bertelsen's cancer [78 articles] Export

Recent papers added to bertelsen's library classified by the tag cancer. You can also see everyone's cancer.

	Heterogeneity in multistage carcinogenesis and mixture modeling [My Copy] Theoretical Biology and Medical Modelling, Vol. 5, No. 1. (21 July 2008), 13. by Sandro Gsteiger, Stephan Morgenthaler posted to modelling mixture heterogeneity carcinogenesis cancer by bertelsen on 2009-11-23 21:52:33 as
	Simulating non-small cell lung cancer with a multiscale agent-based model [My Copy] Theoretical Biology and Medical Modelling, Vol. 4, No. 1. (21 December 2007), 50. by Zhihui Wang, Le Zhang, Jonathan Sagotsky, Thomas Deisboeck posted to spatio-temporal simulation signal-transduction phenotype pathway multi-scale molecular modelling lung intracellular epidermal_growth_factor dynamics chemotactic cell-migration cancer agent-based by bertelsen on 2009-11-23 21:45:02 as
	Local cell metrics: a novel method for analysis of cell-cell interactions [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 350. by Jing Su, Pedro Zapata, Chien C. Chen, J. Carson Meredith posted to tissue-level regulation probabilistic multi-scale modelling metric local imaging histological environment development cell-population cell-interaction cancer biology bayesian by bertelsen on 2009-11-23 20:54:10 as along with 1 person kevinzheng1983
	Personalized Cancer Therapy With Selective Kinase Inhibitors: An Emerging Paradigm in Medical Oncology [My Copy] J Clin Oncol, Vol. 27, No. 33. (20 November 2009), pp. 5650-5659. by Ultan McDermott, Jeff Settleman posted to tumour therapy personalized-medicine medical cancer by bertelsen on 2009-11-23 13:45:38 as
	CANCER: Enhanced: Addiction to Oncogenes--the Achilles Heal of Cancer [My Copy] Science, Vol. 297, No. 5578. (5 July 2002), pp. 63-64. by I. Bernard Weinstein posted to oncogene-addiction cancer by bertelsen on 2009-11-23 13:39:04 as along with 1 person myzhang
	Oncogene Addiction versus Oncogene Amnesia: Perhaps More than Just a Bad Habit? [My Copy] Cancer Res, Vol. 68, No. 9. (1 May 2008), pp. 3081-3086. by Dean W. Felsher, I. Bernard Weinstein, Andrew Joe posted to tumour-suppressor oncogenesis oncogene-addiction cancer by bertelsen on 2009-11-23 13:25:31 as along with 2 people wmatsui guhjy
	Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 [My Copy] Nature, Vol. 462, No. 7269. (21 October 2009), pp. 108-112. by David A. Barbie, Pablo Tamayo, Jesse S. Boehm, et al.So Y. Kim, Susan E. Moody, Ian F. Dunn, Anna C. Schinzel, Peter Sandy, Etienne Meylan, Claudia Scholl, Stefan Frohling, Edmond M. Chan, Martin L. Sos, Kathrin Michel, Craig Mermel, Serena J. Silver, Barbara A. Weir, Jan H. Reiling, Qing Sheng, Piyush B. Gupta, Raymond C. Wadlow, Hanh Le, Sebastian Hoersch, Ben S. Wittner, Sridhar Ramaswamy, David M. Livingston, David M. Sabatini, Matthew Meyerson, Roman K. Thomas, Eric S. Lander, Jill P. Mesirov, David E. Root, D. Gary Gilliland, Tyler Jacks, William C. Hahn posted to signaling-pathway rnai pathway-analysis oncogenes drug-target drug-discovery cancer by bertelsen on 2009-11-22 17:48:22 as along with 1 person mnishimu
	Gene Expression Profiling to Identify the Histogenetic Origin of Metastatic Adenocarcinomas of Unknown Primary [My Copy] J Clin Oncol, Vol. 26, No. 27. (20 September 2008), pp. 4435-4441. by Hugo M. Horlings, Ryan K. van Laar, Jan-Martijn Kerst, et al.Helgi H. Helgason, Jelle Wesseling, Jacobus J. M. van der Hoeven, Marc O. Warmoes, Arno Floore, Anke Witteveen, Jaana Lahti-Domenici, Annuska M. Glas, Laura J. Van't Veer, Daphne de Jong posted to upt tumour metastatitic immunohistochemical histological genetic cancer adenocarcinomas by bertelsen on 2009-11-19 21:37:41 as along with 2 people Zephyrus frohike
	Cancer of Unknown Primary Site: Missing Primary or Missing Biology? [My Copy] Oncologist, Vol. 12, No. 4. (1 April 2007), pp. 418-425. by George Pentheroudakis, Evangelos Briasoulis, Nicholas Pavlidis posted to upt unknown tumour primary cancer biology by bertelsen on 2009-11-19 21:36:26 as
	Implications of applied research for prognosis and therapy of breast cancer. [My Copy] Critical reviews in oncology/hematology, Vol. 65, No. 3. (March 2008), pp. 223-234. by M. F. Barginear, T. Bradley, I. Shapira, D. R. Budman posted to therapy prognosis cancer breast_cancer by bertelsen on 2009-11-16 20:45:17 as
	The term "carcinoid" is a misnomer: the evidence based on local invasion. [My Copy] Journal of experimental & clinical cancer research : CR, Vol. 28 (2009) by Jun Soga posted to intestine carcinoid cancer by bertelsen on 2009-11-16 20:44:35 as
	Gastroenteropancreatic neuroendocrine tumours. [My Copy] The lancet oncology, Vol. 9, No. 1. (January 2008), pp. 61-72. by Irvin M. Modlin, Kjell Oberg, Daniel C. Chung, et al.Robert T. Jensen, Wouter W. de Herder, Rajesh V. Thakker, Martyn Caplin, Gianfranco Delle Fave, Greg A. Kaltsas, Eric P. Krenning, Steven F. Moss, Ola Nilsson, Guido Rindi, Ramon Salazar, Philippe Ruszniewski, Anders Sundin posted to neuroendocrine_tumours gastric clinical cancer by bertelsen on 2009-11-16 20:35:23 as
	Trans-Study Projection of Genomic Biomarkers in Analysis of Oncogene Deregulation and Breast Cancer [My Copy] In The Oxford Handbook of Applied Bayesian Analysis (April 2010) by Dan Merl, Joe Lucas, Joe Nevins, Haige Shen, Mike West edited by Tony O'Hagan, Mike West posted to translational-medicine oncogenesis factor-analysis cancer biomarker by bertelsen on 2009-10-13 20:25:24 as
	The application of single nucleotide polymorphism microarrays in cancer research. [My Copy] Current genomics, Vol. 8, No. 4. (June 2007), pp. 219-228. by Xueying Mao, Bryan D. Young, Yong-Jie J. Lu posted to snp microarray cancer application by bertelsen on 2009-10-08 00:13:27 as
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to review regulation mrna human cancer 3-utr by bertelsen on 2009-10-07 22:17:09 as along with 1 person hcoller
	Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 673-684. by Christine Mayr, David P. Bartel posted to tumorigenesis polyadenylation oncogenesis cancer 3-utr by bertelsen on 2009-10-07 22:00:54 as along with 11 people and 1 group ongenetics frohike jwfoley colinveal manto hcoller gbloeb jbhiatt ashkelon13 megraw rschulz cube_and_beyond
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to prognosis pathway-analysis oncogenesis gastric clinical cancer by bertelsen on 2009-10-07 16:15:29 as along with 3 people brianb renatomilani ptrobajo
	Integrative analysis of the cancer transcriptome [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S31-S37. by Daniel R. Rhodes, Arul M. Chinnaiyan posted to transcriptome microarray integrative cancer analysis by bertelsen on 2009-10-06 23:46:47 as along with 8 people and 2 groups daforerog cswinburne aalibes textoris ealloza shikin waghsk srp33 BioinfoCIPF GeneGo
	An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer [My Copy] Breast Cancer Research, Vol. 11, No. 4. (28 July 2009), R55. by Andrea Bild, Joel Parker, Adam Gustafson, et al.Chaitanya Acharya, Katherine Hoadley, Carey Anders, P. Kelly Marcom, Lisa Carey, Anil Potti, Joseph Nevins, Charles Perou posted to tumour therapy phenotype pathway-analysis integration gene-expression drug-discovery chemotherapy cancer by bertelsen on 2009-10-06 21:37:06 as along with 1 person srp33
	Utilization of genomic signatures to direct use of primary chemotherapy. [My Copy] Current opinion in genetics & development, Vol. 18, No. 1. (February 2008), pp. 62-67. by Anil Potti, Joseph R. Nevins posted to therapy signatures review gene-expression clinical cancer by bertelsen on 2009-10-06 20:57:01 as
	Systems biology reveals new strategies for personalizing cancer medicine and confirms the role of PTEN in resistance to trastuzumab. [My Copy] Cancer research, Vol. 69, No. 16. (15 August 2009), pp. 6713-6720. by Dana Faratian, Alexey Goltsov, Galina Lebedeva, et al.Anatoly Sorokin, Stuart Moodie, Peter Mullen, Charlene Kay, In Hwa, Simon Langdon, Igor Goryanin, David J. Harrison posted to therapy systems-biology protein-expression personalized-medicine kinetic insilico clinical cancer by bertelsen on 2009-10-06 20:39:56 as along with 4 people karthikraman schwartzjmc ericrpaquet frohike
	THE TWO HISTOLOGICAL MAIN TYPES OF GASTRIC CARCINOMA: DIFFUSE AND SO-CALLED INTESTINAL-TYPE CARCINOMA. AN ATTEMPT AT A HISTO-CLINICAL CLASSIFICATION. [My Copy] Acta pathologica et microbiologica Scandinavica, Vol. 64 (1965), pp. 31-49. by P. LAUREN posted to histological gastric classification carcinoma cancer by bertelsen on 2009-10-05 23:33:56 as
	The Biology of Gastric Cancers [My Copy] (26 November 2008) edited by Timothy C. Wang, James G. Fox, Andrew S. Giraud posted to gastric cancer book biology by bertelsen on 2009-10-05 23:06:01 as
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription signatures processes networks multi-scale molecular modules modular models microarray mechanistic gene-regulation disease comparative cancer by bertelsen on 2009-10-05 15:56:21 as along with 13 people and 1 group chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
	Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. [My Copy] JAMA : the journal of the American Medical Association, Vol. 299, No. 13. (2 April 2008), pp. 1574-1587. by Chaitanya R. Acharya, David S. Hsu, Carey K. Anders, et al.Ariel Anguiano, Kelly H. Salter, Kelli S. Walters, Richard C. Redman, Sascha A. Tuchman, Cynthia A. Moylan, Sayan Mukherjee, William T. Barry, Holly K. Dressman, Geoffrey S. Ginsburg, Kelly P. Marcom, Katherine S. Garman, Gary H. Lyman, Joseph R. Nevins, Anil Potti posted to signature personalized-medicine pathology gene-expression clinical cancer by bertelsen on 2009-10-04 12:12:42 as along with 4 people ptrobajo Zephyrus jfr guhjy
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to gastric-cancer-group treatment progression prognosis pathway modelling microarray mechanism interpretation integrative etiology diagnosis dependence cancer by bertelsen on 2009-10-04 00:30:01 as along with 6 people ptrobajo wei aviad_work ipark-kaist bootsy jfr
	A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666. by A. Callegaro, D. Basso, S. Bicciato posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as
	Cancer systems biology: exploring cancer-associated genes on cellular networks. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 64, No. 14. (July 2007), pp. 1752-1762. by E. Wang, A. Lenferink, M. O'Connor-McCourt posted to systems-biology review networks gene-expression cellular-networks cancer by bertelsen on 2009-09-15 21:18:24 as along with 3 people and 2 groups jfr ealloza diging_data BioinfoCIPF BTS-PT-AS-CS
	An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Min Xu, Ming-Chih C. Kao, Juan Nunez-Iglesias, Joseph R. Nevins, Mike West, Xianghong Jasmine J. Zhou posted to topological phenotype pathways network modules microarray methodology integrative integration information functional-genomics disease data-integration cancer by bertelsen on 2009-09-15 20:56:41 as along with 4 people guhjy Zephyrus cswinburne jfr
	A module map showing conditional activity of expression modules in cancer. [My Copy] Nature genetics, Vol. 36, No. 10. (October 2004), pp. 1090-1098. by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev posted to tumors therapeutic prognostic modules microarray integration gene-expression diagnostic cancer by bertelsen on 2009-09-15 20:51:43 as along with 7 people and 1 group ipark-kaist saman_vp lwaldron jimineep ladygoat balajis nirfriedman CGREL
	Towards whole-organ modelling of tumour growth [My Copy] Progress in Biophysics and Molecular Biology, Vol. 85, No. 2-3. (July 2004), pp. 451-472. by T. Alarcon posted to tumour-growth review organ multi-scale modelling integrative drug-delivery cancer by bertelsen on 2009-09-06 20:04:17 as along with 1 person glyg
	From single- to multi-target drugs in cancer therapy: when aspecificity becomes an advantage. [My Copy] Current medicinal chemistry, Vol. 15, No. 5. (2008), pp. 422-432. by A. Petrelli, S. Giordano posted to therapy single-target review pathways multi-target inhibitors drug-target drug-discovery drug cancer by bertelsen on 2009-09-05 10:50:15 as along with 1 person biomcgary
	Microtubule assembly dynamics: an attractive target for anticancer drugs. [My Copy] IUBMB life, Vol. 60, No. 6. (June 2008), pp. 368-375. by Parminder Singh, Krishnan Rathinasamy, Renu Mohan, Dulal Panda posted to treatment review mitosis microtubule eukaryotic dynamics drug-target disease chemotherapy cancer apoptosis by bertelsen on 2009-09-05 10:40:39 as
	Targeting inhibitor of apoptosis proteins (IAPs) for cancer therapy. [My Copy] Anti-cancer agents in medicinal chemistry, Vol. 8, No. 5. (June 2008), pp. 533-539. by Simone Fulda posted to tumorigenesis tumor therapy review inhibitors cancer apoptosis by bertelsen on 2009-09-05 10:37:26 as
	Modulation of cellular response to anticancer treatment by caffeine: inhibition of cell cycle checkpoints, DNA repair and more. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 4. (August 2008), pp. 325-336. by Michal Sabisz, Andrzej Skladanowski posted to treatment review inhibitors cellular-response cancer caffeine by bertelsen on 2009-09-05 10:34:23 as along with 2 people Zephyrus guhjy
	Cancer therapy: targeting cell cycle regulators. [My Copy] Anti-cancer agents in medicinal chemistry, Vol. 8, No. 7. (October 2008), pp. 723-731. by Martin Johansson, Jenny Liao L. Persson posted to therapy review regulators pathways inhibitors human drug-target drug cell-growth cell-cycle cancer apoptosis by bertelsen on 2009-09-05 10:31:30 as
	Metabolic control analysis in drug discovery and disease. [My Copy] Nature biotechnology, Vol. 20, No. 3. (March 2002), pp. 243-249. by Marta Cascante, Laszlo G. Boros, Begoña Comin-Anduix, Pedro de Atauri, Josep J. Centelles, Paul W-N W. Lee posted to therapy review pathways metabolic-network metabolic-control-analysis medical_applications functional-genomics drug-discovery disease cancer_therapy cancer biochemical by bertelsen on 2009-09-02 16:05:19 as along with 1 person alexg
	Cancer: a Systems Biology disease. [My Copy] Bio Systems, Vol. 83, No. 2-3. (February 2006), pp. 81-90. by Jorrit J. Hornberg, Frank J. Bruggeman, Hans V. Westerhoff, Jan Lankelma posted to systems-biology review cancer by bertelsen on 2009-09-01 18:09:38 as along with 7 people and 1 group Scis0000002 chihchun_chen ubcg08l Borelli julius fishtank maburkitt SysbioMPI-TCells
	Principles of cancer therapy: oncogene and non-oncogene addiction. [My Copy] Cell, Vol. 136, No. 5. (6 March 2009), pp. 823-837. by Ji Luo, Nicole L. Solimini, Stephen J. Elledge posted to tumorigenesis therapy stress oncogenesis drug-target cancer by bertelsen on 2009-09-01 14:08:00 as along with 2 people frohike guhjy
	Integration of Molecular Profiling into the Lung Cancer Clinic [My Copy] Clin Cancer Res, Vol. 15, No. 17. (1 September 2009), pp. 5317-5322. by William Pao, Mark G. Kris, A. John Iafrate, et al.Marc Ladanyi, Pasi A. Janne, Ignacio I. Wistuba, Ryn Miake-Lye, Roy S. Herbst, David P. Carbone, Bruce E. Johnson, Thomas J. Lynch posted to therapy personalized-medicine microarray medical lung clinical cancer by bertelsen on 2009-09-01 14:01:06 as along with 1 person frohike
	The hallmarks of cancer. [My Copy] Cell, Vol. 100, No. 1. (7 January 2000), pp. 57-70. by D. Hanahan, R. A. Weinberg posted to review cancer by bertelsen on 2009-08-29 10:24:27 as along with 25 people misonneh myzhang chemnerd1 ipark-kaist singhsh JeremyZucker Zephyrus rklancer guhjy kentsis Borelli jfr laurabailey archroad iskanbasal mhucka holmesjo SeungjoonOh cerami tibbitts waghsk zebkhan frohike catcremona gwenknight
	Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). [My Copy] Molecular oncology, Vol. 3, No. 1. (February 2009), pp. 9-17. by Ruedi Aebersold, Charles Auffray, Erin Baney, et al.Emmanuel Barillot, Alvis Brazma, Catherine Brett, Søren Brunak, Atul Butte, Andrea Califano, Julio Celis, Tanja Cufer, James Ferrell, David Galas, Daniel Gallahan, Robert Gatenby, Albert Goldbeter, Natasa Hace, Adriano Henney, Lee Hood, Ravi Iyengar, Vicky Jackson, Ollie Kallioniemi, Ursula Klingmüller, Patrik Kolar, Walter Kolch, Christina Kyriakopoulou, Frank Laplace, Hans Lehrach, Frederick Marcus, Lynn Matrisian, Garry Nolan, Lucas Pelkmans, Anil Potti, Chris Sander, Marija Seljak, Dinah Singer, Peter Sorger, Hendrik Stunnenberg, Giulio Superti-Furga, Mathias Uhlen, Marc Vidal, John Weinstein, Dennis Wigle, Michael Williams, Olaf Wolkenhauer, Boris Zhivotovsky, Andrei Zinovyev, Blaz Zupan posted to treatment systems-biology prediction personalized-medicine pathway drug diagnostic clinical cancer by bertelsen on 2009-08-27 14:19:57 as along with 2 people reyez brianb
	Multiscale agent-based cancer modeling [My Copy] Journal of Mathematical Biology, Vol. 58, No. 4. (1 April 2009), pp. 545-559. by Le Zhang, Zhihui Wang, Jonathan A. Sagotsky, Thomas S. Deisboeck posted to tumor systems-biology systemic-computation simulation network multi-scale modeling integrative insilico cancer agent-based by bertelsen on 2009-08-27 13:14:53 as along with 1 person frohike
	Dynamic computational modeling in the search for better breast cancer drug therapy. [My Copy] Pharmacogenomics, Vol. 8, No. 12. (December 2007), pp. 1757-1761. by Dana Faratian, Stuart L. Moodie, David J. Harrison, Igor Goryanin posted to therapy pathology modeling dynamic drug computational cancer by bertelsen on 2009-08-27 11:49:58 as
	Integrative mathematical oncology [My Copy] Nat Rev Cancer, Vol. 8, No. 3. (March 2008), pp. 227-234. by Alexander R. A. Anderson, Vito Quaranta posted to oncogenesis modelling mechanism mathematical integrative cancer by bertelsen on 2009-08-26 22:47:03 as along with 2 people jfr guhjy
	Enabling personalized cancer medicine through analysis of gene-expression patterns [My Copy] Nature, Vol. 452, No. 7187. (3 April 2008), pp. 564-570. by Laura J. van 'T Veer, Rene Bernards posted to personalized-medicine gene-expression cancer analysis by bertelsen on 2009-08-26 22:44:47 as along with 4 people and 1 group Zephyrus reyez jfr raiyar Roswell Cancer Crosstalk
	Systems pathology --- taking molecular pathology into a new dimension. [My Copy] Nature reviews. Clinical oncology, Vol. 6, No. 8. (7 August 2009), pp. 455-464. by Dana Faratian, Robert G. Clyde, John W. Crawford, David J. Harrison posted to systems-biology review pathology model mathematical data-integration clinical cancer application by bertelsen on 2009-08-26 22:39:06 as along with 1 person operon
	The opportunities and challenges of personalized genome-based molecular therapies for cancer: targets, technologies, and molecular chaperones. [My Copy] Cancer chemotherapy and pharmacology, Vol. 52 Suppl 1 (July 2003) by Paul Workman posted to review personalized-medicine drug cancer by bertelsen on 2009-08-25 11:05:46 as
	Cancer biology: Signatures guide drug choice [My Copy] Nature, Vol. 439, No. 7074. (19 January 2006), pp. 274-275. by Julian Downward posted to biology cancer drug drug-discovery gene-expression signature tumour by bertelsen on 2009-07-24 21:11:57 as along with 2 people and 1 group guhjy julius SysbioMPI-TCells
	Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics [My Copy] PLoS ONE, Vol. 4, No. 2. (19 February 2009), e4523. by Joseph E. Lucas, Carlos M. Carvalho, Julia L. Chen, Jen-Tsan Chi, Mike West posted to biomarker cancer cross-study factor-analysis gene-expression genomics invitro invivo microarray by bertelsen on 2009-07-24 20:01:11 as along with 4 people zufar jfr frohike jmstat

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microarray	222
analysis	129
review	123
gene-expression	122
systems-biology	95
bayesian	92
cancer	78
expression	59
networks	57
affymetrix	48
gene	45
functional-genomics	44
software	44
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biology	42
tool	42
model	40
regulation	38
network	37
modelling	36
data	34
bioinformatics	31
disease	29
modeling	29
pathway	28
genechip	27
models	27
rna	27
polyadenylation	26
human	25
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drug-discovery	24
multi-scale	24
oligonucleotide	24
gene-regulation	23
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
molecular	20
mrna	20
probability	20
transcription	20
differential	19
dynamic	19
factor-analysis	19
database	18
integrative	18
probe-level	18
stochastic	18
chemical	17
mathematical	17
probabilistic	17
simulation	17
dirichlet-process	16
function	16
integration	16
kinetic	16
nonparametric	16
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experiment	15
genome	15
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high-throughput	15
r	15
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sequence	15
statistical	15
structure	15
theory	15
algorithm	14
enrichment-analysis	14
gastric	14
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prediction	14
python	14
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bioconductor	13
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go	13
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evolution	11
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quality	11
sparse	11
tumour	11
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3-utr	9
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cell-biology	9
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multiple	9
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binfbib	5
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pca	5
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5-utr	4
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inner-ear	4
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ode	4
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power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
combinatorial	3
component	3
correlation	3
dataset	3
differential-equation	3
differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
enzyme	3
evaluation	3
exchangeability	3
fdr	3
gene-circuits	3
generalized	3
genes	3
genotyping	3
histological	3
hmm	3
humans	3
identifiability	3
independence	3
interference	3
introduction	3
languages	3
learning	3
management	3
medicine	3
metastatic	3
model-selection	3
modularity	3
multinomial	3
natural	3
nonnegative	3
nuclear	3
parasitology	3
pattern-recognition	3
performance	3
perturbation	3
polymerase	3
random	3
ranking	3
regulators	3
renormalization-group-analysis	3
repository	3
reproducibility	3
resonance	3
resource	3
robust	3
signaling-system	3
signal-transduction	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
approximations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
fractal	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
homologous	2
image-processing	2
immune-system	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
lung	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
molecular-connectivity-map	2
multi-target	2
mutations	2
neuroscience	2
nonequilibrium	2
non-specific	2
nucleic	2
numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2
present_absent_call	2
primer	2
probesgenetics	2
probit	2
programming	2
properties	2
proteome	2
protozoan	2
rate-law	2
reasoning	2
rma	2
sage	2
saturation	2
semantic-web	2
sequential	2
set	2
small	2
space	2
stem-cells	2
stochasticity	2
stress	2
subcellular	2
target	2
t-cell	2
threshold	2
tissue-level	2
translational-medicine	2
t-test	2
two-color	2
user-computer	2
variational-inference	2
vector	2
2d	1
3d	1
454	1
5--3	1
abstracts	1
across	1
adenocarcinomas	1
agilent	1
aging	1
algebra	1
allometric	1
alphabet	1
alternate	1
analysisinstrumentationmethods	1
analytical	1
and	1
animal-communication	1
anlaysis	1
annotations	1
antisense	1
antiviral	1
applied	1
approximat	1
aquaporins	1
architecture	1
articles	1
artifacts	1
assay	1
atlas	1
atmosphere	1
atom	1
averaging	1
basic	1
bayes-theorem	1
bifurcation	1
bilayer	1
binding	1
binomial	1
bioactive	1
biomechanical	1
biomedicine	1
biophysic	1
biosphere	1
black-box	1
brain	1
breast_cancer	1
bridges	1
caffeine	1
calculus	1
cancer_therapy	1
caner	1
canonical	1
cap	1
carcinogenesis	1
carcinoid	1
carcinoma	1
causal	1
cds	1
c-elegans	1
cell-growth	1
cell-interaction	1
cell-movement	1
cellular-automata	1
cellular-networks	1
cellular-response	1
cell-wall	1
cgh	1
chain	1
chemistry	1
chemotactic	1
chicken	1
chip	1
chromosomal-localization	1
chromosomes	1
civil	1
cleavage	1
climate	1
cloud-computing	1
clouds	1
cluster	1
coarse-grained	1
comment	1
community	1
comparative-genomic-hybridization	1
compartments	1
concepts	1
conditional-independence	1
conference	1
confounding	1
conserved	1
consistency	1
content-management-system	1
contrast	1
conversion	1
cooperativity	1
coordination	1
co-regulated	1
course	1
critical	1
curvature	1
curves	1
cystic	1
cystogenesis	1
cytokines	1
cytomics	1
cytoscape	1
cytoskeleton	1
cytosol	1
dag	1
decomposition	1
density-estimation	1
developmental	1
diagnosis	1
diagram	1
dicer	1
dilution	1
dimension-reduction	1
discover	1
discretization	1
discrimination	1
dispersion	1
dissection	1
divergence	1
division	1
dominance	1
drug-delivery	1
drug-resistant	1
dyadic	1
dye	1
egg	1
electrophoresis	1
embryo	1
empirical-bayes	1
energy	1
enterococcus	1
epg-bodies	1
epidemic	1
epidemiology	1
epidermal_growth_factor	1
epigenome	1
equilibrium	1
equipment	1
e-science	1
estimates	1
etiology	1
european	1
examples	1
expectation-maximization	1
exploration	1
exponential	1
exponential-models	1
factors	1
factorsgenetics	1
failure	1
family	1
fat-tailed	1
feature-level	1
field-theory	1
fire	1
fluctuation	1
fluorescent	1
fold-change	1
force-field	1
forest	1
formal	1
frequency_modulation	1
frequentist	1
functional_data_analysis	1
gain-control	1
gapdh	1
gastrin	1
gcrma	1
gel	1
gene-design	1
gene-modules	1
gene-networks	1
generality	1
generator	1
gene-set-analysis	1
gene-silencing	1
genetic_engineering	1
genome-assembly	1
geometry	1
glycan	1
glycobiology	1
glycoprotein	1
goodness-of-fit	1
gram-positive	1
h1n1	1
heterologous	1
heuristics	1
high-precision	1
high-resolution	1
high-signal	1
histone	1
ht_sequencing	1
hybridis	1
hybridized	1
hypertension	1
illumina	1
imaging	1
immunohistochemical	1
immunology	1
impact	1
implementation	1
imprinting	1
imputation	1
index	1
indian-buffet-process	1
in-silico	1
integrity	1
interactis	1
interactive	1
intergenic	1
internal	1
intestine	1
intracellular	1
introns	1
invasive	1
java	1
job	1
kinetic-proofreading	1
kinetics	1
knockout	1
lattice	1
level	1
library	1
life	1
likelihood	1
linearization	1
lipid-membrane	1
logistic	1
log-linear	1
lymphocytes	1
machine	1
macroscopic	1
magnitude	1
manova	1
manual	1
masking	1
mathematical-programming	1
maxent	1
mbei	1
mean	1
measurements	1
measures	1
mechanical	1
medianpolish	1
mediation	1
medical_applications	1
membrane-anchored	1
mesh	1
messengerchemistry	1
messengerchemistrymetabolism	1
meta-analysis	1
metagenomics	1
metaheuristics	1
metastatitic	1
method-validation	1
methylome	1
metric	1
metropolis-hastings	1
microarrays	1
microary	1
microbe	1
microscopy	1
microtubule	1
mitosis	1
model-organism	1
modification	1
modulation	1
module-networks	1
molecular_biology	1
molecules	1
monte-carlo	1
morphogenetic	1
morphology	1
mouse	1
movements	1
mrna-expression	1
ms	1
mulitvariate	1
multichip	1
multidimensional	1
multidisciplinary	1
multi-drug	1
multimodal	1
multisource	1
muscle	1
mutual-information	1
myocardiummetabolism	1
myth	1
naive	1
negative	1
neural	1
neural-networks	1
neuroendocrine_tumours	1
non-gaussian	1
normative	1
nucleosome	1
null-distribution	1
object-oriented-data-analysis	1
object-oriented-design	1
of	1
olfaction	1
oligo-capping	1
oligodt	1
oncogenes	1
oral-medicine	1
organic	1
organization-theory	1
organizing	1
organogenesis	1
oriental	1
original	1
orthologous	1
oscillators	1
oxidative	1
parabolic	1
parameter-degeneracy	1
particle	1
pharmacological	1
phenotypes	1
phosphorylation	1
physical-chemistry	1
physico_chemical	1
pioneering	1
platform	1
poisson	1
polya	1
positive	1
precision	1
preconditioning	1
priming	1
primitives	1
principal	1
principles	1
probes	1
probe-selection	1
probeset	1
probe-summarization	1
productivity	1
prognostic	1
program	1
progression	1
proinflammatory	1
project	1
prokaryotes	1
proliferation	1
promoters	1
proof	1
protection	1
proteins	1
protein-translation	1
proteomic	1
protocol	1
protocols	1
psychophysical	1
p-value	1
quantiles	1
quantum-mechanics	1
quasi	1
reactionmethods	1
reaction-systems	1
re-engineering	1
regulator	1
regulatory	1
regulatory-modules	1
reivew	1
research	1
residual-analysis	1
results	1
retention	1
ribosome	1
rna-metabolism	1
rna-regulation	1
robots	1
robustness	1
rt-pcr	1
sample-size	1
scale-free	1
science	1
scientist	1
screening	1
scripting	1
search	1
segmentation	1
self-organization	1
semantic-similarity	1
sequenc	1
sequence-alignment	1
signaling-pathway	1
signal-processing	1
significance	1
similarity_measures	1
single-cell	1
single-molecule	1
single-target	1
sirna	1
sites	1
smell	1
society	1
spatial	1
spatial-scale	1
spatio-temporal	1
spike-in	1
stability	1
standard-care	1
standardization	1
statistical-mechanics	1
stochastic-process	1
stomach	1
streaming	1
streptococcus	1
surgery	1
symmetry	1
synteny	1
systemic	1
t7	1
t7-primer	1
tags	1
teaching	1
technical	1
termination	1
text-mining	1
theorety	1
thesis	1
time-shift	1
top-down	1
transcription-enhancers	1
transcriptionn	1
transduction	1
transitions	1
trees	1
tuberculosis	1
tumors	1
tumour-growth	1
tumour-suppressor	1
turnover	1
uniqueness	1
universal	1
unlabelled	1
variable_selection	1
variance	1
variants	1
vascular	1
vertebratesgenetics	1
viral-infection	1
virtual	1
virtual_human	1
vision	1
warning	1
western	1
wikipedia	1
workflow	1
workflows	1
writing	1
yeast	1

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