bertelsen's annotation [44 articles] Export

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	The Gene Wiki: community intelligence applied to human gene annotation [My Copy] Nucl. Acids Res. (15 September 2009), gkp760. by Jon W. Huss, Pierre Lindenbaum, Michael Martone, et al.Donabel Roberts, Angel Pizarro, Faramarz Valafar, John B. Hogenesch, Andrew I. Su posted to wikipedia human gene community annotation by bertelsen on 2009-11-25 14:17:39 as along with 12 people and 2 groups operon fgibson nlapalu daforerog jobadge jgill thomaskelder timhubbard VGreiff druvus ppgardne dullhunk eLearning in Leicester Journal picks
	OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Pieter Bt B. Neerincx, Han Rauwerda, Haisheng Nie, Martien Am A. Groenen, Timo M. Breit, Jack Am A. Leunissen posted to webservices tool target specificity pipelines oligonucleotide microarray high-throughput annotation by bertelsen on 2009-10-28 12:07:39 as
	From Genotype to Phenotype: Systems Biology Meets Natural Variation [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 495-497. by Philip N. Benfey, Thomas Mitchell-Olds posted to gastric-cancer-group variation systems-biology phenotype natural genotype functional-genomics annotation by bertelsen on 2009-10-03 22:51:36 as along with 18 people and 5 groups balicea maren Keywan slevy03 Zephyrus natstreet stringertheory applebyb zwang bootsy echinotrix ArtemPankin adacier guhjy ashko kaniko brant daed Ondex SABR - Bioenergy project VUMCGenomics Roswell Cancer Crosstalk R.E.A.D Khavkin's lab
	Linking microarray reporters with protein functions. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Stan Gaj, Arie van Erk, Rachel I. van Haaften, Chris T. Evelo posted to microarray functional-genomics annotation analysis by bertelsen on 2009-09-29 08:33:09 as along with 1 person jayster4
	Applications of a rat multiple tissue gene expression data set. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 742-749. by John R. Walker, Andrew I. Su, David W. Self, et al.John B. Hogenesch, Hilmar Lapp, Rainer Maier, Daniel Hoyer, Graeme Bilbe posted to tissue-specific rats quantitative-trait-loci phenotype microarray gene-expression gene functional-genomics co-expression annotation by bertelsen on 2009-09-28 13:52:43 as along with 2 people grahamc eukfn
	Methods for interpreting lists of affected genes obtained in a DNA microarray experiment. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Jakob Hedegaard, Cristina Arce, Silvio Bicciato, et al.Agnès Bonnet, Bart Buitenhuis, Melania Collado-Romero, Lene N. Conley, Magali Sancristobal, Francesco Ferrari, Juan J. Garrido, Martien Am A. Groenen, Henrik Hornshøj, Ina Hulsegge, Li Jiang, Angeles Jiménez-Marín, Arun Kommadath, Sandrine Lagarrigue, Jack Am A. Leunissen, Laurence Liaubet, Pieter Bt B. Neerincx, Haisheng Nie, Jan van der Poel, Dennis Prickett, María Ramirez-Boo, Johanna Mj M. Rebel, Christèle Robert-Granié, Axel Skarman, Mari A. Smits, Peter Sørensen, Gwenola Tosser-Klopp, Michael Watson posted to microarray interpretation gene-expression enrichment-analysis biology annotation by bertelsen on 2009-09-27 19:53:52 as
	Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Pieter Bt B. Neerincx, Pierrot Casel, Dennis Prickett, et al.Haisheng Nie, Michael Watson, Jack Am A. Leunissen, Martien Am A. Groenen, Christophe Klopp posted to probe-level pipelines microarray comparison annotation affymetrix by bertelsen on 2009-09-27 18:24:49 as
	The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (3 July 2009), e1000431. by The Reference Genome Group of the Gene Ontology Consortium posted to ontology gene-function functional-genomics framework annotation by bertelsen on 2009-09-15 19:28:24 as along with 20 people and 2 groups Zephyrus rdiaz ptrobajo fgibson NickFurnham guhjy VGreiff cabbagesofdoom Keywan druvus natstreet gjuggler biomcgary polivares tfuji dswan kiekyon TRHvidsten djkt daforerog Bioinformatics Journal picks
	A Truly Broad View of Gene Expression Spotlights Evolution and Diversity [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e18. posted to gene-expression functional-genomics evolution diversity annotation by bertelsen on 2009-09-09 14:55:34 as
	Similarities and Differences in Genome-Wide Expression Data of Six Organisms [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e9. by Sven Bergmann, Jan Ihmels, Naama Barkai posted to sequence microarray genome-wide gene-expression functional-genomics comparative annotation by bertelsen on 2009-09-09 14:52:38 as along with 10 people and 3 groups thegoose2 floatingpoint roys tharris dragonrez Ayest RMGraze marcius koller jeremymiller C. elegans / WormBase BioinfoCIPF SGU-CIPF
	The proteome: structure, function and evolution. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 441-451. by Keiran Fleming, Lawrence A. Kelley, Suhail A. Islam, et al.Robert M. MacCallum, Arne Muller, Florencio Pazos, Michael J. Sternberg posted to structure sequence review proteome protein ontology model function annotation by bertelsen on 2009-09-06 00:29:42 as along with 1 person yuslinaz
	Genome and proteome annotation: organization, interpretation and integration [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 31. (6 February 2009), pp. 129-147. by Gabrielle A. Reeves, David Talavera, Janet M. Thornton posted to proteome organization interpretation integration high-throughput genome data-integration data bioinformatics annotation by bertelsen on 2009-09-05 21:20:29 as along with 6 people operon richardbickerton Thaverkamp druvus dullhunk guhjy
	Minimum information requested in the annotation of biochemical models (MIRIAM) [My Copy] Nature Biotechnology, Vol. 23, No. 12. (06 December 2005), pp. 1509-1515. by Nicolas L. Novere, Andrew Finney, Michael Hucka, et al.Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep, Hugh D. Spence, Barry L. Wanner posted to models information biochemical annotation by bertelsen on 2009-09-01 17:47:43 as along with 16 people and 2 groups mtaschuk perkeo irenas jmuhlich moonhouse schwartzjmc tjtaylor Vincent_Rouilly allysonlister michaelbarton subhacom dullhunk dagmar lenov pmendes leilaperie dIEMoSIRIS compneur
	Studying chromosome-wide transcriptional networks: new insights into disease? [My Copy] Genome medicine, Vol. 1, No. 5. (11 May 2009) by Philipp Kapranov posted to annotation chromosome-wide disease exons network transcription by bertelsen on 2009-07-22 22:01:50 as along with 2 people guhjy daforerog
	Nucleic Acids Research annual Web Server Issue in 2009 [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W1-2. by Gary Benson posted to analysis annotation bioinformatics functional-genomics metagenomics network pathway review survey text-mining web webservices by bertelsen on 2009-07-20 14:20:44 as along with 2 people balajis leemond31
	BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006), pp. W472-476. by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, et al.David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo posted to annotation functional-genomics software systems-biology by bertelsen on 2009-07-20 14:15:45 as along with 5 people and 2 groups daforerog rschulz marcius ealloza Garamonfok BioinfoCIPF SGU-CIPF
	A-MADMAN: annotation-based microarray data meta-analysis tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 June 2009), 201. by Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, et al.Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi posted to annotation gene-expression large-scale meta-analysis microarray normalization software tool by bertelsen on 2009-07-08 11:59:05 as along with 6 people and 1 group daforerog ptrobajo dswan guhjy shikin neils Bioinformatics
	Modeling annotated data [My Copy] In SIGIR '03: Proceedings of the 26th annual international ACM SIGIR conference on Research and development in informaion retrieval (2003), pp. 127-134. by David M. Blei, Michael I. Jordan posted to annotation data dirichlet hierarchical latent modeling probabilistic by bertelsen on 2009-06-05 18:35:46 as along with 9 people and 4 groups maximzhao erain eddymier mehrbod rayzhang ldietz jekky Mohan-S cbosuna CMU-HCII Blog_and_Wiki_Research automatic_summarization ASR
	Annotation-Modules: A tool for finding significant combinations of multisource annotations for gene lists. [My Copy] Bioinformatics (Oxford, England) (8 May 2008) by Michael Hackenberg, Rune Matthiesen posted to annotation functional-genomics modules multisource tool by bertelsen on 2009-03-12 15:48:21 as along with 4 people and 1 group jfr guhjy barriot sobolevnrm baker-group
	Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3674-3676. by Ana Conesa, Stefan Gotz, Juan M. Garcia-Gomez, Javier Terol, Manuel Talon, Montserrat Robles posted to alignment annotation go ontology sequence software tool by bertelsen on 2009-03-12 15:24:27 as along with 10 people seb1 Thaverkamp karinlag nlapalu fbristow Garamonfok sgoetz talponer imelda aconesa
	ProbCD: enrichment analysis accounting for categorization uncertainty [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Ricardo Vencio, Ilya Shmulevich posted to annotation enrichment-analysis go microarray ontology probabilistic software uncertainty by bertelsen on 2009-03-12 14:23:56 as along with 4 people and 1 group druvus sobolevnrm heliopais barriot baker-group
	DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis [My Copy] BMC Bioinformatics, Vol. 8 (02 November 2007), 426. by Brad T. Sherman, Da W. Huang, Qina Tan, et al.Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W. Baseler, Clifford H. Lane, Richard A. Lempicki posted to analysis annotation database functional-genomics high-throughput by bertelsen on 2009-03-09 13:43:03 as along with 6 people and 1 group daforerog guhjy jfr ealloza barriot hpaces BioinfoCIPF
	The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists [My Copy] Genome Biology, Vol. 8, No. 9. (04 September 2007), R183. by Da W. Huang, Brad T. Sherman, Qina Tan, et al.Jack R. Collins, Gregory W. Alvord, Jean Roayaei, Robert Stephens, Michael W. Baseler, Clifford H. Lane, Richard A. Lempicki posted to annotation classification function functional-genomics tool by bertelsen on 2009-03-09 13:35:23 as along with 9 people VGreiff ndiaz guhjy aalibes dragonrez jfr rdiaz mellabee heliopais
	DAVID: Database for Annotation, Visualization, and Integrated Discovery [My Copy] Genome Biology, Vol. 4, No. 5. (2003), P3. by Glynn Dennis, Brad Sherman, Douglas Hosack, et al.Jun Yang, Wei Gao, H. Clifford Lane, Richard Lempicki posted to annotation database discovery functional-genomics integrating visualization by bertelsen on 2009-03-09 12:47:32 as along with 6 people ipark-kaist VGreiff capitall incovoma beete guhjy
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [My Copy] Nature Protocols, Vol. 4, No. 1. (18 December 2008), pp. 44-57. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to analysis annotation gene-expression high-throughput pathway tool by bertelsen on 2009-03-07 22:26:27 as along with 16 people and 2 groups darian rschulz jperkins tonamswish operon VGreiff jfr Stew Sonix dswan guhjy wimufi brianb idonaldson mrochman daforerog Bioinformatics - CRUK Bioinformatics
	Ontology annotation treebrowser : an interactive tool where the complementarity of medical subject headings and gene ontology improves the interpretation of gene lists. [My Copy] Appl Bioinformatics, Vol. 5, No. 4. (2006), pp. 225-236. by A. Bresell, B. Servenius, B. Persson posted to annotation gene-expression go mesh ontology by bertelsen on 2009-03-07 22:10:14 as along with 1 person guhjy
	Interpreting microarray results with gene ontology and MeSH. [My Copy] Methods Mol Biol, Vol. 377 (2007), pp. 223-242. by J. D. Osborne, L. J. Zhu, S. M. Lin, W. A. Kibbe posted to annotation interpretation microarray ontology review by bertelsen on 2009-03-07 21:47:20 as
	DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists [My Copy] Nucl. Acids Res., Vol. 35, No. Web Server issue. (18 June 2007), gkm415. by Da W. Huang, Brad T. Sherman, Qina Tan, et al.Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki posted to annotation bioinformatics database gene-expression tool by bertelsen on 2009-03-07 21:37:52 as along with 3 people VGreiff guhjy jfr
	Gene functional annotation by statistical analysis of biomedical articles. [My Copy] International journal of medical informatics, Vol. 76, No. 8. (August 2007), pp. 601-613. by T. Theodosiou, L. Angelis, A. Vakali, G. N. Thomopoulos posted to analysis annotation articles biomedical function functional-genomics statistical by bertelsen on 2009-03-03 23:38:19 as
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to annotation gene go ontology review by bertelsen on 2009-03-03 21:50:12 as along with 40 people and 3 groups singhsh epigenetics davidmam Thaverkamp druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	Tag-based approaches for transcriptome research and genome annotation. [My Copy] Nature methods, Vol. 2, No. 7. (July 2005), pp. 495-502. by Matthias Harbers, Piero Carninci posted to annotation cage genome review sage tags transcriptome by bertelsen on 2008-11-18 14:00:36 as along with 5 people amiezoul jbhiatt guhjy gpappas xiaobeizhao
	CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by H. Kawaji, T. Kasukawa, S. Fukuda, et al.S. Katayama, C. Kai, J. Kawai, P. Carninci, Y. Hayashizaki posted to annotation cage database function mouse promoter resource by bertelsen on 2008-11-18 13:49:15 as along with 7 people myrtilus troels_marstrand olympos kkishore12 gjuggler xiaobeizhao guhjy
	Salvaging Affymetrix probes after probe-level re-annotation. [My Copy] BMC research notes, Vol. 1, No. 1. (19 August 2008) by Wim W. de Leeuw, Han H. Rauwerda, Martijs M. Jonker, Timo T. Breit posted to affymetrix alternative annotation cdf probe-level by bertelsen on 2008-09-17 22:31:53 as along with 2 people heliopais guhjy
	Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Alexandre Kuhn, Ruth L. Carter, Mauro Delorenzi posted to analysis annotation bioconductor cross-platform microarray r by bertelsen on 2008-07-01 18:05:44 as along with 13 people anf natstreet druvus guhjy jfr balicea dullhunk ghattem RamuAnandakrishnan heliopais ablejec zhouyu sanchezbuelna
	AceView: a comprehensive cDNA-supported gene and transcripts annotation. [My Copy] Genome Biol, Vol. 7 Suppl 1 (2006) by D. Thierry-Mieg, J. Thierry-Mieg posted to annotation cdna database transcripts by bertelsen on 2008-06-25 17:04:42 as along with 3 people and 1 group guhjy wenhan jandot Bioinformatics
	Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations [My Copy] BMC Bioinformatics, Vol. 7 (02 June 2006), 276. by Michal J. Okoniewski, Crispin J. Miller posted to annotation hybridization microarray probe by bertelsen on 2008-06-10 21:13:39 as along with 4 people jfr dquest medmhw heliopais
	AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 18. (15 September 2007), pp. 2385-2390. by Hongfang Liu, Barry R. Zeeberg, Gang Qu, et al.A. Gunes Koru, Alessandro Ferrucci, Ari Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, John N. Weinstein posted to affy affymetrix annotation probe web by bertelsen on 2008-06-10 21:10:04 as along with 8 people VGreiff giovenko guhjy jfr ghattem ryanraaum heliopais Montrachet
	An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data [My Copy] Genome Biology, Vol. 8 (11 May 2007), R79. by Michal J. Okoniewski, Tim Yates, Sian Dibben, Crispin J. Miller posted to affymetrix analysis annotation exons microarray by bertelsen on 2008-06-10 21:08:40 as along with 3 people idonaldson jfr heliopais
	Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (11 June 2007), 194. by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li posted to annotation interpretation microarray probe transcript by bertelsen on 2008-06-10 21:07:26 as along with 3 people guhjy jfr heliopais
	A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array [My Copy] Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31. by Jeremy Harbig, Robert Sprinkle, Steven A. Enkemann posted to annotation mapping microarray probe sequence by bertelsen on 2008-06-10 21:04:28 as along with 3 people jfr incovoma heliopais
	Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. [My Copy] Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343. by P. C. Boutros, A. B. Okey posted to annotation biology clustering co-expression co-regulation microarray pattern-recognition proteomics review unsupervised by bertelsen on 2008-06-10 20:41:00 as along with 10 people tonamswish bozdagd jfr metamerist tabu samal srfairclough akastrin xili03 renatomilani
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted to annotation microarray by bertelsen on 2008-04-29 11:54:11 as along with 11 people and 2 groups rmk lwaldron giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet shikin waszak Bioinformatics GeneGo
	Alternative mapping of probes to genes for Affymetrix chips. [My Copy] BMC Bioinformatics, Vol. 5 (14 August 2004) by L. Gautier, M. Møller, L. Friis-Hansen, S. Knudsen posted to probe-level microarray mapping genes bioconductor annotation alternative affymetrix by bertelsen on 2008-04-29 09:24:40 as along with 3 people sebastien_vigneau ghattem heliopais
	Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays [My Copy] BMC Bioinformatics, Vol. 8 (29 March 2007), 108. by Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. Cam posted to annotation high-resolution microarray oligonucleotide probe transcript by bertelsen on 2008-04-28 22:15:44 as along with 5 people and 1 group heliopais guhjy jfr frohike ghattem Bioinformatics

Note: You may cite this page as: http://www.citeulike.org/user/bertelsen/tag/annotation

microarray	223
analysis	129
review	125
gene-expression	124
systems-biology	95
bayesian	92
cancer	78
expression	59
networks	57
affymetrix	48
gene	46
annotation	44
functional-genomics	44
software	44
biology	42
tool	42
model	40
network	38
regulation	38
modelling	36
data	34
bioinformatics	31
disease	29
modeling	29
pathway	28
genechip	27
models	27
rna	27
human	26
polyadenylation	26
drug-discovery	25
clustering	24
multi-scale	24
oligonucleotide	24
gene-regulation	23
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
differential	20
molecular	20
mrna	20
probability	20
transcription	20
dynamic	19
factor-analysis	19
database	18
integrative	18
probe-level	18
stochastic	18
chemical	17
mathematical	17
probabilistic	17
simulation	17
dirichlet-process	16
function	16
integration	16
kinetic	16
nonparametric	16
algorithm	15
comparison	15
computational	15
drug	15
experiment	15
genome	15
genomics	15
high-throughput	15
r	15
sampling	15
sequence	15
statistical	15
structure	15
theory	15
enrichment-analysis	14
gastric	14
noise	14
normalization	14
prediction	14
python	14
regression	14
array	13
biochemical-systems-theory	13
bioconductor	13
classification	13
control	13
framework	13
go	13
interpretation	13
mirna	13
pathways	13
personalized-medicine	13
phenotype	13
protein	13
statistics	13
therapy	13
algorithms	12
clinical	12
complexity	12
hierarchical	12
latent	12
mechanism	12
modules	12
promoter	12
transcriptome	12
computational-biology	11
distribution	11
evolution	11
non-protein-coding	11
oncogenesis	11
quality	11
sparse	11
tumour	11
alternative	10
genetic	10
integrating	10
mcmc	10
mixture	10
modular	10
proteomics	10
quantitative	10
systems	10
test	10
uncertainty	10
3-utr	9
biomedical	9
biophysics	9
cell-biology	9
data-integration	9
design	9
diagnostic	9
discovery	9
dna	9
hypothesis	9
information	9
interactions	9
large-scale	9
machine-learning	9
method	9
methodology	9
multiple	9
quality-control	9
selection	9
s-system	9
therapeutic	9
transcription-factor	9
visualization	9
background	8
experimental-design	8
heterogeneity	8
hybridization	8
ica	8
insilico	8
linear	8
measure	8
methods	8
overview	8
rnai	8
synthetic-biology	8
systemic-computation	8
time-series	8
transcripts	8
utr	8
agent-based	7
binary	7
development	7
drug-target	7
emergent-properties	7
infection	7
invivo	7
mapping	7
multivariate	7
organization	7
pathology	7
physiology	7
rats	7
specificity	7
tiling	7
time-course	7
translation	7
webservices	7
application	6
cdna	6
chip-chip	6
computation	6
computing	6
databases	6
epigenetic	6
evolutionary-computation	6
feature	6
genetics	6
graphs	6
mammalian	6
matrix-factorization	6
metabolomics	6
nonlinear	6
pathway-analysis	6
pattern	6
pre-processing	6
primary	6
prior	6
processes	6
profiles	6
reactions	6
reverse-engineering	6
rna-seq	6
scientific	6
sequencing	6
summary	6
thermodynamics	6
tumor	6
upt	6
apoptosis	5
baysian	5
bias	5
binfbib	5
biomarker	5
book	5
cell-cycle	5
comparative	5
correction	5
dependence	5
encode	5
environment	5
error	5
eukaryotic	5
false	5
gaussian	5
gene-function	5
genome-wide	5
gibbs	5
identification	5
import	5
invitro	5
kidney	5
localization	5
measurement	5
medical	5
membrane	5
metabolic-network	5
ncrna	5
nmd	5
nonsense-mediated	5
normal	5
ontologies	5
optimization	5
pca	5
physical	5
process	5
profiling	5
profilingmethods	5
protein-expression	5
quality-assessment	5
quantitative-trait-loci	5
sensitivity	5
signal	5
simulations	5
splicing	5
synthesis	5
time	5
topological	5
treatment	5
truncated	5
unknown	5
variation	5
variational	5
5-utr	4
animals	4
approximation	4
biomolecular	4
cage	4
cell	4
circuits	4
co-expression	4
co-regulation	4
decay	4
diversity	4
dynamics	4
endolymphatic-sac	4
entropy	4
estimation	4
exons	4
exploratory	4
filtering	4
gastric-cancer-group	4
gene-set-analysis	4
global	4
graphical-modelling	4
grid	4
guide	4
high-dimensional	4
hybrid	4
inflammation	4
inhibitors	4
inner-ear	4
interface	4
knowledge-based	4
literature	4
local	4
map	4
mechanistic	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pharmacogenomic	4
philosophy	4
physics	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
combinatorial	3
component	3
correlation	3
dataset	3
differential-equation	3
differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
enzyme	3
evaluation	3
exchangeability	3
fdr	3
gene-circuits	3
generalized	3
genes	3
genotyping	3
histological	3
hmm	3
humans	3
identifiability	3
independence	3
interference	3
introduction	3
languages	3
learning	3
management	3
medicine	3
metastatic	3
model-selection	3
modularity	3
multinomial	3
natural	3
nonnegative	3
nuclear	3
parasitology	3
pattern-recognition	3
performance	3
perturbation	3
polymerase	3
random	3
ranking	3
regulators	3
renormalization-group-analysis	3
repository	3
reproducibility	3
resonance	3
resource	3
robust	3
signaling-system	3
signal-transduction	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
approximations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
comment	2
community	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
fractal	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
homologous	2
image-processing	2
immune-system	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
lung	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
molecular-connectivity-map	2
multi-target	2
mutations	2
neuroscience	2
nonequilibrium	2
non-specific	2
nucleic	2
numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2

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