bertelsen's gene-regulation [25 articles] Export

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	Modeling stochasticity and robustness in gene regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i101-109. by Abhishek Garg, Kartik Mohanram, Alessandro Di Cara, Giovanni De Micheli, Ioannis Xenarios posted to stochasticity robustness network modelling gene-regulation by bertelsen on 2009-11-30 22:40:25 as along with 4 people and 1 group pkm ruichu dlobo jvb GEB
	A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 12. (2009), S14. by Liliana Ironi, Luigi Panzeri posted to systems-biology simulation qualitative nonlinear networks models gene-regulation framework dynamical-systems computational by bertelsen on 2009-11-30 11:54:45 as
	ChIP-chip comes of age for genome-wide functional analysis. [My Copy] Cancer research, Vol. 66, No. 14. (15 July 2006), pp. 6899-6902. by Jiejun Wu, Laura T. Smith, Christoph Plass, Tim H-M H. Huang posted to microarray gene-regulation functional-genomics epigenetic chip-chip by bertelsen on 2009-11-18 22:41:00 as along with 5 people and 1 group nklee guhjy imedina weimingzhe tvdbulck BioinfoCIPF
	Discovery of Regulatory Elements is Improved by a Discriminatory Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (13 November 2009), e1000562. by Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh posted to transcription-factor regulatory networks motif gene-regulation discover by bertelsen on 2009-11-13 15:01:44 as along with 4 people davfre ptrobajo maximilianh TRHvidsten
	RNA regulation of epigenetic processes. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 31, No. 1. (January 2009), pp. 51-59. by John S. Mattick, Paulo P. Amaral, Marcel E. Dinger, Tim R. Mercer, Mark F. Mehler posted to signals rna-regulation rna regulation gene-regulation epigenome epigenetic environment chromosomes chromatin by bertelsen on 2009-10-06 00:41:53 as along with 3 people guhjy galka8_diploma rdowell
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription signatures processes networks multi-scale molecular modules modular models microarray mechanistic gene-regulation disease comparative cancer by bertelsen on 2009-10-05 15:56:21 as along with 13 people and 1 group chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
	Factor analysis for gene regulatory networks and transcription factor activity profiles. [My Copy] BMC bioinformatics, Vol. 8 (23 February 2007), 61. by Iosifina Pournara, Lorenz Wernisch posted to transcription-factor sparse networks gene-regulation gene-expression factor-analysis by bertelsen on 2009-09-30 17:58:28 as along with 9 people ptrobajo isimpson akastrin guhjy shigepong lp2 hms kyriakos heliopais
	FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions [My Copy] Genome Biology, Vol. 10, No. 4. (2009), R39. by Jessica Severin, Andrew Waterhouse, Hideya Kawaji, et al.Timo Lassmann, Erik van Nimwegen, Piotr Balwierz, Michiel de Hoon, David Hume, Piero Carninci, Yoshihide Hayashizaki, Harukazu Suzuki, Carsten Daub, Alistair Forrest posted to transcription-factor transcription software regulator promoters network mirna integrating gene-regulation gene-expression database by bertelsen on 2009-09-27 16:12:38 as along with 10 people jfr Garamonfok rdiaz YukaH ealloza guhjy pengchy natstreet druvus dolchan
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to yeast transcription-factor stochastic nuclear localization gene-regulation gene-expression frequency_modulation eukaryotic coordination by bertelsen on 2009-09-25 12:12:45 as along with 8 people and 1 group ellarond siebert dpollard erel10 inesdesantiago raik caseybrown jjray RockmanLab
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted to protein-expression promoter noise networks gene-regulation gene-expression by bertelsen on 2009-09-25 11:56:56 as along with 18 people and 2 groups genocad Scis0000002 raik rklancer snuppepuppan guhjy okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard nklee tmmurali Bioinformatics SynBioSys
	How to infer gene networks from expression profiles. [My Copy] Molecular systems biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to reverse-engineering microarray gene-regulation gene-networks gene-expression by bertelsen on 2009-09-20 23:02:48 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted to non-protein-coding transcripts signature sequence-analysis rnai rna genome-wide genetic gene-regulation functional-genomics function epigenetic disease development complexity by bertelsen on 2009-09-05 10:16:09 as along with 22 people and 2 groups hzoltan Zephyrus antonkratz frohike natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza dpollard hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt stajich RockmanLab Mycology
	Multivariate analysis of noise in genetic regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 229, No. 4. (August 2004), pp. 501-521. by R. Tomioka posted to systems-biology stochastic networks multivariate genetic gene-regulation gene-expression analysis by bertelsen on 2009-09-01 20:48:07 as along with 2 people ryotat Dangerfc
	Stability and flexibility of epigenetic gene regulation in mammalian development [My Copy] Nature, Vol. 447, No. 7143. (23 May 2007), pp. 425-432. by Wolf Reik posted to development epigenetic gene-regulation mammalian review by bertelsen on 2009-07-22 23:47:17 as along with 5 people aprickett sebastien_vigneau bioyang elzodw jasonflannick
	Computational and experimental approaches for modeling gene regulatory networks. [My Copy] Curr Pharm Des, Vol. 13, No. 14. (2007), pp. 1415-1436. by J. Goutsias, N. H. Lee posted to computational experiment functional-genomics gene-regulation microarray modeling networks reverse-engineering review by bertelsen on 2009-03-03 22:44:19 as along with 1 person and 1 group dpollard EisenLab
	Rewriting Game Theory as a Foundation for State-Based Models of Gene Regulation [My Copy] Computational Methods in Systems Biology (2006), pp. 257-270. by Chafika Chettaoui, Franck Delaplace, Pierre Lescanne, Mun’delanji Vestergaard, René Vestergaard posted to game-theory gene-regulation networks regulation by bertelsen on 2008-11-19 15:35:29 as
	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom posted to gene-regulation network transcription by bertelsen on 2008-04-29 21:25:10 as along with 7 people natstreet druvus heliopais dquest kengg bootsy guhjy
	Current approaches to gene regulatory network modelling [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S9. by Thomas Schlitt, Alvis Brazma posted to gene-regulation modeling modelling networks by bertelsen on 2008-04-29 20:40:51 as along with 7 people antonkratz Borelli aviad_work kengg shigepong ramakris nicholasflann
	From biophysics to evolutionary genetics: statistical aspects of gene regulation. [My Copy] BMC bioinformatics, Vol. 8 Suppl 6 (2007) by Michael Lässig posted to biophysics gene-regulation interactions by bertelsen on 2008-04-29 19:56:54 as along with 7 people sockington leemond31 jjray heliopais guhjy shigepong bpcusack
	Regulation of gene expression by alternative untranslated regions [My Copy] Trends in Genetics, Vol. 22, No. 3. (March 2006), pp. 119-122. by Thomas A. Hughes posted to alternative expression gene-regulation utr by bertelsen on 2008-04-23 22:57:26 as along with 3 people and 3 groups dchughes paulcartwright klo G4ID Genetics-of-Gambling BergmanLab
	Regulating Gene Expression through RNA Nuclear Retention [My Copy] Cell, Vol. 123, No. 2. (21 October 2005), pp. 249-263. by Kannanganattu V. Prasanth, Supriya G. Prasanth, Zhenyu Xuan, et al.Stephen Hearn, Susan M. Freier, C. Frank Bennett, Michael Q. Zhang, David L. Spector posted to expression gene-regulation nuclear polyadenylation retention rna by bertelsen on 2008-04-18 22:05:36 as along with 4 people haarcuba operon rklancer Jporci
	Mechanisms of Subcellular mRNA Localization [My Copy] Cell, Vol. 108, No. 4. (22 February 2002), pp. 533-544. by Malgorzata Kloc, Ruth N. Zearfoss, Laurence D. Etkin posted to gene-regulation localization mrna regulation subcellular utr by bertelsen on 2008-04-18 19:49:09 as
	In search of functional association from time-series microarray data based on the change trend and level of gene expression. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by F. He, A. P. Zeng posted to clustering gene-regulation microarray time-series by bertelsen on 2007-09-05 10:07:04 as along with 1 person dps
	Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory [My Copy] BMC Bioinformatics, Vol. 8 (23 January 2007), 20. by Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva posted to gene-regulation kinetic microarray modeling network by bertelsen on 2007-09-05 09:30:53 as along with 3 people and 1 group dpollard aswin shigepong EisenLab
	Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405. by D. E. Zak, G. E. Gonye, J. S. Schwaber, F. J. Doyle posted to gene-regulation by bertelsen on 2007-09-05 09:23:42 as along with 5 people ryang wnpx jrbanga lukaswindhager aheilbut

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microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
expression	59
networks	59
affymetrix	48
gene	47
software	46
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
modeling	29
pathway	29
disease	29
models	28
rna	27
genechip	27
polyadenylation	26
human	26
drug-discovery	25
gene-regulation	25
clustering	24
oligonucleotide	24
multi-scale	24
ontology	23
biochemical	22
probe	22
inference	21
probability	20
differential	20
transcription	20
degradation	20
mrna	20
molecular	20
factor-analysis	19
dynamic	19
database	19
integrative	18
simulation	18
mathematical	18
stochastic	18
probe-level	18
probabilistic	17
chemical	17
structure	17
integration	16
function	16
kinetic	16
nonparametric	16
computational	16
dirichlet-process	16
statistical	15
genomics	15
experiment	15
sequence	15
high-throughput	15
theory	15
comparison	15
algorithm	15
drug	15
genome	15
sampling	15
r	15
complexity	14
enrichment-analysis	14
protein	14
framework	14
normalization	14
regression	14
prediction	14
python	14
noise	14
gastric	14
array	13
pathways	13
mirna	13
therapy	13
classification	13
statistics	13
personalized-medicine	13
bioconductor	13
interpretation	13
control	13
biochemical-systems-theory	13
go	13
phenotype	13
transcriptome	12
algorithms	12
clinical	12
latent	12
data-integration	12
hierarchical	12
mechanism	12
promoter	12
modules	12
non-protein-coding	11
tumour	11
computational-biology	11
distribution	11
oncogenesis	11
sparse	11
evolution	11
quality	11
integrating	10
systems	10
quantitative	10
test	10
mixture	10
mcmc	10
uncertainty	10
proteomics	10
genetic	10
modular	10
alternative	10
interactions	10
biomedical	10
transcription-factor	9
dna	9
multiple	9
visualization	9
large-scale	9
selection	9
diagnostic	9
biophysics	9
quality-control	9
hypothesis	9
s-system	9
information	9
methodology	9
cell-biology	9
machine-learning	9
discovery	9
insilico	9
3-utr	9
design	9
method	9
therapeutic	9
heterogeneity	8
measure	8
hybridization	8
utr	8
background	8
overview	8
transcripts	8
experimental-design	8
ica	8
linear	8
systemic-computation	8
time-series	8
rnai	8
synthetic-biology	8
methods	8
time-course	7
emergent-properties	7
organization	7
drug-target	7
development	7
translation	7
specificity	7
physiology	7
invivo	7
infection	7
pathology	7
tiling	7
multivariate	7
binary	7
ontologies	7
webservices	7
pathway-analysis	7
rats	7
mapping	7
nonlinear	7
agent-based	7
processes	6
splicing	6
metabolomics	6
application	6
graphs	6
evolutionary-computation	6
reverse-engineering	6
chip-chip	6
summary	6
tumor	6
epigenetic	6
metabolic-network	6
primary	6
cdna	6
pre-processing	6
reactions	6
rna-seq	6
profiles	6
computation	6
upt	6
matrix-factorization	6
pattern	6
dynamics	6
feature	6
computing	6
prior	6
sequencing	6
scientific	6
thermodynamics	6
genetics	6
databases	6
mammalian	6
kidney	5
comparative	5
dependence	5
correction	5
membrane	5
import	5
error	5
encode	5
binfbib	5
book	5
sensitivity	5
genome-wide	5
simulations	5
apoptosis	5
variation	5
quantitative-trait-loci	5
invitro	5
process	5
normal	5
cell-cycle	5
physical	5
nonsense-mediated	5
nmd	5
medical	5
baysian	5
identification	5
cell	5
unknown	5
treatment	5
gene-set-analysis	5
profiling	5
profilingmethods	5
truncated	5
signal	5
time	5
biomarker	5
ncrna	5
environment	5
gibbs	5
measurement	5
synthesis	5
eukaryotic	5
bias	5
pca	5
topological	5
protein-expression	5
optimization	5
quality-assessment	5
gaussian	5
gene-function	5
variational	5
localization	5
false	5
animals	4
sequence-analysis	4
pharmacogenomic	4
mice	4
decay	4
high-dimensional	4
endolymphatic-sac	4
cage	4
ode	4
gastric-cancer-group	4
signals	4
web	4
entropy	4
diversity	4
prognosis	4
mechanistic	4
tissue-specific	4
approximation	4
dynamical-systems	4
steady-state	4
signatures	4
grid	4
nested	4
co-expression	4
mining	4
survey	4
philosophy	4
exons	4
filtering	4
motif	4
global	4
map	4
physics	4
graphical-modelling	4
ordinal	4
signature	4
5-utr	4
power-laws	4
exploratory	4
biomolecular	4
standard	4
transcript	4
transformation	4
post-transcriptional	4
mixtures	4
toxoplasma	4
interface	4
inhibitors	4
inflammation	4
literature	4
inner-ear	4
knowledge-based	4
metabolic-control-analysis	4
local	4
co-regulation	4
circuits	4
guide	4
hybrid	4
estimation	4
dirichlet	3
differentiation	3
model-selection	3
random	3
multinomial	3
resource	3
differential-equation	3
structural-biology	3
dataset	3
chromosomal-expression	3
evaluation	3
chip-seq	3
pattern-recognition	3
affinity	3
component	3
humans	3
repository	3
chemotherapy	3
management	3
snp	3
chromatin	3
fdr	3
generalized	3
distributions	3
metabolic	3
signal-transduction	3
amplification	3
associations	3
nuclear	3
bacteria	3
metastatic	3
identifiability	3
parasitology	3
performance	3
characteristics	3
robust	3
languages	3
adjustment	3
interference	3
correlation	3
combinatorial	3
automatic	3
renormalization-group-analysis	3
stochasticity	3
gene-circuits	3
tumorigenesis	3
affy	3
introduction	3
ranking	3
accuracy	3
nonnegative	3
assessment	3
unsupervised	3
semantic-web	3
enzyme	3
medicine	3
hmm	3
chemical-master-equation	3
reproducibility	3
polymerase	3
independence	3
exchangeability	3
stochastic-resonance	3
natural	3
regulators	3
genes	3
genotyping	3
beta	3
learning	3
perturbation	3
cell-lines	3
modularity	3
histological	3
signaling-system	3
calibration	3
analysismethods	3
alignment	3
resonance	3
cells	2
text-mining	2
sequential	2
target	2
foundations	2
stem-cells	2
rma	2
present_absent_call	2
exon	2
mutations	2
missing-value	2
cox-theorem	2
approximate	2
stress	2
mismatch	2
5	2
generative	2
homologous	2
translational-medicine	2
physiome	2
threshold	2
rate-law	2
false-discovery	2
constraint-based-modelling	2
primer	2
non-specific	2
difference	2
biopython	2
fractal	2
properties	2
gamma	2
poly	2
distance	2
vector	2
acid	2
saturation	2
benchmark	2
user-computer	2
regulatory-modules	2
knowledgebase	2
parts	2
plausibility	2
health	2
plant	2
indian	2
probit	2
miame	2
lung	2
matrix	2
memory	2
t-test	2
pipelines	2
community	2
set	2
buffet	2
mass_spectroscopy	2
copy-number-variation	2
variational-inference	2
phenome	2
cross-platform	2
kullback-leibler	2
nonequilibrium	2
dsrna	2
lasso	2
comment	2
deterministic	2
behaviour	2
perspective	2
heterogeneous	2
preprocessing	2
post-transcription	2
neuroscience	2
mage	2
3	2
cell-migration	2
subcellular	2
pharmacogenomics	2
organ	2
immune-system	2
opensource	2
p-bodies	2
molecular-connectivity-map	2
programming	2
mitochondria	2
chromosome-wide	2
approximations	2
epithelial	2
grid-computing	2
signaling-pathway	2
sage	2
cross-study	2
multi-target	2
proteome	2

bertelsen's gene-regulation [25 articles] Export

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