bertelsen's gene-expression [122 articles] Export

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	[5] Standards in Gene Expression Microarray Experiments [My Copy] Methods in Enzymology, Vol. 411 (2006), pp. 63-78. by M. Salit posted to standard microarray medicine genomics gene-expression experiment cross-study cross-laboratory by bertelsen on 2009-11-06 15:20:34 as
	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D868-872. by Helen Parkinson, Misha Kapushesky, Nikolay Kolesnikov, et al.Gabriella Rustici, Mohammad Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Z. Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna G. Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma posted to rna-seq repository microarray gene-expression functional-genomics database atlas by bertelsen on 2009-11-05 22:40:22 as along with 9 people ptrobajo daforerog guhjy samfromklamart vkwn Borelli jfr kittipat abizar
	P bodies: at the crossroads of post-transcriptional pathways [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 1. (01 January 2007), pp. 9-22. by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde posted to review regulation post-transcriptional pathways p-bodies mrna localization gene-expression cytoplasmic cell-biology by bertelsen on 2009-10-07 23:24:55 as along with 3 people and 2 groups xico margaritis lzhonsailing Neuroscience WetBiology
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [My Copy] Nat Genet, Vol. 34, No. 2. (11 May 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to regulatory-modules regulators regulation original networks module-networks modular gene-expression by bertelsen on 2009-10-06 23:03:41 as along with 25 people and 1 group stharward ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
	Averaged gene expressions for regression. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (11 April 2007), pp. 212-227. by Mee Young Y. Park, Trevor Hastie, Robert Tibshirani posted to regression lasso hierarchical gene-expression clustering averaging by bertelsen on 2009-10-06 22:03:32 as along with 1 person jfr
	An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer [My Copy] Breast Cancer Research, Vol. 11, No. 4. (28 July 2009), R55. by Andrea Bild, Joel Parker, Adam Gustafson, et al.Chaitanya Acharya, Katherine Hoadley, Carey Anders, P. Kelly Marcom, Lisa Carey, Anil Potti, Joseph Nevins, Charles Perou posted to tumour therapy phenotype pathway-analysis integration gene-expression drug-discovery chemotherapy cancer by bertelsen on 2009-10-06 21:37:06 as along with 1 person srp33
	Probing noise in gene expression and protein production [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 3. (2009), 031916. by Sandro Azaele, Jayanth R. Banavar, Amos Maritan posted to time systems-biology protein-expression noise models modelling gene-expression dynamics cell-population by bertelsen on 2009-10-06 21:00:47 as along with 2 people docv jjray
	Utilization of genomic signatures to direct use of primary chemotherapy. [My Copy] Current opinion in genetics & development, Vol. 18, No. 1. (February 2008), pp. 62-67. by Anil Potti, Joseph R. Nevins posted to therapy signatures review gene-expression clinical cancer by bertelsen on 2009-10-06 20:57:01 as
	Gene expression phenotypic models that predict the activity of oncogenic pathways. [My Copy] Nature genetics. , Vol. 34, No. 2. (June 2003), pp. 226-230. by Erich Huang, Seiichi Ishida, Jennifer Pittman, et al.Holly Dressman, Andrea Bild, Mark Kloos, Mark D'Amico, Richard G. Pestell, Mike West, Joseph R. Nevins posted to phenotypes pathways oncogenesis models microarray gene-expression by bertelsen on 2009-10-05 23:57:33 as along with 1 person balicea
	Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. [My Copy] JAMA : the journal of the American Medical Association, Vol. 299, No. 13. (2 April 2008), pp. 1574-1587. by Chaitanya R. Acharya, David S. Hsu, Carey K. Anders, et al.Ariel Anguiano, Kelly H. Salter, Kelli S. Walters, Richard C. Redman, Sascha A. Tuchman, Cynthia A. Moylan, Sayan Mukherjee, William T. Barry, Holly K. Dressman, Geoffrey S. Ginsburg, Kelly P. Marcom, Katherine S. Garman, Gary H. Lyman, Joseph R. Nevins, Anil Potti posted to signature personalized-medicine pathology gene-expression clinical cancer by bertelsen on 2009-10-04 12:12:42 as along with 4 people ptrobajo Zephyrus jfr guhjy
	Theory and Limitations of Genetic Network Inference from Microarray Data [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference. (December 2007), pp. 51-72. by Adam A. Margolin, O. Andrea Califan posted to theory statistical review reverse-engineering network microarray latent inference genetic gene-expression dependence by bertelsen on 2009-09-30 18:01:54 as along with 2 people talponer roys
	Factor analysis for gene regulatory networks and transcription factor activity profiles. [My Copy] BMC bioinformatics, Vol. 8 (23 February 2007), 61. by Iosifina Pournara, Lorenz Wernisch posted to transcription-factor sparse networks gene-regulation gene-expression factor-analysis by bertelsen on 2009-09-30 17:58:28 as along with 9 people ptrobajo isimpson akastrin guhjy shigepong lp2 hms kyriakos heliopais
	The Human Transcriptome Map: Clustering of Highly Expressed Genes in Chromosomal Domains [My Copy] Science, Vol. 291, No. 5507. (16 February 2001), pp. 1289-1292. by Huib Caron, Barbera Schaik, Merlijn Mee, et al.Frank Baas, Gregory Riggins, Peter Sluis, Marie-Christine Hermus, Ronald Asperen, Kathy Boon, P. A. Voute, Siem Heisterkamp, Antoine Kampen, Rogier Versteeg posted to gastric-cancer-group transcriptome pioneering map human gene-expression clustering chromosomal-expression by bertelsen on 2009-09-30 17:40:12 as along with 3 people florador jpoyatos Garamonfok
	A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666. by A. Callegaro, D. Basso, S. Bicciato posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to models microarray linear gene-expression differential bioconductor analysis by bertelsen on 2009-09-28 17:02:00 as along with 17 people and 1 group jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Stew ihpark giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context. [My Copy] BMC bioinformatics, Vol. 8 (02 June 2007), 179. by Markus Weniger, Julia C. Engelmann, Jörg Schultz posted to webservices visualization tool software proteomics pathways metabolic integration genomics gene-expression functional-genomics analysis by bertelsen on 2009-09-28 15:54:07 as along with 10 people and 1 group barriot daforerog udivi GeeSharpMinor guhjy jfr rdiaz ealloza frohike fmenolascina BioinfoCIPF
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted to test statistical set methodology gene-expression gene enrichment-analysis by bertelsen on 2009-09-28 15:26:19 as along with 17 people and 3 groups srp33 jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar ghattem jfr ealloza shigepong heliopais guhjy diging_data SIMR bioinformatics BioinfoCIPF BTS-PT-AS-CS
	Applications of a rat multiple tissue gene expression data set. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 742-749. by John R. Walker, Andrew I. Su, David W. Self, et al.John B. Hogenesch, Hilmar Lapp, Rainer Maier, Daniel Hoyer, Graeme Bilbe posted to tissue-specific rats quantitative-trait-loci phenotype microarray gene-expression gene functional-genomics co-expression annotation by bertelsen on 2009-09-28 13:52:43 as along with 2 people grahamc eukfn
	Ontological analysis of gene expression data: current tools, limitations, and open problems [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595. by Purvesh Khatri, Sorin Draghici posted to tool review ontologies microarray gene-expression enrichment-analysis comparison analysis by bertelsen on 2009-09-27 20:19:00 as along with 17 people and 1 group jperkins ipark-kaist gjuggler isakemal Stew shikin diamantis Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck Bioinformatics - CRUK
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted to tool review pathways pathway-analysis microarray integration gene-expression enrichment-analysis analysis by bertelsen on 2009-09-27 20:16:12 as along with 11 people and 2 groups thomaskelder udivi AlexanderPico jfr saman_vp snuppepuppan textoris Ayest tardigrade ealloza heliopais ConklinLab BioinfoCIPF
	Methods for interpreting lists of affected genes obtained in a DNA microarray experiment. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Jakob Hedegaard, Cristina Arce, Silvio Bicciato, et al.Agnès Bonnet, Bart Buitenhuis, Melania Collado-Romero, Lene N. Conley, Magali Sancristobal, Francesco Ferrari, Juan J. Garrido, Martien Am A. Groenen, Henrik Hornshøj, Ina Hulsegge, Li Jiang, Angeles Jiménez-Marín, Arun Kommadath, Sandrine Lagarrigue, Jack Am A. Leunissen, Laurence Liaubet, Pieter Bt B. Neerincx, Haisheng Nie, Jan van der Poel, Dennis Prickett, María Ramirez-Boo, Johanna Mj M. Rebel, Christèle Robert-Granié, Axel Skarman, Mari A. Smits, Peter Sørensen, Gwenola Tosser-Klopp, Michael Watson posted to microarray interpretation gene-expression enrichment-analysis biology annotation by bertelsen on 2009-09-27 19:53:52 as
	FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions [My Copy] Genome Biology, Vol. 10, No. 4. (2009), R39. by Jessica Severin, Andrew Waterhouse, Hideya Kawaji, et al.Timo Lassmann, Erik van Nimwegen, Piotr Balwierz, Michiel de Hoon, David Hume, Piero Carninci, Yoshihide Hayashizaki, Harukazu Suzuki, Carsten Daub, Alistair Forrest posted to transcription-factor transcription software regulator promoters network mirna integrating gene-regulation gene-expression database by bertelsen on 2009-09-27 16:12:38 as along with 9 people Garamonfok rdiaz YukaH ealloza guhjy pengchy natstreet druvus dolchan
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to yeast transcription-factor stochastic nuclear localization gene-regulation gene-expression frequency_modulation eukaryotic coordination by bertelsen on 2009-09-25 12:12:45 as along with 8 people and 1 group ellarond siebert dpollard erel10 inesdesantiago raik caseybrown jjray RockmanLab
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted to protein-expression promoter noise networks gene-regulation gene-expression by bertelsen on 2009-09-25 11:56:56 as along with 18 people and 2 groups genocad Scis0000002 raik rklancer snuppepuppan guhjy okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard nklee tmmurali Bioinformatics SynBioSys
	Combinatorial promoter design for engineering noisy gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12726-12731. by Kevin F. Murphy, GÃ¡bor BalÃ¡zsi, James J. Collins posted to synthetic-biology promoter noise gene-expression combinatorial by bertelsen on 2009-09-25 11:48:16 as along with 2 people jjray margaritis
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to systems-biology statistical pathway ontologies magnitude interactions gene-expression functional-genomics analysis by bertelsen on 2009-09-21 16:27:22 as along with 22 people and 2 groups zufar tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Bacteria as computers making computers [My Copy] FEMS Microbiology Reviews, Vol. 33, No. 1. (January 2009), pp. 3-26. by Antoine Danchin posted to systems-biology networks molecular_biology information gene-expression computation bacteria by bertelsen on 2009-09-21 16:05:46 as along with 6 people and 1 group MurphysLab marcio druvus Borelli jjray dbikard Synthetic Biology
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to reverse-engineering microarray gene-regulation gene-networks gene-expression by bertelsen on 2009-09-20 23:02:48 as along with 34 people and 3 groups nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Cancer systems biology: exploring cancer-associated genes on cellular networks. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 64, No. 14. (July 2007), pp. 1752-1762. by E. Wang, A. Lenferink, M. O'Connor-McCourt posted to systems-biology review networks gene-expression cellular-networks cancer by bertelsen on 2009-09-15 21:18:24 as along with 3 people and 2 groups jfr ealloza diging_data BioinfoCIPF BTS-PT-AS-CS
	A module map showing conditional activity of expression modules in cancer. [My Copy] Nature genetics, Vol. 36, No. 10. (October 2004), pp. 1090-1098. by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev posted to tumors therapeutic prognostic modules microarray integration gene-expression diagnostic cancer by bertelsen on 2009-09-15 20:51:43 as along with 7 people and 1 group ipark-kaist saman_vp lwaldron jimineep ladygoat balajis nirfriedman CGREL
	Creation and implications of a phenome-genome network. [My Copy] Nature biotechnology, Vol. 24, No. 1. (10 January 2006), pp. 55-62. by Atul J. Butte, Isaac S. Kohane posted to protein-expression phenotype phenome network multi-scale measurements genome gene-expression experiment environment drug-discovery associations by bertelsen on 2009-09-15 20:15:51 as along with 10 people and 2 groups daforerog BioGeek bpb okarsligil balajis wnpx tag elsiatcase eukfn guhjy Bioinformatics metric_embeddings
	Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000450. by Jiao Li, Xiaoyan Zhu, Jake Y. Chen posted to molecular-connectivity-map therapeutic systems-biology networks molecular mining interactions integration gene-expression functional-genomics drug-discovery drug disease computational-biology biomolecular abstracts by bertelsen on 2009-09-15 19:51:37 as along with 8 people and 2 groups ptrobajo apocapoc andrewclegg NickFurnham guhjy kshameer mingzhi frohike Journal picks Orengo Group Journal Picks
	A Truly Broad View of Gene Expression Spotlights Evolution and Diversity [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e18. posted to gene-expression functional-genomics evolution diversity annotation by bertelsen on 2009-09-09 14:55:34 as
	Similarities and Differences in Genome-Wide Expression Data of Six Organisms [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e9. by Sven Bergmann, Jan Ihmels, Naama Barkai posted to sequence microarray genome-wide gene-expression functional-genomics comparative annotation by bertelsen on 2009-09-09 14:52:38 as along with 10 people and 3 groups thegoose2 floatingpoint roys tharris dragonrez Ayest RMGraze marcius koller jeremymiller C. elegans / WormBase BioinfoCIPF SGU-CIPF
	You're one in a googol: optimizing genes for protein expression [My Copy] Journal of The Royal Society Interface, Vol. 6, No. Suppl 4. (6 August 2009), pp. S467-S476. by Mark Welch, Alan Villalobos, Claes Gustafsson, Jeremy Minshull posted to synthetic-biology review protein-expression gene-expression gene-design gene algorithms by bertelsen on 2009-09-05 18:03:19 as along with 2 people ts3435 antonkratz
	The Infinite Hierarchical Factor Regression Model [My Copy] In Advances in Neural Information Processing Systems 21 (2009), pp. 1321-1328. by Piyush Rai, Hal Daume edited by D. Koller, D. Schuurmans, Y. Bengio, L. Bottou posted to uncertainty regression nonparametric linear hierarchical gene-expression factor-analysis baysian by bertelsen on 2009-09-04 19:46:23 as
	Living with noisy genes: how cells function reliably with inherent variability in gene expression. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 36 (2007), pp. 413-434. by Narendra Maheshri, Erin K. O'Shea posted to systems-biology stochastic review noise gene-expression examples by bertelsen on 2009-09-03 18:49:23 as along with 6 people guhjy Zephyrus marcio jjray madhadron margaritis
	A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 103. by Bor S. Chen, Yu T. Chang posted to systems-biology synthetic-biology stochastic-process stochastic noise networks method gene-expression gene-circuits drug-discovery design biochemical by bertelsen on 2009-09-03 17:57:24 as along with 3 people Synthetic_Biology_Literature behindtherabbit ullahmukhtar
	Design principles for elementary gene circuits: Elements, methods, and examples. [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 11, No. 1. (March 2001), pp. 142-159. by Michael A. A. Savageau posted to review networks gene-expression gene-circuits function design biochemical-systems-theory by bertelsen on 2009-09-03 17:54:16 as along with 4 people and 1 group rklancer macowell monod jjray BUiGEM
	Dynamic modeling of gene expression data [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 4. (13 February 2001), pp. 1693-1698. by Neal S. Holter, Amos Maritan, Marek Cieplak, Nina V. Fedoroff, Jayanth R. Banavar posted to translation time-course prediction networks modeling linear gene-expression dynamic by bertelsen on 2009-09-03 16:16:51 as
	Dynamic modeling of genetic networks using genetic algorithm and S-system [My Copy] Bioinformatics, Vol. 19, No. 5. (22 March 2003), pp. 643-650. by Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita posted to time-course s-system networks modeling genetic gene-expression evolutionary-computation dynamic by bertelsen on 2009-09-03 15:53:33 as
	Including probe-level uncertainty in model-based gene expression clustering [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (21 March 2007), 98. by Xuejun Liu, Kevin Lin, Bogi Andersen, Magnus Rattray posted to uncertainty probe-level model microarray gene-expression clustering bayesian by bertelsen on 2009-09-03 00:23:17 as along with 2 people jfr ghattem
	Multivariate analysis of noise in genetic regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 229, No. 4. (August 2004), pp. 501-521. by R. Tomioka posted to systems-biology stochastic networks multivariate genetic gene-regulation gene-expression analysis by bertelsen on 2009-09-01 20:48:07 as along with 2 people ryotat Dangerfc
	Enabling personalized cancer medicine through analysis of gene-expression patterns [My Copy] Nature, Vol. 452, No. 7187. (3 April 2008), pp. 564-570. by Laura J. van 'T Veer, Rene Bernards posted to personalized-medicine gene-expression cancer analysis by bertelsen on 2009-08-26 22:44:47 as along with 4 people and 1 group Zephyrus reyez jfr raiyar Roswell Cancer Crosstalk
	Prediction of regulatory elements. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 453 (2008), pp. 233-244. by Albin Sandelin posted to regulation promoter prediction guide gene-expression analysis by bertelsen on 2009-08-25 21:44:04 as
	Human disease-drug network based on genomic expression profiles. [My Copy] PloS one, Vol. 4, No. 8. (6 August 2009), e6536. by Guanghui Hu, Pankaj Agarwal posted to profiles human gene-expression drug-discovery drug disease database by bertelsen on 2009-08-25 11:00:53 as along with 4 people ipark-kaist installe phoenixzxl frohike
	Bayesian sparse hidden components analysis for transcription regulation networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 6. (15 March 2006), pp. 739-746. by Chiara Sabatti, Gareth M. James posted to bayesian factor-analysis gene-expression integrative networks regulation sparse systems-biology transcription by bertelsen on 2009-08-10 00:27:12 as along with 4 people engelhardt lp2 hms edwardmorrissey
	Limma: linear models for microarray data. [My Copy] In Bioinformatics and Computational Biology Solutions using R and Bioconductor (2005), pp. 397-420. by G. K. Smyth edited by R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, W. Huber posted to analysis bioconductor gene-expression linear microarray model by bertelsen on 2009-07-27 10:54:12 as along with 2 people and 1 group coela giovanni GeschwindLab
	Expression Profiler: next generation--an online platform for analysis of microarray data [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W465-470. by Misha Kapushesky, Patrick Kemmeren, Aedin C. Culhane, et al.Steffen Durinck, Jan Ihmels, Christine Korner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma posted to analysis gene-expression microarray tool webservices by bertelsen on 2009-07-27 10:41:21 as along with 4 people pengchy rdiaz fisherp siebert
	Cancer biology: Signatures guide drug choice [My Copy] Nature, Vol. 439, No. 7074. (19 January 2006), pp. 274-275. by Julian Downward posted to biology cancer drug drug-discovery gene-expression signature tumour by bertelsen on 2009-07-24 21:11:57 as along with 2 people and 1 group guhjy julius SysbioMPI-TCells

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microarray	216
analysis	129
gene-expression	122
review	118
systems-biology	93
bayesian	90
cancer	66
expression	59
networks	54
affymetrix	48
gene	45
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software	42
functional-genomics	41
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biology	39
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network	37
regulation	37
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modelling	32
modeling	29
bioinformatics	28
disease	27
genechip	27
pathway	27
rna	27
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polyadenylation	26
human	25
clustering	24
biochemical	22
drug-discovery	22
oligonucleotide	22
probe	22
gene-regulation	21
inference	21
ontology	21
degradation	20
mrna	20
multi-scale	20
probability	20
transcription	20
differential	19
dynamic	19
factor-analysis	19
database	18
integrative	18
probe-level	18
stochastic	18
chemical	17
dirichlet-process	16
function	16
kinetic	16
mathematical	16
molecular	16
nonparametric	16
drug	15
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genome	15
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r	15
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python	14
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simulation	14
statistical	14
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gastric	13
go	13
mirna	13
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array	12
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hierarchical	12
interpretation	12
latent	12
mechanism	12
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promoter	12
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computational-biology	11
distribution	11
non-protein-coding	11
pathways	11
phenotype	11
quality	11
sparse	11
therapy	11
alternative	10
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evolution	10
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modular	10
oncogenesis	10
protein	10
proteomics	10
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uncertainty	10
3-utr	9
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clinical	9
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design	9
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genetic	9
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large-scale	9
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mcmc	9
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mixture	9
quality-control	9
selection	9
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systems	9
therapeutic	9
visualization	9
cell-biology	8
dna	8
experimental-design	8
hybridization	8
ica	8
information	8
insilico	8
interactions	8
measure	8
methodology	8
multiple	8
overview	8
personalized-medicine	8
synthetic-biology	8
systemic-computation	8
time-series	8
transcription-factor	8
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background	7
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false	5
gaussian	5
gene-function	5
genome-wide	5
gibbs	5
identification	5
import	5
infection	5
kidney	5
localization	5
measurement	5
membrane	5
metabolic-network	5
ncrna	5
nmd	5
nonsense-mediated	5
normal	5
optimization	5
pattern	5
pca	5
physical	5
primary	5
prior	5
process	5
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protein-expression	5
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sensitivity	5
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splicing	5
synthesis	5
thermodynamics	5
time	5
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treatment	5
truncated	5
variation	5
variational	5
5-utr	4
animals	4
approximation	4
biomolecular	4
cage	4
chip-chip	4
circuits	4
co-expression	4
co-regulation	4
decay	4
diversity	4
endolymphatic-sac	4
entropy	4
epigenetic	4
estimation	4
exons	4
exploratory	4
filtering	4
gastric-cancer-group	4
global	4
graphical-modelling	4
grid	4
guide	4
high-dimensional	4
hybrid	4
inhibitors	4
inner-ear	4
interface	4
invitro	4
knowledge-based	4
literature	4
map	4
metabolic-control-analysis	4
mice	4
mining	4
nested	4
ode	4
ontologies	4
ordinal	4
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power-laws	4
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profiling	4
scientific	4
sequence-analysis	4
signals	4
signature	4
standard	4
steady-state	4
survey	4
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toxoplasma	4
transcript	4
transformation	4
unknown	4
upt	4
web	4
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affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
automatic	3
bacteria	3
beta	3
calibration	3
cell	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromosomal-expression	3
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component	3
dataset	3
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differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
environment	3
enzyme	3
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fdr	3
gene-circuits	3
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genes	3
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hmm	3
humans	3
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physics	3
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ranking	3
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repository	3
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resonance	3
resource	3
robust	3
signaling-system	3
signatures	3
snp	3
stochastic-resonance	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
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associations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cells	2
chromatin	2
chromosome-wide	2
constraint-based-modelling	2
copy-number-variation	2
correlation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
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deterministic	2
difference	2
distance	2
dsrna	2
dynamics	2
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exon	2
false-discovery	2
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gamma	2
generative	2
genotype	2
grid-computing	2
heart	2
homologous	2
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internet	2
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memory	2
metabolic	2
miame	2
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multi-target	2
mutations	2
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non-specific	2
nucleic	2
numerical	2
octave	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
phenome	2
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pipelines	2
plant	2
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poly	2
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present_absent_call	2
primer	2
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programming	2
properties	2
proteome	2
protozoan	2
rate-law	2
reasoning	2
rma	2
sage	2
saturation	2
semantic-web	2
sequential	2
set	2
small	2
space	2
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stochasticity	2
stress	2
structural-biology	2
subcellular	2
target	2
t-cell	2
threshold	2
translational-medicine	2
t-test	2
two-color	2
user-computer	2
variational-inference	2
vector	2
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454	1
5--3	1
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and	1
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cap	1
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cell-migration	1
cell-movement	1
cell-population	1
cellular-automata	1
cellular-networks	1
cellular-response	1
cell-wall	1
cgh	1
chain	1
chemistry	1
chicken	1
chip	1
chromosomal-localization	1
chromosomes	1
civil	1
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clouds	1
cluster	1
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forest	1
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gapdh	1
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gel	1
gene-design	1
gene-modules	1
gene-networks	1
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gene-silencing	1
genetic_engineering	1
genome-assembly	1
geometry	1
glycan	1
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glycoprotein	1
goodness-of-fit	1
gram-positive	1
health	1
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heuristics	1
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high-resolution	1
high-signal	1
histological	1
histone	1
ht_sequencing	1
hybridis	1
hybridized	1
illumina	1
immune-system	1
immunology	1
impact	1
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imprinting	1
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index	1
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integrity	1
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introns	1
invasive	1
java	1
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knockout	1
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level	1
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method-validation	1
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methylome	1
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microscopy	1
microtubule	1
mitosis	1
model-organism	1
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modulation	1
module-networks	1
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molecular-connectivity-map	1
molecules	1
monte-carlo	1
morphogenetic	1
morphology	1
mouse	1
movements	1
mrna-expression	1
ms	1
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myth	1
naive	1
negative	1
neural	1
neural-networks	1
nonequilibrium	1
non-gaussian	1
normative	1
nucleosome	1
null-distribution	1
object-oriented-data-analysis	1
object-oriented-design	1
of	1
olfaction	1
oligo-capping	1
oligodt	1
oral-medicine	1
organic	1
organization-theory	1
organizing	1
oriental	1
original	1
orthologous	1
oscillators	1
oxidative	1
parabolic	1
parameter-degeneracy	1
particle	1
perspective	1
pharmacological	1
phenotypes	1
phosphorylation	1
physical-chemistry	1
pioneering	1
platform	1
poisson	1
polya	1
positive	1
precision	1
preconditioning	1
preprocessing	1
priming	1
primitives	1
principal	1
principles	1
probes	1
probe-selection	1
probeset	1
probe-summarization	1
probit	1
productivity	1
prognostic	1
program	1
progression	1
proinflammatory	1
project	1
prokaryotes	1
proliferation	1
promoters	1
proof	1
protection	1
proteins	1
protein-translation	1
protocol	1
protocols	1
psychophysical	1
p-value	1
quantiles	1
quantum-mechanics	1
quasi	1
reactionmethods	1
reaction-systems	1
re-engineering	1
regulator	1
regulatory-modules	1
reivew	1
research	1
residual-analysis	1
results	1
retention	1
ribosome	1
rna-metabolism	1
rna-regulation	1
robots	1
robustness	1
rt-pcr	1
sample-size	1
science	1
screening	1
scripting	1
search	1
segmentation	1
self-organization	1
semantic-similarity	1
sequenc	1
signal-processing	1
signal-transduction	1
significance	1
single-cell	1
single-molecule	1
single-target	1
sirna	1
sites	1
smell	1
society	1
spatial	1
spatial-scale	1
spike-in	1
stability	1
standard-care	1
statistical-mechanics	1
stochastic-process	1
stomach	1
streaming	1
streptococcus	1
surgery	1
symmetry	1
synteny	1
systemic	1
t7	1
t7-primer	1
tags	1
teaching	1
technical	1
termination	1
text-mining	1
theorety	1
thesis	1
time-shift	1
tissue-level	1
top-down	1
transcription-enhancers	1
transcriptionn	1
transduction	1
transitions	1
trees	1
tuberculosis	1
tumors	1
tumour-growth	1
turnover	1
uniqueness	1
universal	1
unlabelled	1
variance	1
variants	1
vertebratesgenetics	1
virtual	1
virtual_human	1
vision	1
warning	1
western	1
wikipedia	1
workflow	1
workflows	1
writing	1
yeast	1

bertelsen's gene-expression [122 articles] Export

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