bertelsen's clustering [24 articles] Export

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	Averaged gene expressions for regression. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (11 April 2007), pp. 212-227. by Mee Young Y. Park, Trevor Hastie, Robert Tibshirani posted to regression lasso hierarchical gene-expression clustering averaging by bertelsen on 2009-10-06 22:03:32 as along with 1 person jfr
	The Human Transcriptome Map: Clustering of Highly Expressed Genes in Chromosomal Domains [My Copy] Science, Vol. 291, No. 5507. (16 February 2001), pp. 1289-1292. by Huib Caron, Barbera Schaik, Merlijn Mee, et al.Frank Baas, Gregory Riggins, Peter Sluis, Marie-Christine Hermus, Ronald Asperen, Kathy Boon, P. A. Voute, Siem Heisterkamp, Antoine Kampen, Rogier Versteeg posted to gastric-cancer-group transcriptome pioneering map human gene-expression clustering chromosomal-expression by bertelsen on 2009-09-30 17:40:12 as along with 3 people florador jpoyatos Garamonfok
	A Split-Merge Markov Chain Monte Carlo Procedure for the Dirichlet Process Mixture Model [My Copy] Journal of Computational & Graphical Statistics, Vol. 13, No. 1. (March 2004), pp. 158-182. by Sonia Jain, Radford M. Neal posted to sampling model mixture metropolis-hastings mcmc dirichlet-process clustering by bertelsen on 2009-09-25 13:44:21 as along with 3 people churchofbayes vlachmore ldietz
	Including probe-level uncertainty in model-based gene expression clustering [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (21 March 2007), 98. by Xuejun Liu, Kevin Lin, Bogi Andersen, Magnus Rattray posted to uncertainty probe-level model microarray gene-expression clustering bayesian by bertelsen on 2009-09-03 00:23:17 as along with 2 people jfr ghattem
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted to analysis clustering filtering gene-expression network by bertelsen on 2009-06-26 08:59:03 as along with 6 people and 1 group zufar dswan shikin lwaldron rdiaz erexhepa Bioinformatics
	A novel HMM-based clustering algorithm for the analysis of gene expression time-course data [My Copy] Computational Statistics & Data Analysis, Vol. 50, No. 9. (01 May 2006), pp. 2472-2494. by Y. Zeng, J. Garciafrias posted to analysis clustering gene-expression hmm microarray time-course by bertelsen on 2009-06-06 19:57:42 as
	Pattern recognition techniques for the emerging field of bioinformatics: A review [My Copy] Pattern Recognition, Vol. 38, No. 11. (November 2005), pp. 2055-2073. by Alan W. Liew, Hong Yan, Mengsu Yang posted to bioinformatics clustering microarray pattern-recognition pre-processing review sequence-analysis time-series by bertelsen on 2009-06-06 19:39:26 as along with 6 people druvus xtizon eweaver Found Bailey yangxian
	bioNMF: a versatile tool for non-negative matrix factorization in biology [My Copy] BMC Bioinformatics, Vol. 7 (28 July 2006), 366. by Alberto Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M. Carazo, Roberto D. Pascual-Marqui posted to biology clustering matrix-factorization nonnegative software tool by bertelsen on 2009-03-13 14:47:12 as along with 1 person jfr
	Emergent unsupervised clustering paradigms with potential application to bioinformatics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 677-690. by David J. Miller, Yue Wang, George Kesidis posted to bioinformatics clustering unsupervised by bertelsen on 2009-02-15 01:19:05 as along with 6 people meanerelk marti svozil bozdagd VGreiff dps
	Evaluation of gene-expression clustering via mutual information distance measure [My Copy] BMC Bioinformatics, Vol. 8 (30 March 2007), 111. by Ido Priness, Oded Maimon, Irad Ben-Gal posted to clustering comparison distance gene-expression information measure by bertelsen on 2008-11-19 09:44:09 as along with 1 person dragonrez
	Modeling and Visualizing Uncertainty in Gene Expression Clusters using Dirichlet Process Mixtures [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Carl Rasmussen, Bernard, Zoubin Ghahramani, David Wild posted to clustering dirichlet-process expression gene measure microarray modeling uncertainty by bertelsen on 2008-11-17 10:51:51 as
	Statistical models for partial membership [My Copy] In Proceedings of the 25th International Conference on Machine Learning (ICML-2008) (2008) by K. A. Heller, S. Williamson, Z. Ghahramani posted to bayesian clustering multiple by bertelsen on 2008-09-30 21:15:25 as along with 1 person oyen
	Pairwise data clustering by deterministic annealing [My Copy] IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 19 (1997), pp. 1-14. by Thomas Hofmann, Student Member, Joachim M. Buhmann posted to algorithm analysis clustering data exploratory maxent by bertelsen on 2008-09-18 00:32:43 as
	hopach: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) [My Copy] by Katherine, Mark posted to clustering by bertelsen on 2008-07-03 01:33:02 as
	Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework. [My Copy] Artif Intell Med, Vol. 41, No. 2. (October 2007), pp. 105-115. by S. Zhong, D. Xie posted to analysis clustering function gene go hypothesis microarray multiple ontology test time-course by bertelsen on 2008-07-03 01:24:32 as along with 2 people ericvonwettberg guhjy
	Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (31 August 2006), 397. by Susmita Datta, Somnath Datta posted to algorithms clustering evaluation methods by bertelsen on 2008-07-03 01:22:53 as along with 5 people and 1 group colmryan jfr aviad_work ealloza bobychan BioinfoCIPF
	Bayesian biclustering of gene expression data. [My Copy] BMC genomics, Vol. 9 Suppl 1, No. Suppl 1. (2008), S4. by Jiajun Gu, Jun S. Liu posted to bayesian clustering expression gene by bertelsen on 2008-07-03 01:11:36 as along with 9 people meanerelk dolchan marti tonamswish imina tvdbulck jfr yangc dragonrez
	A novel approach for clustering proteomics data using Bayesian fast Fourier transform [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2210-2224. by Halima Bensmail, Jennifer Golek, Michelle M. Moody, John O. Semmes, Abdelali Haoudi posted to bayesian clustering proteomics transformation by bertelsen on 2008-07-03 00:41:50 as
	Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. [My Copy] Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343. by P. C. Boutros, A. B. Okey posted to annotation biology clustering co-expression co-regulation microarray pattern-recognition proteomics review unsupervised by bertelsen on 2008-06-10 20:41:00 as along with 10 people tonamswish bozdagd jfr metamerist tabu samal srfairclough akastrin xili03 renatomilani
	Missing value imputation improves clustering and interpretation of gene expression microarray data [My Copy] BMC Bioinformatics, Vol. 9 (18 April 2008), 202. by Johannes Tuikkala, Laura L. Elo, Olli S. Nevalainen, Tero Aittokallio posted to clustering expression gene imputation microarray by bertelsen on 2008-04-29 21:26:05 as along with 2 people shigepong guhjy
	Clustering of gene expression data using a local shape-based similarity measure. [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1069-1077. by R. Balasubramaniyan, E. Hüllermeier, N. Weskamp, J. Kämper posted to clustering co-regulation microarray by bertelsen on 2007-09-05 10:08:19 as
	In search of functional association from time-series microarray data based on the change trend and level of gene expression. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by F. He, A. P. Zeng posted to clustering gene-regulation microarray time-series by bertelsen on 2007-09-05 10:07:04 as along with 1 person dps
	Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions. [My Copy] J Mol Biol, Vol. 314, No. 5. (14 December 2001), pp. 1053-1066. by J. Qian, M. Dolled-Filhart, J. Lin, H. Yu, M. Gerstein posted to clustering expression local time-shift by bertelsen on 2007-09-05 09:59:09 as
	Comparisons and validation of statistical clustering techniques for microarray gene expression data [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 459-466. by Susmita Datta, Somnath Datta posted to clustering microarray by bertelsen on 2007-09-05 09:57:46 as along with 7 people socwangnan Yanno ujh textoris tvdbulck echsberde dps

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microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
expression	59
networks	59
affymetrix	48
gene	47
software	46
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
modeling	29
pathway	29
disease	29
models	28
rna	27
genechip	27
polyadenylation	26
human	26
drug-discovery	25
gene-regulation	25
clustering	24
oligonucleotide	24
multi-scale	24
ontology	23
biochemical	22
probe	22
inference	21
probability	20
differential	20
transcription	20
degradation	20
mrna	20
molecular	20
factor-analysis	19
dynamic	19
database	19
integrative	18
simulation	18
mathematical	18
stochastic	18
probe-level	18
probabilistic	17
chemical	17
structure	17
integration	16
function	16
kinetic	16
nonparametric	16
computational	16
dirichlet-process	16
statistical	15
genomics	15
experiment	15
sequence	15
high-throughput	15
theory	15
comparison	15
algorithm	15
drug	15
genome	15
sampling	15
r	15
complexity	14
enrichment-analysis	14
protein	14
framework	14
normalization	14
regression	14
prediction	14
python	14
noise	14
gastric	14
array	13
pathways	13
mirna	13
therapy	13
classification	13
statistics	13
personalized-medicine	13
bioconductor	13
interpretation	13
control	13
biochemical-systems-theory	13
go	13
phenotype	13
transcriptome	12
algorithms	12
clinical	12
latent	12
data-integration	12
hierarchical	12
mechanism	12
promoter	12
modules	12
non-protein-coding	11
tumour	11
computational-biology	11
distribution	11
oncogenesis	11
sparse	11
evolution	11
quality	11
integrating	10
systems	10
quantitative	10
test	10
mixture	10
mcmc	10
uncertainty	10
proteomics	10
genetic	10
modular	10
alternative	10
interactions	10
biomedical	10
transcription-factor	9
dna	9
multiple	9
visualization	9
large-scale	9
selection	9
diagnostic	9
biophysics	9
quality-control	9
hypothesis	9
s-system	9
information	9
methodology	9
cell-biology	9
machine-learning	9
discovery	9
insilico	9
3-utr	9
design	9
method	9
therapeutic	9
time-series	8
measure	8
transcripts	8
ica	8
linear	8
methods	8
experimental-design	8
background	8
overview	8
hybridization	8
systemic-computation	8
synthetic-biology	8
heterogeneity	8
rnai	8
utr	8
mapping	7
nonlinear	7
invivo	7
time-course	7
agent-based	7
infection	7
organization	7
translation	7
development	7
specificity	7
pathology	7
tiling	7
physiology	7
gene-set-analysis	7
multivariate	7
binary	7
ontologies	7
webservices	7
pathway-analysis	7
drug-target	7
rats	7
emergent-properties	7
mammalian	6
reactions	6
profiles	6
epigenetic	6
reverse-engineering	6
databases	6
cdna	6
pattern	6
upt	6
computation	6
dynamics	6
feature	6
computing	6
prior	6
scientific	6
thermodynamics	6
processes	6
splicing	6
metabolomics	6
application	6
sequencing	6
graphs	6
tumor	6
chip-chip	6
metabolic-network	6
pre-processing	6
genetics	6
summary	6
rna-seq	6
evolutionary-computation	6
primary	6
matrix-factorization	6
kidney	5
comparative	5
dependence	5
correction	5
membrane	5
import	5
error	5
encode	5
binfbib	5
book	5
sensitivity	5
genome-wide	5
simulations	5
apoptosis	5
variation	5
quantitative-trait-loci	5
invitro	5
process	5
normal	5
cell-cycle	5
physical	5
nonsense-mediated	5
nmd	5
medical	5
baysian	5
identification	5
cell	5
unknown	5
treatment	5
profiling	5
profilingmethods	5
truncated	5
signal	5
time	5
biomarker	5
ncrna	5
environment	5
gibbs	5
measurement	5
synthesis	5
eukaryotic	5
bias	5
pca	5
topological	5
protein-expression	5
optimization	5
quality-assessment	5
gaussian	5
gene-function	5
variational	5
localization	5
false	5
animals	4
sequence-analysis	4
pharmacogenomic	4
mice	4
decay	4
high-dimensional	4
endolymphatic-sac	4
cage	4
ode	4
gastric-cancer-group	4
signals	4
web	4
entropy	4
diversity	4
prognosis	4
mechanistic	4
tissue-specific	4
approximation	4
dynamical-systems	4
steady-state	4
signatures	4
grid	4
nested	4
co-expression	4
mining	4
survey	4
philosophy	4
exons	4
filtering	4
motif	4
global	4
map	4
physics	4
graphical-modelling	4
ordinal	4
signature	4
5-utr	4
power-laws	4
exploratory	4
biomolecular	4
standard	4
transcript	4
transformation	4
post-transcriptional	4
mixtures	4
toxoplasma	4
interface	4
inhibitors	4
inflammation	4
literature	4
inner-ear	4
knowledge-based	4
metabolic-control-analysis	4
local	4
co-regulation	4
circuits	4
guide	4
hybrid	4
estimation	4
dirichlet	3
differentiation	3
model-selection	3
random	3
multinomial	3
resource	3
differential-equation	3
structural-biology	3
dataset	3
chromosomal-expression	3
evaluation	3
chip-seq	3
pattern-recognition	3
affinity	3
component	3
humans	3
repository	3
chemotherapy	3
management	3
snp	3
chromatin	3
fdr	3
generalized	3
distributions	3
metabolic	3
signal-transduction	3
amplification	3
associations	3
nuclear	3
bacteria	3
metastatic	3
identifiability	3
parasitology	3
performance	3
characteristics	3
robust	3
languages	3
adjustment	3
interference	3
correlation	3
combinatorial	3
automatic	3
renormalization-group-analysis	3
stochasticity	3
gene-circuits	3
tumorigenesis	3
affy	3
introduction	3
ranking	3
accuracy	3
nonnegative	3
assessment	3
unsupervised	3
semantic-web	3
enzyme	3
medicine	3
hmm	3
chemical-master-equation	3
reproducibility	3
polymerase	3
independence	3
exchangeability	3
stochastic-resonance	3
natural	3
regulators	3
genes	3
genotyping	3
beta	3
learning	3
perturbation	3
cell-lines	3
modularity	3
histological	3
signaling-system	3
calibration	3
analysismethods	3
alignment	3
resonance	3
cells	2
text-mining	2
sequential	2
target	2
foundations	2
stem-cells	2
rma	2
present_absent_call	2
exon	2
mutations	2
missing-value	2
cox-theorem	2
approximate	2
stress	2
mismatch	2
5	2
generative	2
homologous	2
translational-medicine	2
physiome	2
threshold	2
rate-law	2
false-discovery	2
constraint-based-modelling	2
primer	2
non-specific	2
difference	2
biopython	2
fractal	2
properties	2
gamma	2
poly	2
distance	2
vector	2
acid	2
saturation	2
benchmark	2
user-computer	2
regulatory-modules	2
knowledgebase	2
parts	2
plausibility	2
health	2
plant	2
indian	2
probit	2
miame	2
lung	2
matrix	2
memory	2
t-test	2
pipelines	2
community	2
set	2
buffet	2
mass_spectroscopy	2
copy-number-variation	2
variational-inference	2
phenome	2
cross-platform	2
kullback-leibler	2
nonequilibrium	2
dsrna	2
lasso	2
comment	2
deterministic	2
behaviour	2
perspective	2
heterogeneous	2
preprocessing	2
post-transcription	2
neuroscience	2
mage	2
3	2
cell-migration	2
subcellular	2
pharmacogenomics	2
organ	2
immune-system	2
opensource	2
p-bodies	2
molecular-connectivity-map	2
programming	2
mitochondria	2
chromosome-wide	2
approximations	2
epithelial	2
grid-computing	2
signaling-pathway	2
sage	2
cross-study	2
multi-target	2
proteome	2

bertelsen's clustering [24 articles] Export

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