CiteULike: bertelsen's framework [14 articles]

A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks

BMC Bioinformatics, Vol. 10, No. Suppl 12. (2009), S14.

posted to systems-biology simulation qualitative nonlinear networks models gene-regulation framework dynamical-systems computational by bertelsen on 2009-11-30 11:54:45 as

Information theory provides a comprehensive framework for the evaluation of protein structure predictions.

Proteins, Vol. 74, No. 3. (15 February 2009), pp. 701-711.

by Rosemarie Swanson, Marina Vannucci, Jerry W. Tsai

posted to theory structural-biology similarity_measures protein prediction information framework by bertelsen on 2009-11-18 20:39:06 as

Object oriented data analysis: Sets of trees

Annals of Statistics, Vol. 35, No. 5. (2007), pp. 1849-1873.

by Haonan Wang, J. S. Marron

posted to trees statistical pca object-oriented-data-analysis mathematical functional_data_analysis framework by bertelsen on 2009-10-04 01:39:04 as

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

PLoS Comput Biol, Vol. 5, No. 7. (3 July 2009), e1000431.

by The Reference Genome Group of the Gene Ontology Consortium

Systemic computation: A model of interacting systems with natural characteristics

International Journal of Parallel, Emergent and Distributed Systems, Vol. 22, No. 2. (2007), pp. 103-121.

by Peter J. Bentley

posted to theory systems systemic-computation simulations neural-networks natural modelling interactions framework evolutionary-computation computational-biology computation algorithms by bertelsen on 2009-09-06 10:18:21 as

Integration from proteins to organs: the Physiome Project.

Nature reviews. Molecular cell biology, Vol. 4, No. 3. (March 2003), pp. 237-243.

by Peter J. Hunter, Thomas K. Borg

posted to systems-biology review multi-scale integrative hypothesis human framework biophysics biochemical anatomy by bertelsen on 2009-09-05 10:51:25 as

along with 2 people jonathancooper danlea

Analysis of a generic model of eukaryotic cell-cycle regulation.

Biophysical journal, Vol. 90, No. 12. (15 June 2006), pp. 4361-4379.

by Attila Csikász-Nagy, Dorjsuren Battogtokh, Katherine C. Chen, Béla Novák, John J. Tyson

posted to theorety regulation ode network modular model framework eukaryotic dynamic cell-cycle bifurcation analysis by bertelsen on 2009-09-04 23:21:33 as

along with 4 people kokphinchooi johncumbers jbchang Petersarkies

A systems-theoretical framework for health and disease: Inflammation and preconditioning from an abstract modeling point of view

Mathematical Biosciences, Vol. 217, No. 1. (January 2009), pp. 11-18.

by E. Voit

posted to theory systems-biology s-system preconditioning personalized-medicine modeling inflammation health framework disease biochemical-systems-theory by bertelsen on 2009-09-01 16:03:19 as

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)

Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.

by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein

Bayesian Experimental Design: A Review

Statistical Science, Vol. 10, No. 3. (1995), pp. 273-304.

by Kathryn Chaloner, Isabella Verdinelli

posted to bayesian experimental-design framework review by bertelsen on 2009-07-25 00:30:20 as

A normative framework for agent-based systems

Computational & Mathematical Organization Theory, Vol. 12, No. 2. (1 October 2006), pp. 227-250.

by Fabiola López, Michael Luck, Mark D’inverno

posted to systemic-computation agent-based computational formal framework implementation mathematical model normative organization-theory reasoning society systems by bertelsen on 2009-07-11 00:31:08 as

along with 3 people thegoose locatellimp yaxu

A framework for gene expression analysis

Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 191-197.

by Andreas W. Schreiber, Ute Baumann

posted to analysis framework gene-expression perturbation systems-biology by bertelsen on 2009-06-12 19:37:32 as

along with 1 person bedo

A general framework for weighted gene co-expression network analysis.

Statistical applications in genetics and molecular biology, Vol. 4, No. 1. (2005)

by Bin Zhang, Steve Horvath

posted to analysis co-expression framework networks topological by bertelsen on 2009-05-05 13:16:25 as

along with 9 people and 1 group nicholso rdiaz cswinburne druvus pengchy kengg jeremymiller natstreet jo_davies GeschwindLab

A framework for evolutionary systems biology

BMC Systems Biology, Vol. 3, No. 1. (2009), 27.

by Laurence Loewe

	A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 12. (2009), S14. by Liliana Ironi, Luigi Panzeri posted to systems-biology simulation qualitative nonlinear networks models gene-regulation framework dynamical-systems computational by bertelsen on 2009-11-30 11:54:45 as
	Information theory provides a comprehensive framework for the evaluation of protein structure predictions. [My Copy] Proteins, Vol. 74, No. 3. (15 February 2009), pp. 701-711. by Rosemarie Swanson, Marina Vannucci, Jerry W. Tsai posted to theory structural-biology similarity_measures protein prediction information framework by bertelsen on 2009-11-18 20:39:06 as
	Object oriented data analysis: Sets of trees [My Copy] Annals of Statistics, Vol. 35, No. 5. (2007), pp. 1849-1873. by Haonan Wang, J. S. Marron posted to trees statistical pca object-oriented-data-analysis mathematical functional_data_analysis framework by bertelsen on 2009-10-04 01:39:04 as
	The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (3 July 2009), e1000431. by The Reference Genome Group of the Gene Ontology Consortium posted to ontology gene-function functional-genomics framework annotation by bertelsen on 2009-09-15 19:28:24 as along with 20 people and 2 groups Zephyrus rdiaz ptrobajo fgibson NickFurnham guhjy VGreiff cabbagesofdoom Keywan druvus natstreet gjuggler biomcgary polivares tfuji dswan kiekyon TRHvidsten djkt daforerog Bioinformatics Journal picks
	Systemic computation: A model of interacting systems with natural characteristics [My Copy] International Journal of Parallel, Emergent and Distributed Systems, Vol. 22, No. 2. (2007), pp. 103-121. by Peter J. Bentley posted to theory systems systemic-computation simulations neural-networks natural modelling interactions framework evolutionary-computation computational-biology computation algorithms by bertelsen on 2009-09-06 10:18:21 as
	Integration from proteins to organs: the Physiome Project. [My Copy] Nature reviews. Molecular cell biology, Vol. 4, No. 3. (March 2003), pp. 237-243. by Peter J. Hunter, Thomas K. Borg posted to systems-biology review multi-scale integrative hypothesis human framework biophysics biochemical anatomy by bertelsen on 2009-09-05 10:51:25 as along with 2 people jonathancooper danlea
	Analysis of a generic model of eukaryotic cell-cycle regulation. [My Copy] Biophysical journal, Vol. 90, No. 12. (15 June 2006), pp. 4361-4379. by Attila Csikász-Nagy, Dorjsuren Battogtokh, Katherine C. Chen, Béla Novák, John J. Tyson posted to theorety regulation ode network modular model framework eukaryotic dynamic cell-cycle bifurcation analysis by bertelsen on 2009-09-04 23:21:33 as along with 4 people kokphinchooi johncumbers jbchang Petersarkies
	A systems-theoretical framework for health and disease: Inflammation and preconditioning from an abstract modeling point of view [My Copy] Mathematical Biosciences, Vol. 217, No. 1. (January 2009), pp. 11-18. by E. Voit posted to theory systems-biology s-system preconditioning personalized-medicine modeling inflammation health framework disease biochemical-systems-theory by bertelsen on 2009-09-01 16:03:19 as
	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted to systems-biology gene-function functional-genomics framework data-integration bayesian by bertelsen on 2009-08-14 10:49:04 as along with 21 people and 2 groups phoenixzxl ruichu bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia kallberg isimpson carlk srp33 frohike kdl Bioinformatics
	Bayesian Experimental Design: A Review [My Copy] Statistical Science, Vol. 10, No. 3. (1995), pp. 273-304. by Kathryn Chaloner, Isabella Verdinelli posted to bayesian experimental-design framework review by bertelsen on 2009-07-25 00:30:20 as
	A normative framework for agent-based systems [My Copy] Computational & Mathematical Organization Theory, Vol. 12, No. 2. (1 October 2006), pp. 227-250. by Fabiola López, Michael Luck, Mark D’inverno posted to systemic-computation agent-based computational formal framework implementation mathematical model normative organization-theory reasoning society systems by bertelsen on 2009-07-11 00:31:08 as along with 3 people thegoose locatellimp yaxu
	A framework for gene expression analysis [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 191-197. by Andreas W. Schreiber, Ute Baumann posted to analysis framework gene-expression perturbation systems-biology by bertelsen on 2009-06-12 19:37:32 as along with 1 person bedo
	A general framework for weighted gene co-expression network analysis. [My Copy] Statistical applications in genetics and molecular biology, Vol. 4, No. 1. (2005) by Bin Zhang, Steve Horvath posted to analysis co-expression framework networks topological by bertelsen on 2009-05-05 13:16:25 as along with 9 people and 1 group nicholso rdiaz cswinburne druvus pengchy kengg jeremymiller natstreet jo_davies GeschwindLab
	A framework for evolutionary systems biology [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 27. by Laurence Loewe posted to evolution framework insilico mutations systems-biology by bertelsen on 2009-03-05 15:33:15 as along with 16 people and 1 group tomhebbron pawelsobko leemond31 maren gwenknight Scis0000002 agomez dswan JeremyZucker JoeDunckley Zephyrus michaelbarton trfield jjray VGreiff druvus Roswell Cancer Crosstalk

bertelsen's framework [14 articles] Export

bertelsen's tags

microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
networks	59
expression	59
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gene	47
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