CiteULike: bertelsen's experiment [15 articles]

	[5] Standards in Gene Expression Microarray Experiments [My Copy] Methods in Enzymology, Vol. 411 (2006), pp. 63-78. by M. Salit posted to standard microarray medicine genomics gene-expression experiment cross-study cross-laboratory by bertelsen on 2009-11-06 15:20:34 as
	Creation and implications of a phenome-genome network. [My Copy] Nature biotechnology, Vol. 24, No. 1. (10 January 2006), pp. 55-62. by Atul J. Butte, Isaac S. Kohane posted to protein-expression phenotype phenome network multi-scale measurements genome gene-expression experiment environment drug-discovery associations by bertelsen on 2009-09-15 20:15:51 as along with 10 people and 2 groups daforerog BioGeek bpb okarsligil balajis wnpx tag elsiatcase eukfn guhjy Bioinformatics metric_embeddings
	From in vivo to in silico biology and back [My Copy] Nature, Vol. 443, No. 7111. (05 October 2006), pp. 527-533. by Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano posted to systems-biology simulations quantitative modelling invivo insilico experiment computational-biology biology by bertelsen on 2009-09-15 16:17:56 as along with 8 people remoteFuture VGreiff aalibes wnpx mmt dbikard jrbanga vietanh0
	Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. [My Copy] Briefings in bioinformatics, Vol. 7, No. 4. (1 December 2006), pp. 364-374. by Natal A. van Riel posted to systems-biology review networks modelling model mechanism experiment dynamic bioinformatics biochemical analysis by bertelsen on 2009-09-01 18:06:51 as along with 4 people and 1 group abhishek_tiwari wnpx raiyar fishtank steinmetzlab
	Probabilistic retrieval and visualization of biologically relevant microarray experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i145-153. by José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski posted to experiment gene-expression microarray probabilistic repository selection tool visualization by bertelsen on 2009-07-04 19:45:24 as along with 6 people jfr ngehlenborg greg ptrobajo guhjy shikin
	[4] Use of External Controls in Microarray Experiments [My Copy] Methods in Enzymology, Vol. 411 (2006), pp. 50-63. by I. Yang posted to analysis control experiment microarray by bertelsen on 2009-06-17 12:45:40 as
	[2] Analyzing Micro‐RNA Expression Using Microarrays [My Copy] Methods in Enzymology, Vol. 411 (2006), pp. 14-34. by T. Davison, C. Johnson, B. Andruss posted to analysis experiment expression microarray mirna by bertelsen on 2009-06-17 10:33:21 as along with 5 people gdb VGreiff shikin giovenko farhat
	High density synthetic oligonucleotide arrays. [My Copy] Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 20-24. by R. J. Lipshutz, S. P. Fodor, T. R. Gingeras, D. J. Lockhart posted to affymetrix array experiment genechip genomics high-throughput microarray oligonucleotide by bertelsen on 2009-06-16 15:21:29 as along with 3 people and 1 group jeremymiller incovoma shikin GeschwindLab
	Sources of variation in Affymetrix microarray experiments. [My Copy] BMC bioinformatics, Vol. 6 (2005) by Stanislav O. Zakharkin, Kyoungmi Kim, Tapan Mehta, et al.Lang Chen, Stephen Barnes, Katherine E. Scheirer, Rudolph S. Parrish, David B. Allison, Grier P. Page posted to affymetrix experiment microarray variation by bertelsen on 2009-06-16 12:01:25 as along with 2 people zufar ghattem
	Directing experimental biology: a case study in mitochondrial biogenesis. [My Copy] PLoS computational biology, Vol. 5, No. 3. (20 March 2009), e1000322. by Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower, et al.David C. Hess, Kai Li, Amy A. Caudy, Olga G. Troyanskaya posted to biology experiment experimental-design machine-learning by bertelsen on 2009-03-31 09:52:19 as along with 3 people and 1 group tmmurali biomcgary ptrobajo Marcotte_Lab
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to analysis analysismethods chip-chip chip-seq control experiment experimental-design by bertelsen on 2009-03-07 22:48:01 as along with 18 people and 1 group hzoltan fpattyn gdb huali ewilban1 fenghezi smiddha jfr JeremyZucker cassj inesdesantiago dakelley ghattem abizar polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	Computational and experimental approaches for modeling gene regulatory networks. [My Copy] Curr Pharm Des, Vol. 13, No. 14. (2007), pp. 1415-1436. by J. Goutsias, N. H. Lee posted to computational experiment functional-genomics gene-regulation microarray modeling networks reverse-engineering review by bertelsen on 2009-03-03 22:44:19 as along with 1 person and 1 group dpollard EisenLab
	ArrayExpress--a public database of microarray experiments and gene expression profiles. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by H. Parkinson, M. Kapushesky, M. Shojatalab, et al.N. Abeygunawardena, R. Coulson, A. Farne, E. Holloway, N. Kolesnykov, P. Lilja, M. Lukk, R. Mani, T. Rayner, A. Sharma, E. William, U. Sarkans, A. Brazma posted to data database experiment functional-genomics gene-expression high-throughput microarray profiles by bertelsen on 2009-02-09 17:37:18 as along with 6 people shikin jfr balajis hpiwowar ghattem tvdbulck
	The T7-primer is a source of experimental bias and introduces variability between microarray platforms. [My Copy] PLoS ONE, Vol. 3, No. 4. (2008) by R. M. Kerkhoven, D. Sie, M. Nieuwland, et al.M. Heimerikx, J. De Ronde, W. Brugman, A. Velds posted to amplification bias experiment microarray t7-primer by bertelsen on 2008-06-05 22:24:15 as along with 1 person jfr
	Microarray analysis: basic strategies for successful experiments. [My Copy] Mol Biotechnol, Vol. 36, No. 3. (July 2007), pp. 205-219. by S. A. Ness posted to basic experiment experimental-design microarray by bertelsen on 2008-04-29 21:35:07 as along with 1 person niallhaslam

bertelsen's experiment [15 articles] Export

bertelsen's tags

microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
expression	59
networks	59
affymetrix	48
gene	47
software	46
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
modeling	29
pathway	29
disease	29
models	28
rna	27
genechip	27
polyadenylation	26
human	26
drug-discovery	25
gene-regulation	25
clustering	24
oligonucleotide	24
multi-scale	24
ontology	23
biochemical	22
probe	22
inference	21
probability	20
differential	20
transcription	20
degradation	20
mrna	20
molecular	20
factor-analysis	19
dynamic	19
database	19
integrative	18
simulation	18
mathematical	18
stochastic	18
probe-level	18
probabilistic	17
chemical	17
structure	17
integration	16
function	16
kinetic	16
nonparametric	16
computational	16
dirichlet-process	16
statistical	15
genomics	15
experiment	15
sequence	15
high-throughput	15
theory	15
comparison	15
algorithm	15
drug	15
genome	15
sampling	15
r	15
complexity	14
enrichment-analysis	14
protein	14
framework	14
normalization	14
regression	14
prediction	14
python	14
noise	14
gastric	14
array	13
pathways	13
mirna	13
therapy	13
classification	13
statistics	13
personalized-medicine	13
bioconductor	13
interpretation	13
control	13
biochemical-systems-theory	13
go	13
phenotype	13
transcriptome	12
algorithms	12
clinical	12
latent	12
data-integration	12
hierarchical	12
mechanism	12
promoter	12
modules	12
non-protein-coding	11
tumour	11
computational-biology	11
distribution	11
oncogenesis	11
sparse	11
evolution	11
quality	11
integrating	10
systems	10
quantitative	10
test	10
mixture	10
mcmc	10
uncertainty	10
proteomics	10
genetic	10
modular	10
alternative	10
interactions	10
biomedical	10
transcription-factor	9
dna	9
multiple	9
visualization	9
large-scale	9
selection	9
diagnostic	9
biophysics	9
quality-control	9
hypothesis	9
s-system	9
information	9
methodology	9
cell-biology	9
machine-learning	9
discovery	9
insilico	9
3-utr	9
design	9
method	9
therapeutic	9
time-series	8
measure	8
transcripts	8
ica	8
linear	8
methods	8
experimental-design	8
background	8
overview	8
hybridization	8
systemic-computation	8
synthetic-biology	8
heterogeneity	8
rnai	8
utr	8
mapping	7
nonlinear	7
invivo	7
time-course	7
agent-based	7
infection	7
organization	7
translation	7
development	7
specificity	7
pathology	7
tiling	7
physiology	7
gene-set-analysis	7
multivariate	7
binary	7
ontologies	7
webservices	7
pathway-analysis	7
drug-target	7
rats	7
emergent-properties	7
mammalian	6
reactions	6
profiles	6
epigenetic	6
reverse-engineering	6
databases	6
cdna	6
pattern	6
upt	6
computation	6
dynamics	6
feature	6
computing	6
prior	6
scientific	6
thermodynamics	6
processes	6
splicing	6
metabolomics	6
application	6
sequencing	6
graphs	6
tumor	6
chip-chip	6
metabolic-network	6
pre-processing	6
genetics	6
summary	6
rna-seq	6
evolutionary-computation	6
primary	6
matrix-factorization	6
kidney	5
comparative	5
dependence	5
correction	5
membrane	5
import	5
error	5
encode	5
binfbib	5
book	5
sensitivity	5
genome-wide	5
simulations	5
apoptosis	5
variation	5
quantitative-trait-loci	5
invitro	5
process	5
normal	5
cell-cycle	5
physical	5
nonsense-mediated	5
nmd	5
medical	5
baysian	5
identification	5
cell	5
unknown	5
treatment	5
profiling	5
profilingmethods	5
truncated	5
signal	5
time	5
biomarker	5
ncrna	5
environment	5
gibbs	5
measurement	5
synthesis	5
eukaryotic	5
bias	5
pca	5
topological	5
protein-expression	5
optimization	5
quality-assessment	5
gaussian	5
gene-function	5
variational	5
localization	5
false	5
animals	4
sequence-analysis	4
pharmacogenomic	4
mice	4
decay	4
high-dimensional	4
endolymphatic-sac	4
cage	4
ode	4
gastric-cancer-group	4
signals	4
web	4
entropy	4
diversity	4
prognosis	4
mechanistic	4
tissue-specific	4
approximation	4
dynamical-systems	4
steady-state	4
signatures	4
grid	4
nested	4
co-expression	4
mining	4
survey	4
philosophy	4
exons	4
filtering	4
motif	4
global	4
map	4
physics	4
graphical-modelling	4
ordinal	4
signature	4
5-utr	4
power-laws	4
exploratory	4
biomolecular	4
standard	4
transcript	4
transformation	4
post-transcriptional	4
mixtures	4
toxoplasma	4
interface	4
inhibitors	4
inflammation	4
literature	4
inner-ear	4
knowledge-based	4
metabolic-control-analysis	4
local	4
co-regulation	4
circuits	4
guide	4
hybrid	4
estimation	4
dirichlet	3
differentiation	3
model-selection	3
random	3
multinomial	3
resource	3
differential-equation	3
structural-biology	3
dataset	3
chromosomal-expression	3
evaluation	3
chip-seq	3
pattern-recognition	3
affinity	3
component	3
humans	3
repository	3
chemotherapy	3
management	3
snp	3
chromatin	3
fdr	3
generalized	3
distributions	3
metabolic	3
signal-transduction	3
amplification	3
associations	3
nuclear	3
bacteria	3
metastatic	3
identifiability	3
parasitology	3
performance	3
characteristics	3
robust	3
languages	3
adjustment	3
interference	3
correlation	3
combinatorial	3
automatic	3
renormalization-group-analysis	3
stochasticity	3
gene-circuits	3
tumorigenesis	3
affy	3
introduction	3
ranking	3
accuracy	3
nonnegative	3
assessment	3
unsupervised	3
semantic-web	3
enzyme	3
medicine	3
hmm	3
chemical-master-equation	3
reproducibility	3
polymerase	3
independence	3
exchangeability	3
stochastic-resonance	3
natural	3
regulators	3
genes	3
genotyping	3
beta	3
learning	3
perturbation	3
cell-lines	3
modularity	3
histological	3
signaling-system	3
calibration	3
analysismethods	3
alignment	3
resonance	3
cells	2
text-mining	2
sequential	2
target	2
foundations	2
stem-cells	2
rma	2
present_absent_call	2
exon	2
mutations	2
missing-value	2
cox-theorem	2
approximate	2
stress	2
mismatch	2
5	2
generative	2
homologous	2
translational-medicine	2
physiome	2
threshold	2
rate-law	2
false-discovery	2
constraint-based-modelling	2
primer	2
non-specific	2
difference	2
biopython	2
fractal	2
properties	2
gamma	2
poly	2
distance	2
vector	2
acid	2
saturation	2
benchmark	2
user-computer	2
regulatory-modules	2
knowledgebase	2
parts	2
plausibility	2
health	2
plant	2
indian	2
probit	2
miame	2
lung	2
matrix	2
memory	2
t-test	2
pipelines	2
community	2
set	2
buffet	2
mass_spectroscopy	2
copy-number-variation	2
variational-inference	2
phenome	2
cross-platform	2
kullback-leibler	2
nonequilibrium	2
dsrna	2
lasso	2
comment	2
deterministic	2
behaviour	2
perspective	2
heterogeneous	2
preprocessing	2
post-transcription	2
neuroscience	2
mage	2
3	2
cell-migration	2
subcellular	2
pharmacogenomics	2
organ	2
immune-system	2
opensource	2
p-bodies	2
molecular-connectivity-map	2
programming	2
mitochondria	2
chromosome-wide	2
approximations	2
epithelial	2
grid-computing	2
signaling-pathway	2
sage	2
cross-study	2
multi-target	2
proteome	2