	4
physics	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
combinatorial	3
component	3
correlation	3
dataset	3
differential-equation	3
differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
enzyme	3
evaluation	3
exchangeability	3
fdr	3
gene-circuits	3
generalized	3
genes	3
genotyping	3
histological	3
hmm	3
humans	3
identifiability	3
independence	3
interference	3
introduction	3
languages	3
learning	3
management	3
medicine	3
metastatic	3
model-selection	3
modularity	3
multinomial	3
natural	3
nonnegative	3
nuclear	3
parasitology	3
pattern-recognition	3
performance	3
perturbation	3
polymerase	3
random	3
ranking	3
regulators	3
renormalization-group-analysis	3
repository	3
reproducibility	3
resonance	3
resource	3
robust	3
signaling-system	3
signal-transduction	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
approximations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
fractal	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
homologous	2
image-processing	2
immune-system	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
lung	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
molecular-connectivity-map	2
multi-target	2
mutations	2
neuroscience	2
nonequilibrium	2
non-specific	2
nucleic	2
numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2
present_absent_call	2
primer	2
probesgenetics	2
probit	2
programming	2
properties	2
proteome	2
protozoan	2
rate-law	2
reasoning	2
rma	2
sage	2
saturation	2
semantic-web	2
sequential	2
set	2
small	2
space	2
stem-cells	2
stochasticity	2
stress	2
subcellular	2
target	2
t-cell	2
threshold	2
tissue-level	2
translational-medicine	2
t-test	2
two-color	2
user-computer	2
variational-inference	2
vector	2
2d	1
3d	1
454	1
5--3	1
abstracts	1
across	1
adenocarcinomas	1
agilent	1
aging	1
algebra	1
allometric	1
alphabet	1
alternate	1
analysisinstrumentationmethods	1
analytical	1
and	1
animal-communication	1
anlaysis	1
annotations	1
antisense	1
antiviral	1
applied	1
approximat	1
aquaporins	1
architecture	1
articles	1
artifacts	1
assay	1
atlas	1
atmosphere	1
atom	1
averaging	1
basic	1
bayes-theorem	1
bifurcation	1
bilayer	1
binding	1
binomial	1
bioactive	1
biomechanical	1
biomedicine	1
biophysic	1
biosphere	1
black-box	1
brain	1
breast_cancer	1
bridges	1
caffeine	1
calculus	1
cancer_therapy	1
caner	1
canonical	1
cap	1
carcinogenesis	1
carcinoid	1
carcinoma	1
causal	1
cds	1
c-elegans	1
cell-growth	1
cell-interaction	1
cell-movement	1
cellular-automata	1
cellular-networks	1
cellular-response	1
cell-wall	1
cgh	1
chain	1
chemistry	1
chemotactic	1
chicken	1
chip	1
chromosomal-localization	1
chromosomes	1
civil	1
cleavage	1
climate	1
cloud-computing	1
clouds	1
cluster	1
coarse-grained	1
comment	1
community	1
comparative-genomic-hybridization	1
compartments	1
concepts	1
conditional-independence	1
conference	1
confounding	1
conserved	1
consistency	1
content-management-system	1
contrast	1
conversion	1
cooperativity	1
coordination	1
co-regulated	1
course	1
critical	1
curvature	1
curves	1
cystic	1
cystogenesis	1
cytokines	1
cytomics	1
cytoscape	1
cytoskeleton	1
cytosol	1
dag	1
decomposition	1
density-estimation	1
developmental	1
diagnosis	1
diagram	1
dicer	1
dilution	1
dimension-reduction	1
discover	1
discretization	1
discrimination	1
dispersion	1
dissection	1
divergence	1
division	1
dominance	1
drug-delivery	1
drug-resistant	1
dyadic	1
dye	1
egg	1
electrophoresis	1
embryo	1
empirical-bayes	1
energy	1
enterococcus	1
epg-bodies	1
epidemic	1
epidemiology	1
epidermal_growth_factor	1
epigenome	1
equilibrium	1
equipment	1
e-science	1
estimates	1
etiology	1
european	1
examples	1
expectation-maximization	1
exploration	1
exponential	1
exponential-models	1
factors	1
factorsgenetics	1
failure	1
family	1
fat-tailed	1
feature-level	1
field-theory	1
fire	1
fluctuation	1
fluorescent	1
fold-change	1
force-field	1
forest	1
formal	1
frequency_modulation	1
frequentist	1
functional_data_analysis	1
gain-control	1
gapdh	1
gastrin	1
gcrma	1
gel	1
gene-design	1
gene-modules	1
gene-networks	1
generality	1
generator	1
gene-set-analysis	1
gene-silencing	1
genetic_engineering	1
genome-assembly	1
geometry	1
glycan	1
glycobiology	1
glycoprotein	1
goodness-of-fit	1
gram-positive	1
h1n1	1
heterologous	1
heuristics	1
high-precision	1
high-resolution	1
high-signal	1
histone	1
ht_sequencing	1
hybridis	1
hybridized	1
hypertension	1
illumina	1
imaging	1
immunohistochemical	1
immunology	1
impact	1
implementation	1
imprinting	1
imputation	1
index	1
indian-buffet-process	1
in-silico	1
integrity	1
interactis	1
interactive	1
intergenic	1
internal	1
intestine	1
intracellular	1
introns	1
invasive	1
java	1
job	1
kinetic-proofreading	1
kinetics	1
knockout	1
lattice	1
level	1
library	1
life	1
likelihood	1
linearization	1
lipid-membrane	1
logistic	1
log-linear	1
lymphocytes	1
machine	1
macroscopic	1
magnitude	1
manova	1
manual	1
masking	1
mathematical-programming	1
maxent	1
mbei	1
mean	1
measurements	1
measures	1
mechanical	1
medianpolish	1
mediation	1
medical_applications	1
membrane-anchored	1
mesh	1
messengerchemistry	1
messengerchemistrymetabolism	1
meta-analysis	1
metagenomics	1
metaheuristics	1
metastatitic	1
method-validation	1
methylome	1
metric	1
metropolis-hastings	1
microarrays	1
microary	1
microbe	1
microscopy	1
microtubule	1
mitosis	1
model-organism	1
modification	1
modulation	1
module-networks	1
molecular_biology	1
molecules	1
monte-carlo	1
morphogenetic	1
morphology	1
mouse	1
movements	1
mrna-expression	1
ms	1
mulitvariate	1
multichip	1
multidimensional	1
multidisciplinary	1
multi-drug	1
multimodal	1
multisource	1
muscle	1
mutual-information	1
myocardiummetabolism	1
myth	1
naive	1
negative	1
neural	1
neural-networks	1
neuroendocrine_tumours	1
non-gaussian	1
normative	1
nucleosome	1
null-distribution	1
object-oriented-data-analysis	1
object-oriented-design	1
of	1
olfaction	1
oligo-capping	1
oligodt	1
oncogenes	1
oral-medicine	1
organic	1
organization-theory	1
organizing	1
organogenesis	1
oriental	1
original	1
orthologous	1
oscillators	1
oxidative	1
parabolic	1
parameter-degeneracy	1
particle	1
pharmacological	1
phenotypes	1
phosphorylation	1
physical-chemistry	1
physico_chemical	1
pioneering	1
platform	1
poisson	1
polya	1
positive	1
precision	1
preconditioning	1
priming	1
primitives	1
principal	1
principles	1
probes	1
probe-selection	1
probeset	1
probe-summarization	1
productivity	1
prognostic	1
program	1
progression	1
proinflammatory	1
project	1
prokaryotes	1
proliferation	1
promoters	1
proof	1
protection	1
proteins	1
protein-translation	1
proteomic	1
protocol	1
protocols	1
psychophysical	1
p-value	1
quantiles	1
quantum-mechanics	1
quasi	1
reactionmethods	1
reaction-systems	1
re-engineering	1
regulator	1
regulatory	1
regulatory-modules	1
reivew	1
research	1
residual-analysis	1
results	1
retention	1
ribosome	1
rna-metabolism	1
rna-regulation	1
robots	1
robustness	1
rt-pcr	1
sample-size	1
scale-free	1
science	1
scientist	1
screening	1
scripting	1
search	1
segmentation	1
self-organization	1
semantic-similarity	1
sequenc	1
sequence-alignment	1
signaling-pathway	1
signal-processing	1
significance	1
similarity_measures	1
single-cell	1
single-molecule	1
single-target	1
sirna	1
sites	1
smell	1
society	1
spatial	1
spatial-scale	1
spatio-temporal	1
spike-in	1
stability	1
standard-care	1
standardization	1
statistical-mechanics	1
stochastic-process	1
stomach	1
streaming	1
streptococcus	1
surgery	1
symmetry	1
synteny	1
systemic	1
t7	1
t7-primer	1
tags	1
teaching	1
technical	1
termination	1
text-mining	1
theorety	1
thesis	1
time-shift	1
top-down	1
transcription-enhancers	1
transcriptionn	1
transduction	1
transitions	1
trees	1
tuberculosis	1
tumors	1
tumour-growth	1
tumour-suppressor	1
turnover	1
uniqueness	1
universal	1
unlabelled	1
variable_selection	1
variance	1
variants	1
vascular	1
vertebratesgenetics	1
viral-infection	1
virtual	1
virtual_human	1
vision	1
warning	1
western	1
wikipedia	1
workflow	1
workflows	1
writing	1
yeast	1

bertelsen's library 919 articles Export

bertelsen's tags